MD14G1058000.v1.1

plastid-lipid-associated protein 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0004957
Physical Location & Seq
Forward (+)
5967992 .. 5973522
5531 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1058000.v1.1.491

Sequence Viewer

Length: 1098 bp
ATGACGAAAGTACCCCTCTTCAGAGACACACGAGCTTTCCCACTTCCCACTTCCCTCGCAGCCGTCAACCACCCACCTGTCTCTCCTCTCTCCCGACGATTCAAAACAGTACACTTCTCCTCTTTCAGCTCTTCCCCTAGGGTTTCTCTCTCTCCAATGGCGTCGGTGCAGAGCCGCCTCTCTGCGTTTTCTTCCATAACCTCGTGCTATTCGACTTCGTCTTCTTCGCCGTCGTCGGCCTTCTCTTCCACCGCCACCACTGCACTCGTTTCCGTCGGTACGTCGCCGCAGTGTCGCCGGAAATGCTACAGAGACGGGAGAATTAGCTTCCAGCGGTCCGTATGCCGAGCGATGGTTCAGCAGGCCGTTCCCGGAGCTACTGCTGCCTATGCTAAGGAAATGGAGAGGCTTTCCGCTAAAGAATCGCTTCTTCTCGCCTTTAAGGATGCTGGGGGCTTTGAGGCTTTAGTCACTGGGAAGACAACAGACATGGAGCGGATTGATGTGAATGAGAGGATAACTGCTTTGGAGCGGGTCAATCCAACACCACGTCCTACAACGTCGCCTTTTTTGGAAGGACGATGGAATTTCGAGTGGTTTGGATCTGGAAGCCCAGGTCTTTTTGCTGCCAGATTTTTGTTTGAGAGGTTTCCTTCAACTTTGGCTAGTTTGAGAAAAATGCAGGTGGTCATCAAGGATGGGAATGCAATGATTACGGCAAAATTGAAAGTGTTGAACTCGATAGAAAGCAAATTTACTCTGTCAACCAAGTTAACTGTGGAGGGACCAGTTCGAATGAAAGAGCAATATGTTGAGGGGGTTCCTGAGATGCCAACAGTTATTGAAGAGACAATACCAGACCAGCTAAAAGGTGCACTTGGTCAGGCTGTAAACACAGTGCAACAACTTCCTCTGCCTATTAGGGATGCCTTTTCCAGTGGGCTGAAAGTTCCTTTACCTGGATCTTTCGAGAGACTCTTCATGATCTCCTATCTTGATACGGAGATACTTATAATACGAGATGCTGCTGGAGTTCCTGAAGTGCTTACAAGGTTGGAGTCCCCGCTGGAAGAAGGCGTTATAGAGTATGAAAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

366

Amino Acids

39.99

Weight (kDa)

9.26

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 162 - 345 2.3e-10 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1013
AarI CACCTGC 1 cut(s) 673
Acc36I ACCTGC 1 cut(s) 673
AccBSI CCGCTC 2 cut(s) 496, 532
AciI CCGC 8 cut(s) 175, 252, 287, 334, 414, 496, 532, 1064
AclWI GGATC 2 cut(s) 610, 970
AcsI RAATTY 2 cut(s) 586, 752
AcuI CTGAAG 2 cut(s) 4, 1059
AcyI GRCGYC 1 cut(s) 161
AfaI GTAC 3 cut(s) 12, 111, 280
AfiI CCNNNNNNNGG 2 cut(s) 352, 959
AgsI TTSAA 5 cut(s) 103, 657, 727, 736, 845
AjiI CACGTC 1 cut(s) 551
AjnI CCWGG 2 cut(s) 613, 958
AluBI AGCT 6 cut(s) 35, 129, 327, 377, 865, 1095
AluI AGCT 6 cut(s) 35, 129, 327, 377, 865, 1095
Alw21I GWGCWC 1 cut(s) 877
Alw26I GTCTC 5 cut(s) 18, 85, 306, 842, 967
Alw44I GTGCAC 1 cut(s) 873
AlwI GGATC 2 cut(s) 610, 970
AoxI GGCC 2 cut(s) 237, 363
ApaLI GTGCAC 1 cut(s) 873
ApeKI GCWGC 4 cut(s) 59, 383, 626, 1025
ApoI RAATTY 2 cut(s) 586, 752
Asp700I GAANNNNTTC 1 cut(s) 426
AspA2I CCTAGG 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 336, 785
AsuC2I CCSGG 1 cut(s) 372
AsuII TTCGAA 1 cut(s) 793
AvaII GGWCC 2 cut(s) 336, 785
AvrII CCTAGG 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 877
BaeI ACNNNNGTAYC 1 cut(s) 27
BarI GAAGNNNNNNTAC 2 cut(s) 837, 869
BauI CACGAG 2 cut(s) 30, 202
BbsI GAAGAC 2 cut(s) 213, 485
Bbv12I GWGCWC 1 cut(s) 877
BbvI GCAGC 4 cut(s) 71, 370, 613, 1012
BccI CCATC 3 cut(s) 346, 576, 692
BceAI ACGGC 4 cut(s) 47, 214, 350, 732
BciT130I CCWGG 2 cut(s) 615, 960
BcnI CCSGG 1 cut(s) 372
BcoDI GTCTC 5 cut(s) 18, 85, 306, 842, 967
BfaI CTAG 2 cut(s) 138, 666
BfmI CTRYAG 1 cut(s) 307
BfuAI ACCTGC 1 cut(s) 673
BisI GCNGC 6 cut(s) 60, 175, 287, 384, 627, 1026
BlnI CCTAGG 1 cut(s) 137
BlsI GCNGC 6 cut(s) 61, 176, 288, 385, 628, 1027
Bme1390I CCNGG 3 cut(s) 372, 615, 960
Bme18I GGWCC 2 cut(s) 336, 785
BmgBI CACGTC 1 cut(s) 551
BmgT120I GGNCC 2 cut(s) 336, 785
BmiI GGNNCC 2 cut(s) 786, 822
BmrFI CCNGG 3 cut(s) 372, 615, 960
BmrI ACTGGG 1 cut(s) 483
BmsI GCATC 4 cut(s) 436, 819, 916, 1012
BmuI ACTGGG 1 cut(s) 483
BpiI GAAGAC 2 cut(s) 213, 485
BpmI CTGGAG 1 cut(s) 1050
Bpu10I CCTNAGC 1 cut(s) 393
Bpu14I TTCGAA 1 cut(s) 793
BpuMI CCSGG 1 cut(s) 372
BsaHI GRCGYC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 137, 613
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 959
Bse1I ACTGG 3 cut(s) 478, 788, 936
Bse3DI GCAATG 1 cut(s) 714
BseBI CCWGG 2 cut(s) 615, 960
BseDI CCNNGG 2 cut(s) 137, 613
BseGI GGATG 3 cut(s) 451, 703, 931
BseLI CCNNNNNNNGG 2 cut(s) 352, 959
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 1 cut(s) 816
BseNI ACTGG 3 cut(s) 478, 788, 936
BseRI GAGGAG 2 cut(s) 75, 109
BseSI GKGCMC 1 cut(s) 877
BseXI GCAGC 4 cut(s) 71, 370, 613, 1012
BseYI CCCAGC 1 cut(s) 449
BsgI GTGCAG 2 cut(s) 188, 246
BshFI GGCC 2 cut(s) 239, 365
BsiHKAI GWGCWC 1 cut(s) 877
BsiSI CCGG 2 cut(s) 298, 372
BslFI GGGAC 2 cut(s) 798, 1045
BslI CCNNNNNNNGG 2 cut(s) 352, 959
BsmAI GTCTC 5 cut(s) 18, 85, 306, 842, 967
BsmBI CGTCTC 1 cut(s) 306
BsmFI GGGAC 2 cut(s) 798, 1045
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 2 cut(s) 239, 365
Bsp119I TTCGAA 1 cut(s) 793
Bsp1286I GDGCHC 1 cut(s) 877
Bsp143I GATC 3 cut(s) 602, 962, 984
BspACI CCGC 8 cut(s) 175, 252, 287, 334, 414, 496, 532, 1064
BspANI GGCC 2 cut(s) 239, 365
BspCNI CTCAG 1 cut(s) 817
BspHI TCATGA 1 cut(s) 981
BspLI GGNNCC 2 cut(s) 786, 822
BspMI ACCTGC 1 cut(s) 673
BspPI GGATC 2 cut(s) 610, 970
BspQI GCTCTTC 1 cut(s) 136
BspT104I TTCGAA 1 cut(s) 793
BsrBI CCGCTC 2 cut(s) 496, 532
BsrDI GCAATG 1 cut(s) 714
BsrI ACTGG 3 cut(s) 478, 788, 936
BssECI CCNNGG 2 cut(s) 137, 613
BssMI GATC 3 cut(s) 602, 962, 984
BssNI GRCGYC 1 cut(s) 161
BssSI CACGAG 2 cut(s) 30, 202
BssT1I CCWWGG 1 cut(s) 137
Bst2BI CACGAG 2 cut(s) 30, 202
Bst2UI CCWGG 2 cut(s) 615, 960
Bst4CI ACNGT 4 cut(s) 109, 778, 838, 898
Bst6I CTCTTC 5 cut(s) 23, 136, 250, 840, 983
BstACI GRCGYC 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 793
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 2 cut(s) 393, 825
BstF5I GGATG 3 cut(s) 451, 703, 931
BstKTI GATC 3 cut(s) 605, 965, 987
BstMAI GTCTC 5 cut(s) 18, 85, 306, 842, 967
BstMBI GATC 3 cut(s) 602, 962, 984
BstMWI GCNNNNNNNGC 4 cut(s) 260, 303, 383, 389
BstNI CCWGG 2 cut(s) 615, 960
BstSCI CCNGG 3 cut(s) 370, 613, 958
BstSFI CTRYAG 1 cut(s) 307
BstSLI GKGCMC 1 cut(s) 877
BstV1I GCAGC 4 cut(s) 71, 370, 613, 1012
BstV2I GAAGAC 2 cut(s) 213, 485
BstX2I RGATCY 2 cut(s) 602, 962
BstYI RGATCY 2 cut(s) 602, 962
BsuRI GGCC 2 cut(s) 239, 365
BtgZI GCGATG 1 cut(s) 365
BtrI CACGTC 1 cut(s) 551
BtsCI GGATG 3 cut(s) 451, 703, 931
BtsI GCAGTG 2 cut(s) 258, 296
BtsIMutI CAGTG 5 cut(s) 258, 296, 471, 903, 943
BveI ACCTGC 1 cut(s) 673
Cac8I GCNNGC 1 cut(s) 363
CciI TCATGA 1 cut(s) 981
Cfr13I GGNCC 2 cut(s) 336, 785
CpoI CGGWCCG 1 cut(s) 336
CseI GACGC 1 cut(s) 150
Csp6I GTAC 3 cut(s) 11, 110, 279
CspI CGGWCCG 1 cut(s) 336
CviAII CATG 2 cut(s) 490, 982
CviQI GTAC 3 cut(s) 11, 110, 279
DdeI CTNAG 2 cut(s) 393, 825
DpnI GATC 3 cut(s) 604, 964, 986
DpnII GATC 3 cut(s) 602, 962, 984
Eam1104I CTCTTC 5 cut(s) 23, 136, 250, 840, 983
EarI CTCTTC 5 cut(s) 23, 136, 250, 840, 983
Eco130I CCWWGG 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 336, 785
Eco57I CTGAAG 2 cut(s) 4, 1059
EcoRII CCWGG 2 cut(s) 613, 958
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
Esp3I CGTCTC 1 cut(s) 306
FaeI CATG 2 cut(s) 493, 985
FaiI YATR 9 cut(s) 197, 343, 390, 491, 810, 983, 1013, 1082, 1089
FalI AAGNNNNNCTT 4 cut(s) 411, 443, 861, 893
FaqI GGGAC 2 cut(s) 798, 1045
FatI CATG 2 cut(s) 489, 981
FauI CCCGC 2 cut(s) 525, 1071
Fnu4HI GCNGC 6 cut(s) 60, 175, 287, 384, 627, 1026
FokI GGATG 3 cut(s) 458, 710, 938
Fsp4HI GCNGC 6 cut(s) 60, 175, 287, 384, 627, 1026
FspBI CTAG 2 cut(s) 138, 666
GluI GCNGC 6 cut(s) 60, 175, 287, 384, 627, 1026
GsaI CCCAGC 1 cut(s) 453
GsuI CTGGAG 1 cut(s) 1050
HaeIII GGCC 2 cut(s) 239, 365
HapII CCGG 2 cut(s) 298, 372
HgaI GACGC 1 cut(s) 150
Hin1I GRCGYC 1 cut(s) 161
Hin1II CATG 2 cut(s) 493, 985
HincII GTYRAC 3 cut(s) 67, 765, 774
HindII GTYRAC 3 cut(s) 67, 765, 774
HinfI GANTC 4 cut(s) 99, 422, 975, 1058
HpaI GTTAAC 1 cut(s) 774
HpaII CCGG 2 cut(s) 298, 372
Hpy166II GTNNAC 6 cut(s) 67, 112, 765, 774, 875, 892
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 7 cut(s) 93, 606, 824, 970, 982, 995, 1037
Hpy8I GTNNAC 6 cut(s) 67, 112, 765, 774, 875, 892
Hpy99I CGWCG 7 cut(s) 99, 166, 235, 238, 278, 286, 565
HpyAV CCTTC 4 cut(s) 250, 569, 663, 1067
HpyCH4III ACNGT 4 cut(s) 109, 778, 838, 898
HpyCH4IV ACGT 3 cut(s) 281, 550, 560
HpyCH4V TGCA 6 cut(s) 169, 263, 682, 707, 875, 901
HpyF10VI GCNNNNNNNGC 4 cut(s) 260, 303, 383, 389
HpyF3I CTNAG 2 cut(s) 393, 825
HpySE526I ACGT 3 cut(s) 281, 550, 560
Hsp92I GRCGYC 1 cut(s) 161
Hsp92II CATG 2 cut(s) 493, 985
KspAI GTTAAC 1 cut(s) 774
Kzo9I GATC 3 cut(s) 602, 962, 984
LguI GCTCTTC 1 cut(s) 136
LmnI GCTCC 3 cut(s) 374, 493, 529
Lsp1109I GCAGC 4 cut(s) 71, 370, 613, 1012
LweI GCATC 4 cut(s) 436, 819, 916, 1012
MaeI CTAG 2 cut(s) 138, 666
MaeII ACGT 3 cut(s) 281, 550, 560
MaeIII GTNAC 1 cut(s) 469
MalI GATC 3 cut(s) 604, 964, 986
MbiI CCGCTC 2 cut(s) 496, 532
MboI GATC 3 cut(s) 602, 962, 984
MflI RGATCY 2 cut(s) 602, 962
MhlI GDGCHC 1 cut(s) 877
MluCI AATT 4 cut(s) 321, 586, 722, 752
MlyI GAGTC 2 cut(s) 969, 1067
MmeI TCCRAC 2 cut(s) 566, 1035
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 2 cut(s) 441, 773
MspA1I CMGCKG 2 cut(s) 334, 1066
MspI CCGG 2 cut(s) 298, 372
MspR9I CCNGG 3 cut(s) 372, 615, 960
Mva1269I GAATGC 1 cut(s) 709
MvaI CCWGG 2 cut(s) 615, 960
MwoI GCNNNNNNNGC 4 cut(s) 260, 303, 383, 389
NciI CCSGG 1 cut(s) 372
NdeII GATC 3 cut(s) 602, 962, 984
NlaIII CATG 2 cut(s) 493, 985
NlaIV GGNNCC 2 cut(s) 786, 822
NmeAIII GCCGAG 1 cut(s) 371
NmuCI GTSAC 1 cut(s) 469
NspV TTCGAA 1 cut(s) 793
PagI TCATGA 1 cut(s) 981
PaqCI CACCTGC 1 cut(s) 673
PciSI GCTCTTC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 209
PctI GAATGC 1 cut(s) 709
PdmI GAANNNNTTC 1 cut(s) 426
PfeI GAWTC 2 cut(s) 99, 422
PflFI GACNNNGTC 1 cut(s) 217
PfoI TCCNGGA 1 cut(s) 370
PkrI GCNGC 6 cut(s) 61, 176, 288, 385, 628, 1027
PleI GAGTC 2 cut(s) 969, 1066
PpsI GAGTC 2 cut(s) 969, 1066
PsiI TTATAA 1 cut(s) 1013
Psp6I CCWGG 2 cut(s) 613, 958
PspFI CCCAGC 1 cut(s) 449
PspGI CCWGG 2 cut(s) 613, 958
PspN4I GGNNCC 2 cut(s) 786, 822
PspPI GGNCC 2 cut(s) 336, 785
PsuI RGATCY 2 cut(s) 602, 962
PsyI GACNNNGTC 1 cut(s) 217
RsaI GTAC 3 cut(s) 12, 111, 280
RsaNI GTAC 3 cut(s) 11, 110, 279
Rsr2I CGGWCCG 1 cut(s) 336
RsrII CGGWCCG 1 cut(s) 336
SapI GCTCTTC 1 cut(s) 136
SaqAI TTAA 2 cut(s) 441, 773
SatI GCNGC 6 cut(s) 60, 175, 287, 384, 627, 1026
Sau3AI GATC 3 cut(s) 602, 962, 984
Sau96I GGNCC 2 cut(s) 336, 785
SchI GAGTC 2 cut(s) 969, 1067
ScrFI CCNGG 3 cut(s) 372, 615, 960
SduI GDGCHC 1 cut(s) 877
SfaNI GCATC 4 cut(s) 436, 819, 916, 1012
SfcI CTRYAG 1 cut(s) 307
SfuI TTCGAA 1 cut(s) 793
SinI GGWCC 2 cut(s) 336, 785
Sse9I AATT 4 cut(s) 321, 586, 722, 752
SsiI CCGC 8 cut(s) 175, 252, 287, 334, 414, 496, 532, 1064
SspMI CTAG 2 cut(s) 138, 666
StyD4I CCNGG 3 cut(s) 370, 613, 958
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 4 cut(s) 109, 778, 838, 898
TaiI ACGT 3 cut(s) 284, 553, 563
TaqI TCGA 5 cut(s) 212, 591, 740, 793, 969
TasI AATT 4 cut(s) 321, 586, 722, 752
TatI WGTACW 1 cut(s) 109
TauI GCSGC 2 cut(s) 177, 289
TfiI GAWTC 2 cut(s) 99, 422
Tru1I TTAA 2 cut(s) 441, 773
Tru9I TTAA 2 cut(s) 441, 773
TscAI CASTG 5 cut(s) 265, 296, 478, 903, 943
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 4 cut(s) 59, 383, 626, 1025
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 2 cut(s) 812, 970
TspGWI ACGGA 3 cut(s) 262, 328, 1016
TspRI CASTG 5 cut(s) 265, 296, 478, 903, 943
Tth111I GACNNNGTC 1 cut(s) 217
VneI GTGCAC 1 cut(s) 873
VpaK11BI GGWCC 2 cut(s) 336, 785
XapI RAATTY 2 cut(s) 586, 752
XcmI CCANNNNNNNNNTGG 1 cut(s) 775
XmaJI CCTAGG 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 426
XspI CTAG 2 cut(s) 138, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.