Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004957

Physical Location & Seq

Genomic Coordinates Forward (+)

4406065 .. 4411156

Gene Structure 5092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g04700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCGTCGGTGCAGAGCCAGCTCTCTGCTTTTTCTTCCATAGCCTCGTGCTATTTGACTTCGTCTTCTTCGCCGTCGTCGGCCTTCTCTTCCACCGCCACCACTGCACTGGTTTCCGTCGGCAGGTCGCCGCAGCGTCGTCTGAAATTCTACGGAGACGGGAGAATTCGCCTCCAGCGGTCCGTATGCCGAGCGATGGTTCAGCAGGCCGTTCCCGGAGCTCCTGCTGCCTATGCTAAGGAAATGGAGAGGCTTTCCGCTAAAGAATCGCTTCTTCTCGCCTTTAAGGATGCTGGGGGTTTTGAGGCTTTAGTCACTGGGAAGACAACAGACATGGAGCGAATTGATGTGAATGAAAGGATAACTGCTTTGGAGCGGGTCAATCCAACACCACGTCCTACAACGTCGCCTTTTTTGGAAGGTCGATGGAACTTCGAGTGGTTTGGATCTGGAAGCCCAGGTCTTTTTGCTGCCAGATTTTTGTTTGAGAGGTTTCCTTCAACTTTGGCTAGTTTGACAAAAATGCAGGTGGTCATCAAGGATGGGAATGCAATGATTACGGCAAAATTGAAAGTGTTCAACTCGATAGAAAGCAAATTTACTTTGTCAACCAAGTTAACTGTGGAGGGACCAGTTCGAATGAAAGAGGAATATGTTGAGGGGATTCTTGAGACACCAAAAGTTATTGAAGAGACAATACCAGACCAGCTAAAAGGTGCACTTGGTCAGGCTGTAAACACAGTGCAACAACTTCCTCTGGCTATTAGGGATGCCTTTTCCAGTGGGCTGAAAGTTCCTTTAACTGGATCTTTCGAGAGACTCTTCATGATCTCCTATCTTGATACCGAGATACTTATAATACGAGATGCTGCTGGAGTTCCTGAAGTGCTTACCAGGCTGGAAGAAGGCATCATAGAGTATGAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

310

Amino Acids

33.84

Weight (kDa)

7.68

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004957)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42130 AT2G42130 AT2G42130 AT2G42130 AT2G42130 AT3G58010 AT3G58010
fragaria_vesca	FvH4_6g22380 FvH4_6g22380
malus_domestica	MD12G1057400.v1.1 MD14G1058000.v1.1
prunus_persica	Prupe.7G076700_v2.0.a1 Prupe.7G076700_v2.0.a1 Prupe.7G076700_v2.0.a1 Prupe.7G076700_v2.0.a1 Prupe.7G076700_v2.0.a1
pyrus_communis	pycom12g05110 pycom14g04700
rosa_chinensis	RchiOBHm_Chr3g0479711
rosa_laevigata	RLG00000023547
rosa_multiflora	Rmu_sc0003755.1_g000009
rosa_roxburghii	Rroxscaffold_6G00402050
rosa_rugosa	Rorug03G0177700 Rorug03G0177800
rosa_samantha	Rh3AG228500 Rh3BG261500 Rh3CG258600 Rh3DG254800
rosa_wichuraiana	Rw3G020430 Rw3G020500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	857
AarI	CACCTGC	1 cut(s)	517
Acc36I	ACCTGC	2 cut(s)	114, 517
AccBSI	CCGCTC	1 cut(s)	376
AciI	CCGC	5 cut(s)	96, 131, 178, 258, 376
AclWI	GGATC	2 cut(s)	454, 814
AcsI	RAATTY	3 cut(s)	146, 165, 596
AcuI	CTGAAG	1 cut(s)	903
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	123, 196, 803
AgsI	TTSAA	4 cut(s)	501, 571, 580, 689
AjiI	CACGTC	1 cut(s)	395
AjnI	CCWGG	2 cut(s)	457, 893
AluBI	AGCT	4 cut(s)	22, 221, 709, 927
AluI	AGCT	4 cut(s)	22, 221, 709, 927
Alw21I	GWGCWC	2 cut(s)	223, 721
Alw26I	GTCTC	4 cut(s)	150, 665, 686, 811
Alw44I	GTGCAC	1 cut(s)	717
AlwI	GGATC	2 cut(s)	454, 814
AoxI	GGCC	2 cut(s)	81, 207
ApaLI	GTGCAC	1 cut(s)	717
ApeKI	GCWGC	4 cut(s)	133, 227, 470, 869
ApoI	RAATTY	3 cut(s)	146, 165, 596
Asp700I	GAANNNNTTC	2 cut(s)	270, 575
AspS9I	GGNCC	2 cut(s)	180, 629
AsuC2I	CCSGG	1 cut(s)	216
AsuII	TTCGAA	1 cut(s)	637
AvaII	GGWCC	2 cut(s)	180, 629
BaeGI	GKGCMC	1 cut(s)	721
BanII	GRGCYC	1 cut(s)	223
BarI	GAAGNNNNNNTAC	2 cut(s)	681, 713
BauI	CACGAG	1 cut(s)	46
BbsI	GAAGAC	2 cut(s)	57, 329
Bbv12I	GWGCWC	2 cut(s)	223, 721
BbvI	GCAGC	4 cut(s)	145, 214, 457, 856
BccI	CCATC	3 cut(s)	190, 420, 536
BceAI	ACGGC	3 cut(s)	58, 194, 576
BciT130I	CCWGG	2 cut(s)	459, 895
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	4 cut(s)	150, 665, 686, 811
BfaI	CTAG	1 cut(s)	510
BfuAI	ACCTGC	2 cut(s)	114, 517
BisI	GCNGC	5 cut(s)	131, 134, 228, 471, 870
BlsI	GCNGC	5 cut(s)	132, 135, 229, 472, 871
Bme1390I	CCNGG	3 cut(s)	216, 459, 895
Bme18I	GGWCC	2 cut(s)	180, 629
BmgBI	CACGTC	1 cut(s)	395
BmgT120I	GGNCC	2 cut(s)	180, 629
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	3 cut(s)	216, 459, 895
BmrI	ACTGGG	1 cut(s)	327
BmsI	GCATC	4 cut(s)	280, 760, 856, 918
BmuI	ACTGGG	1 cut(s)	327
BpiI	GAAGAC	2 cut(s)	57, 329
BpmI	CTGGAG	2 cut(s)	158, 894
Bpu10I	CCTNAGC	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	637
BpuEI	CTTGAG	1 cut(s)	689
BpuMI	CCSGG	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 196, 803
Bse1I	ACTGG	5 cut(s)	114, 322, 632, 780, 808
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	459, 895
BseDI	CCNNGG	1 cut(s)	457
BseGI	GGATG	3 cut(s)	295, 547, 775
BseLI	CCNNNNNNNGG	3 cut(s)	123, 196, 803
BseMI	GCAATG	1 cut(s)	558
BseNI	ACTGG	5 cut(s)	114, 322, 632, 780, 808
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	4 cut(s)	145, 214, 457, 856
BseYI	CCCAGC	1 cut(s)	293
BsgI	GTGCAG	2 cut(s)	32, 90
BshFI	GGCC	2 cut(s)	83, 209
BsiHKAI	GWGCWC	2 cut(s)	223, 721
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	3 cut(s)	123, 196, 803
BsmAI	GTCTC	4 cut(s)	150, 665, 686, 811
BsmBI	CGTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	642
BsmI	GAATGC	1 cut(s)	553
BsnI	GGCC	2 cut(s)	83, 209
Bsp119I	TTCGAA	1 cut(s)	637
Bsp1286I	GDGCHC	2 cut(s)	223, 721
Bsp143I	GATC	3 cut(s)	446, 806, 828
BspACI	CCGC	5 cut(s)	96, 131, 178, 258, 376
BspANI	GGCC	2 cut(s)	83, 209
BspHI	TCATGA	1 cut(s)	825
BspLI	GGNNCC	1 cut(s)	630
BspMI	ACCTGC	2 cut(s)	114, 517
BspPI	GGATC	2 cut(s)	454, 814
BspT104I	TTCGAA	1 cut(s)	637
BsrBI	CCGCTC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	558
BsrI	ACTGG	5 cut(s)	114, 322, 632, 780, 808
BssECI	CCNNGG	1 cut(s)	457
BssMI	GATC	3 cut(s)	446, 806, 828
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	46
Bst2BI	CACGAG	1 cut(s)	46
Bst2UI	CCWGG	2 cut(s)	459, 895
Bst4CI	ACNGT	2 cut(s)	622, 742
Bst6I	CTCTTC	3 cut(s)	94, 684, 827
BstACI	GRCGYC	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	637
BstC8I	GCNNGC	2 cut(s)	20, 207
BstDEI	CTNAG	1 cut(s)	237
BstF5I	GGATG	3 cut(s)	295, 547, 775
BstKTI	GATC	3 cut(s)	449, 809, 831
BstMAI	GTCTC	4 cut(s)	150, 665, 686, 811
BstMBI	GATC	3 cut(s)	446, 806, 828
BstMWI	GCNNNNNNNGC	5 cut(s)	19, 104, 227, 233, 895
BstNI	CCWGG	2 cut(s)	459, 895
BstSCI	CCNGG	3 cut(s)	214, 457, 893
BstSLI	GKGCMC	1 cut(s)	721
BstV1I	GCAGC	4 cut(s)	145, 214, 457, 856
BstV2I	GAAGAC	2 cut(s)	57, 329
BstX2I	RGATCY	2 cut(s)	446, 806
BstXI	CCANNNNNNTGG	1 cut(s)	109
BstYI	RGATCY	2 cut(s)	446, 806
BsuRI	GGCC	2 cut(s)	83, 209
BtgZI	GCGATG	1 cut(s)	209
BtrI	CACGTC	1 cut(s)	395
BtsCI	GGATG	3 cut(s)	295, 547, 775
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	5 cut(s)	102, 107, 315, 747, 787
BveI	ACCTGC	2 cut(s)	114, 517
Cac8I	GCNNGC	2 cut(s)	20, 207
CciI	TCATGA	1 cut(s)	825
Cfr13I	GGNCC	2 cut(s)	180, 629
CpoI	CGGWCCG	1 cut(s)	180
CseI	GACGC	1 cut(s)	125
CspI	CGGWCCG	1 cut(s)	180
CviAII	CATG	2 cut(s)	334, 826
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	3 cut(s)	448, 808, 830
DpnII	GATC	3 cut(s)	446, 806, 828
Eam1104I	CTCTTC	3 cut(s)	94, 684, 827
EarI	CTCTTC	3 cut(s)	94, 684, 827
Ecl136II	GAGCTC	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	180, 629
Eco53kI	GAGCTC	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	903
EcoICRI	GAGCTC	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	165
EcoRII	CCWGG	2 cut(s)	457, 893
EcoT38I	GRGCYC	1 cut(s)	223
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	2 cut(s)	337, 829
FaiI	YATR	9 cut(s)	41, 187, 234, 335, 654, 827, 857, 914, 921
FalI	AAGNNNNNCTT	4 cut(s)	255, 287, 705, 737
FaqI	GGGAC	1 cut(s)	642
FatI	CATG	2 cut(s)	333, 825
FauI	CCCGC	1 cut(s)	369
Fnu4HI	GCNGC	5 cut(s)	131, 134, 228, 471, 870
FokI	GGATG	3 cut(s)	302, 554, 782
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	5 cut(s)	131, 134, 228, 471, 870
FspBI	CTAG	1 cut(s)	510
GluI	GCNGC	5 cut(s)	131, 134, 228, 471, 870
GsaI	CCCAGC	1 cut(s)	297
GsuI	CTGGAG	2 cut(s)	158, 894
HaeIII	GGCC	2 cut(s)	83, 209
HapII	CCGG	1 cut(s)	216
HgaI	GACGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	337, 829
HincII	GTYRAC	2 cut(s)	609, 618
HindII	GTYRAC	2 cut(s)	609, 618
HinfI	GANTC	3 cut(s)	266, 664, 819
HpaI	GTTAAC	1 cut(s)	618
HpaII	CCGG	1 cut(s)	216
Hpy166II	GTNNAC	4 cut(s)	609, 618, 719, 736
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	6 cut(s)	450, 668, 814, 826, 839, 881
Hpy8I	GTNNAC	4 cut(s)	609, 618, 719, 736
Hpy99I	CGWCG	6 cut(s)	10, 79, 82, 122, 141, 409
HpyAV	CCTTC	4 cut(s)	94, 413, 507, 899
HpyCH4III	ACNGT	2 cut(s)	622, 742
HpyCH4IV	ACGT	2 cut(s)	394, 404
HpyCH4V	TGCA	6 cut(s)	13, 107, 526, 551, 719, 745
HpyF10VI	GCNNNNNNNGC	5 cut(s)	19, 104, 227, 233, 895
HpyF3I	CTNAG	1 cut(s)	237
HpySE526I	ACGT	2 cut(s)	394, 404
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	337, 829
KspAI	GTTAAC	1 cut(s)	618
Kzo9I	GATC	3 cut(s)	446, 806, 828
LmnI	GCTCC	4 cut(s)	218, 226, 337, 373
Lsp1109I	GCAGC	4 cut(s)	145, 214, 457, 856
LweI	GCATC	4 cut(s)	280, 760, 856, 918
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	2 cut(s)	394, 404
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	3 cut(s)	448, 808, 830
MbiI	CCGCTC	1 cut(s)	376
MboI	GATC	3 cut(s)	446, 806, 828
MboII	GAAGA	9 cut(s)	27, 57, 60, 81, 266, 334, 701, 814, 914
MflI	RGATCY	2 cut(s)	446, 806
MhlI	GDGCHC	2 cut(s)	223, 721
MluCI	AATT	5 cut(s)	146, 165, 342, 566, 596
MlyI	GAGTC	1 cut(s)	813
MmeI	TCCRAC	1 cut(s)	410
MnlI	CCTC	9 cut(s)	55, 182, 243, 298, 483, 619, 640, 652, 765
MroXI	GAANNNNTTC	2 cut(s)	270, 575
MseI	TTAA	3 cut(s)	285, 617, 800
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	3 cut(s)	216, 459, 895
Mva1269I	GAATGC	1 cut(s)	553
MvaI	CCWGG	2 cut(s)	459, 895
MwoI	GCNNNNNNNGC	5 cut(s)	19, 104, 227, 233, 895
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	3 cut(s)	446, 806, 828
NlaIII	CATG	2 cut(s)	337, 829
NlaIV	GGNNCC	1 cut(s)	630
NmeAIII	GCCGAG	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	313
NspV	TTCGAA	1 cut(s)	637
PagI	TCATGA	1 cut(s)	825
PaqCI	CACCTGC	1 cut(s)	517
PctI	GAATGC	1 cut(s)	553
PdmI	GAANNNNTTC	2 cut(s)	270, 575
PfeI	GAWTC	2 cut(s)	266, 664
PflFI	GACNNNGTC	1 cut(s)	61
PfoI	TCCNGGA	1 cut(s)	214
PkrI	GCNGC	5 cut(s)	132, 135, 229, 472, 871
PleI	GAGTC	1 cut(s)	813
PpsI	GAGTC	1 cut(s)	813
PsiI	TTATAA	1 cut(s)	857
Psp124BI	GAGCTC	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	457, 893
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	2 cut(s)	457, 893
PspN4I	GGNNCC	1 cut(s)	630
PspPI	GGNCC	2 cut(s)	180, 629
PsuI	RGATCY	2 cut(s)	446, 806
PsyI	GACNNNGTC	1 cut(s)	61
Rsr2I	CGGWCCG	1 cut(s)	180
RsrII	CGGWCCG	1 cut(s)	180
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	3 cut(s)	285, 617, 800
SatI	GCNGC	5 cut(s)	131, 134, 228, 471, 870
Sau3AI	GATC	3 cut(s)	446, 806, 828
Sau96I	GGNCC	2 cut(s)	180, 629
SchI	GAGTC	1 cut(s)	813
ScrFI	CCNGG	3 cut(s)	216, 459, 895
SduI	GDGCHC	2 cut(s)	223, 721
SfaNI	GCATC	4 cut(s)	280, 760, 856, 918
SfuI	TTCGAA	1 cut(s)	637
SinI	GGWCC	2 cut(s)	180, 629
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	5 cut(s)	146, 165, 342, 566, 596
SsiI	CCGC	5 cut(s)	96, 131, 178, 258, 376
SspMI	CTAG	1 cut(s)	510
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	3 cut(s)	214, 457, 893
TaaI	ACNGT	2 cut(s)	622, 742
TaiI	ACGT	2 cut(s)	397, 407
TaqI	TCGA	5 cut(s)	424, 435, 584, 637, 813
TasI	AATT	5 cut(s)	146, 165, 342, 566, 596
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	2 cut(s)	266, 664
Tru1I	TTAA	3 cut(s)	285, 617, 800
Tru9I	TTAA	3 cut(s)	285, 617, 800
TscAI	CASTG	5 cut(s)	109, 114, 322, 747, 787
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	4 cut(s)	133, 227, 470, 869
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	3 cut(s)	369, 656, 814
TspGWI	ACGGA	3 cut(s)	106, 168, 172
TspRI	CASTG	5 cut(s)	109, 114, 322, 747, 787
Tth111I	GACNNNGTC	1 cut(s)	61
VneI	GTGCAC	1 cut(s)	717
VpaK11BI	GGWCC	2 cut(s)	180, 629
XapI	RAATTY	3 cut(s)	146, 165, 596
XcmI	CCANNNNNNNNNTGG	2 cut(s)	106, 619
XmnI	GAANNNNTTC	2 cut(s)	270, 575
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.