Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003755.1

Orthogroup ID

OG0004957

Physical Location & Seq

Genomic Coordinates Forward (+)

39170 .. 44723

Gene Structure 5554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003755.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ctgacttcacgcttccctcgcgcccttgaaccaccaccccacgcatctctcactctcccatcacccatagaatttcttctcttcaatggcgaccttactgggccagctctctgcgatttccgccatcggctcctgttgctcctcctcttcatcttcctcctcctccctctcttccaccaccaccacttcactggtttccgtcgccacctggccgcagtctgcccggaaactccccggagaccggagccggagtctccagaggtccgttgtccgagcaatggttcagacggtccccggagctccggggaaatggagaggctctccgctaaagaatcactgcttctcgccttcaaggatgctgggggttttgaggcattagtcactggaaagacgacagacatgcagcggattgatgtcaatgagaggattactgctttggagcgggtcaatccaacaccccgccctacaacgtcgccctttttggaaggacgatggaatttcgagtggtttgggtccggaagcccaggtctatttgctgctagatttctattagagagatttccttcgacagtggccagtttgtcaaaaatggaggtgctcatcaaggaagggaatgcaaagattacagcaaacatgaaaatattgaactcgatagaaagcaaattttctctgtcaaccaagttgtctgtggagggaccagttagaatgaaagaggaatatgttgaggggattcttgacacaccaacagttattgaagaaacaatacctgaacagctaaaaggtgcacttggtcaggcagtcaacacagtgcaacagcttcctgttccaattagggatgccttcgccagtgggttgagagttcctttaactggagctttcgagagactcttcatgatttcctatcttgatatggagatactgatcataagagatgctgctggaattcctgaaatacttacaaggttagattcaccctcatctcccctggcagaaaccatcacggagtatgagagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

338

Amino Acids

37.52

Weight (kDa)

5.63

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42130 AT2G42130 AT2G42130 AT2G42130 AT2G42130 AT3G58010 AT3G58010
fragaria_vesca	FvH4_6g22380 FvH4_6g22380
malus_domestica	MD12G1057400.v1.1 MD14G1058000.v1.1
prunus_persica	Prupe.7G076700_v2.0.a1 Prupe.7G076700_v2.0.a1 Prupe.7G076700_v2.0.a1 Prupe.7G076700_v2.0.a1 Prupe.7G076700_v2.0.a1
pyrus_communis	pycom12g05110 pycom14g04700
rosa_chinensis	RchiOBHm_Chr3g0479711
rosa_laevigata	RLG00000023547
rosa_multiflora	Rmu_sc0003755.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402050
rosa_rugosa	Rorug03G0177700 Rorug03G0177800
rosa_samantha	Rh3AG228500 Rh3BG261500 Rh3CG258600 Rh3DG254800
rosa_wichuraiana	Rw3G020430 Rw3G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	442
AccII	CGCG	1 cut(s)	21
AccIII	TCCGGA	1 cut(s)	515
AciI	CCGC	6 cut(s)	121, 213, 324, 406, 442, 460
AcoI	YGGCCR	2 cut(s)	210, 573
AcsI	RAATTY	4 cut(s)	71, 496, 662, 942
AfiI	CCNNNNNNNGG	3 cut(s)	241, 278, 869
AgsI	TTSAA	5 cut(s)	29, 85, 352, 646, 755
AjnI	CCWGG	3 cut(s)	207, 523, 984
AluBI	AGCT	6 cut(s)	107, 300, 775, 817, 875, 1014
AluI	AGCT	6 cut(s)	107, 300, 775, 817, 875, 1014
Alw21I	GWGCWC	3 cut(s)	302, 600, 787
Alw26I	GTCTC	3 cut(s)	232, 258, 877
Alw44I	GTGCAC	1 cut(s)	783
Aor13HI	TCCGGA	1 cut(s)	515
AoxI	GGCC	3 cut(s)	101, 210, 573
ApaLI	GTGCAC	1 cut(s)	783
ApeKI	GCWGC	3 cut(s)	403, 536, 935
ApoI	RAATTY	4 cut(s)	71, 496, 662, 942
Asp700I	GAANNNNTTC	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	5 cut(s)	101, 262, 290, 513, 695
AsuC2I	CCSGG	4 cut(s)	224, 235, 295, 304
AsuHPI	GGTGA	2 cut(s)	54, 963
AvaII	GGWCC	4 cut(s)	262, 290, 513, 695
BaeGI	GKGCMC	1 cut(s)	787
BalI	TGGCCA	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	302
BarI	GAAGNNNNNNTAC	2 cut(s)	747, 779
Bbv12I	GWGCWC	3 cut(s)	302, 600, 787
BbvI	GCAGC	3 cut(s)	415, 523, 922
BccI	CCATC	4 cut(s)	67, 132, 486, 1004
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BciT130I	CCWGG	3 cut(s)	209, 525, 986
BclI	TGATCA	1 cut(s)	921
BcnI	CCSGG	4 cut(s)	224, 235, 295, 304
BcoDI	GTCTC	3 cut(s)	232, 258, 877
BfaI	CTAG	1 cut(s)	540
BisI	GCNGC	4 cut(s)	213, 404, 537, 936
BlsI	GCNGC	4 cut(s)	214, 405, 538, 937
Bme1390I	CCNGG	7 cut(s)	209, 224, 235, 295, 304, 525, 986
Bme18I	GGWCC	4 cut(s)	262, 290, 513, 695
BmgT120I	GGNCC	5 cut(s)	101, 262, 290, 513, 695
BmiI	GGNNCC	5 cut(s)	131, 246, 292, 514, 696
BmrFI	CCNGG	7 cut(s)	209, 224, 235, 295, 304, 525, 986
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	4 cut(s)	53, 346, 826, 922
BmuI	ACTGGG	1 cut(s)	108
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
BpmI	CTGGAG	2 cut(s)	240, 891
BpuMI	CCSGG	4 cut(s)	224, 235, 295, 304
BsaBI	GATNNNNATC	1 cut(s)	920
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	5 cut(s)	233, 293, 303, 523, 984
BsaWI	WCCGGW	2 cut(s)	241, 515
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 278, 869
Bse1I	ACTGG	7 cut(s)	103, 196, 388, 576, 698, 846, 874
Bse3DI	GCAATG	1 cut(s)	283
Bse8I	GATNNNNATC	1 cut(s)	920
BseAI	TCCGGA	1 cut(s)	515
BseBI	CCWGG	3 cut(s)	209, 525, 986
BseDI	CCNNGG	5 cut(s)	233, 293, 303, 523, 984
BseGI	GGATG	2 cut(s)	361, 841
BseJI	GATNNNNATC	1 cut(s)	920
BseLI	CCNNNNNNNGG	3 cut(s)	241, 278, 869
BseMI	GCAATG	1 cut(s)	283
BseNI	ACTGG	7 cut(s)	103, 196, 388, 576, 698, 846, 874
BseRI	GAGGAG	4 cut(s)	131, 134, 149, 152
BseSI	GKGCMC	1 cut(s)	787
BseXI	GCAGC	3 cut(s)	415, 523, 922
BseYI	CCCAGC	1 cut(s)	359
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	3 cut(s)	103, 212, 575
BsiHKAI	GWGCWC	3 cut(s)	302, 600, 787
BsiSI	CCGG	7 cut(s)	224, 235, 242, 248, 295, 303, 516
BslFI	GGGAC	2 cut(s)	276, 708
BslI	CCNNNNNNNGG	3 cut(s)	241, 278, 869
BsmAI	GTCTC	3 cut(s)	232, 258, 877
BsmFI	GGGAC	2 cut(s)	276, 708
BsmI	GAATGC	1 cut(s)	619
BsnI	GGCC	3 cut(s)	103, 212, 575
Bso31I	GGTCTC	1 cut(s)	232
Bsp1286I	GDGCHC	3 cut(s)	302, 600, 787
Bsp13I	TCCGGA	1 cut(s)	515
Bsp143I	GATC	1 cut(s)	921
BspACI	CCGC	6 cut(s)	121, 213, 324, 406, 442, 460
BspANI	GGCC	3 cut(s)	103, 212, 575
BspEI	TCCGGA	1 cut(s)	515
BspFNI	CGCG	1 cut(s)	21
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	5 cut(s)	131, 246, 292, 514, 696
BspTNI	GGTCTC	1 cut(s)	232
BsrBI	CCGCTC	1 cut(s)	442
BsrDI	GCAATG	1 cut(s)	283
BsrI	ACTGG	7 cut(s)	103, 196, 388, 576, 698, 846, 874
BssECI	CCNNGG	5 cut(s)	233, 293, 303, 523, 984
BssMI	GATC	1 cut(s)	921
Bst2UI	CCWGG	3 cut(s)	209, 525, 986
Bst4CI	ACNGT	4 cut(s)	290, 571, 748, 808
Bst6I	CTCTTC	4 cut(s)	86, 152, 176, 893
BstC8I	GCNNGC	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	361, 841
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	1 cut(s)	924
BstMAI	GTCTC	3 cut(s)	232, 258, 877
BstMBI	GATC	1 cut(s)	921
BstMWI	GCNNNNNNNGC	3 cut(s)	18, 120, 136
BstNI	CCWGG	3 cut(s)	209, 525, 986
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	7 cut(s)	207, 222, 233, 293, 302, 523, 984
BstSLI	GKGCMC	1 cut(s)	787
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	3 cut(s)	415, 523, 922
BstXI	CCANNNNNNTGG	1 cut(s)	191
BsuRI	GGCC	3 cut(s)	103, 212, 575
BtsCI	GGATG	2 cut(s)	361, 841
BtsI	GCAGTG	1 cut(s)	335
BtsIMutI	CAGTG	6 cut(s)	189, 335, 381, 576, 813, 853
Cac8I	GCNNGC	1 cut(s)	105
CciI	TCATGA	1 cut(s)	891
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	5 cut(s)	101, 262, 290, 513, 695
CviAII	CATG	3 cut(s)	400, 634, 892
DpnI	GATC	1 cut(s)	923
DpnII	GATC	1 cut(s)	921
EaeI	YGGCCR	2 cut(s)	210, 573
Eam1104I	CTCTTC	4 cut(s)	86, 152, 176, 893
EarI	CTCTTC	4 cut(s)	86, 152, 176, 893
EciI	GGCGGA	1 cut(s)	110
Ecl136II	GAGCTC	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	302
Eco31I	GGTCTC	1 cut(s)	232
Eco47I	GGWCC	4 cut(s)	262, 290, 513, 695
Eco53kI	GAGCTC	1 cut(s)	300
EcoICRI	GAGCTC	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	942
EcoRII	CCWGG	3 cut(s)	207, 523, 984
EcoT38I	GRGCYC	1 cut(s)	302
FaeI	CATG	3 cut(s)	403, 637, 895
FaiI	YATR	8 cut(s)	68, 401, 635, 720, 893, 911, 926, 1008
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FaqI	GGGAC	2 cut(s)	276, 708
FatI	CATG	3 cut(s)	399, 633, 891
FauI	CCCGC	2 cut(s)	435, 467
FbaI	TGATCA	1 cut(s)	921
Fnu4HI	GCNGC	4 cut(s)	213, 404, 537, 936
FokI	GGATG	2 cut(s)	368, 848
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	4 cut(s)	213, 404, 537, 936
FspBI	CTAG	1 cut(s)	540
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	4 cut(s)	213, 404, 537, 936
GsaI	CCCAGC	1 cut(s)	363
GsuI	CTGGAG	2 cut(s)	240, 891
HaeIII	GGCC	3 cut(s)	103, 212, 575
HapII	CCGG	7 cut(s)	224, 235, 242, 248, 295, 303, 516
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	3 cut(s)	403, 637, 895
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	2 cut(s)	675, 802
HindII	GTYRAC	2 cut(s)	675, 802
HinfI	GANTC	5 cut(s)	251, 332, 730, 885, 968
HpaII	CCGG	7 cut(s)	224, 235, 242, 248, 295, 303, 516
HphI	GGTGA	2 cut(s)	54, 963
Hpy166II	GTNNAC	3 cut(s)	675, 785, 802
Hpy188I	TCNGA	2 cut(s)	273, 286
Hpy188III	TCNNGA	7 cut(s)	257, 516, 734, 880, 892, 905, 947
Hpy8I	GTNNAC	3 cut(s)	675, 785, 802
Hpy99I	CGWCG	2 cut(s)	204, 475
HpyAV	CCTTC	5 cut(s)	358, 479, 573, 602, 850
HpyCH4III	ACNGT	4 cut(s)	290, 571, 748, 808
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	4 cut(s)	403, 617, 785, 811
HpyF10VI	GCNNNNNNNGC	3 cut(s)	18, 120, 136
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	3 cut(s)	403, 637, 895
HspAI	GCGC	1 cut(s)	21
Kpn2I	TCCGGA	1 cut(s)	515
Ksp22I	TGATCA	1 cut(s)	921
Kzo9I	GATC	1 cut(s)	921
LmnI	GCTCC	7 cut(s)	135, 144, 244, 297, 305, 439, 872
Lsp1109I	GCAGC	3 cut(s)	415, 523, 922
LweI	GCATC	4 cut(s)	53, 346, 826, 922
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	1 cut(s)	923
MbiI	CCGCTC	1 cut(s)	442
MboI	GATC	1 cut(s)	921
MboII	GAAGA	7 cut(s)	68, 73, 139, 145, 163, 767, 880
MhlI	GDGCHC	3 cut(s)	302, 600, 787
MlsI	TGGCCA	1 cut(s)	575
MluCI	AATT	5 cut(s)	71, 496, 662, 828, 942
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	2 cut(s)	260, 879
MmeI	TCCRAC	1 cut(s)	476
Mox20I	TGGCCA	1 cut(s)	575
MroI	TCCGGA	1 cut(s)	515
MroXI	GAANNNNTTC	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	1 cut(s)	866
Msp20I	TGGCCA	1 cut(s)	575
MspA1I	CMGCKG	1 cut(s)	406
MspI	CCGG	7 cut(s)	224, 235, 242, 248, 295, 303, 516
MspR9I	CCNGG	7 cut(s)	209, 224, 235, 295, 304, 525, 986
Mva1269I	GAATGC	1 cut(s)	619
MvaI	CCWGG	3 cut(s)	209, 525, 986
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	3 cut(s)	18, 120, 136
NciI	CCSGG	4 cut(s)	224, 235, 295, 304
NdeII	GATC	1 cut(s)	921
NlaIII	CATG	3 cut(s)	403, 637, 895
NlaIV	GGNNCC	5 cut(s)	131, 246, 292, 514, 696
NmuCI	GTSAC	1 cut(s)	379
NspI	RCATGY	1 cut(s)	403
PagI	TCATGA	1 cut(s)	891
PctI	GAATGC	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	3 cut(s)	332, 730, 968
PkrI	GCNGC	4 cut(s)	214, 405, 538, 937
PleI	GAGTC	2 cut(s)	259, 879
PpsI	GAGTC	2 cut(s)	259, 879
Psp124BI	GAGCTC	1 cut(s)	302
Psp6I	CCWGG	3 cut(s)	207, 523, 984
PspFI	CCCAGC	1 cut(s)	359
PspGI	CCWGG	3 cut(s)	207, 523, 984
PspN4I	GGNNCC	5 cut(s)	131, 246, 292, 514, 696
PspPI	GGNCC	5 cut(s)	101, 262, 290, 513, 695
SacI	GAGCTC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	866
SatI	GCNGC	4 cut(s)	213, 404, 537, 936
Sau3AI	GATC	1 cut(s)	921
Sau96I	GGNCC	5 cut(s)	101, 262, 290, 513, 695
SchI	GAGTC	2 cut(s)	260, 879
ScrFI	CCNGG	7 cut(s)	209, 224, 235, 295, 304, 525, 986
SduI	GDGCHC	3 cut(s)	302, 600, 787
SfaNI	GCATC	4 cut(s)	53, 346, 826, 922
SinI	GGWCC	4 cut(s)	262, 290, 513, 695
Sse9I	AATT	5 cut(s)	71, 496, 662, 828, 942
SsiI	CCGC	6 cut(s)	121, 213, 324, 406, 442, 460
SspI	AATATT	1 cut(s)	642
SspMI	CTAG	1 cut(s)	540
SstI	GAGCTC	1 cut(s)	302
StyD4I	CCNGG	7 cut(s)	207, 222, 233, 293, 302, 523, 984
TaaI	ACNGT	4 cut(s)	290, 571, 748, 808
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	4 cut(s)	501, 566, 650, 879
TasI	AATT	5 cut(s)	71, 496, 662, 828, 942
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	3 cut(s)	332, 730, 968
Tru1I	TTAA	1 cut(s)	866
Tru9I	TTAA	1 cut(s)	866
TscAI	CASTG	6 cut(s)	196, 342, 388, 576, 813, 853
TseFI	GTSAC	1 cut(s)	379
TseI	GCWGC	3 cut(s)	403, 536, 935
Tsp45I	GTSAC	1 cut(s)	379
TspDTI	ATGAA	4 cut(s)	139, 650, 722, 880
TspGWI	ACGGA	3 cut(s)	188, 254, 1016
TspRI	CASTG	6 cut(s)	196, 342, 388, 576, 813, 853
VneI	GTGCAC	1 cut(s)	783
VpaK11BI	GGWCC	4 cut(s)	262, 290, 513, 695
XapI	RAATTY	4 cut(s)	71, 496, 662, 942
XceI	RCATGY	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	2 cut(s)	188, 685
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.