FvH4_6g22380

plastid-lipid-associated protein 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004957
Physical Location & Seq
Forward (+)
16054407 .. 16061311
6905 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22380.t1

Sequence Viewer

Length: 936 bp
ATGGCGACCTTACAGAGCCAGCTCTCTGCGATTTCGGTGATCGGCTCCTGTTGCTCGTCTTCGTCGTCGTCTTCCTCCACCGCCACCACCTCACTGGTCTCCGTCGCCAGGCGGCCGCACTCCGGCCGGAAAGTCCCCGACGACCGGAGGCGGAGTCTGCAGAGGTCCGTTGTCCGAGCAATGGTTCAGCAGGTCGTGCCCGGAGCTCCGGCGGCCTATGCTAAGGAAATGGAGAGGCTCTCCGCTAAAGAATCACTGCTTCTCGCCTTCAAAGATGCTGGGGGTTTCGAGGCATTAGTCACTGGAAAGACGACAGACATGCAGCGCATTGATGTCAATGAGAGGATTACTGCTTTGGAGCGGGTCAATCCAACTCCGCGCCCTACAACGTCTCCCTTTTTGGAAGGACGATGGAATTTCGAGTGGTTTGGGTCCGGAAGCCCTGGTTTATTTGCTGCAAGATTTCTGTTTGAGAGATTTCCTTCAACATTGGCCAGTTTGTCAAAAATGGAGGTGCTCATCAAGGATGGGAATGCAAAGATTACCGCAAACATGAAAATATTGAACTCGATAGAAAGCAAATTTTCTCTGTCAACCAAGTTGTCAGTGGAGGGACCAGTTAGAATGAAAGAGGAATATGTTGAGGGGGTTCTCGACACACCAACAGTTATTCAAGAAACAATACCAGAACAGCTAAAAGGTGCACTTGGTCAGGCAATAAACACAGTGCAACAGCTTCCTGTTCCAATTAGGGATGCCTTAGCCAGTGGGCTGAGAGTTCCTTTAACTGGAGCTTTCGAGAGACTCTTCATGATTTCCTATCTTGATATGGAGATAATGATTATAAGAGATGCTGCTGGAGTTCCTGAAATACTTACAAGGTTAGATTCACCCTCATCTCCCCTGGCTGAAACCATCCCGGAGTATGAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

312

Amino Acids

33.88

Weight (kDa)

7.72

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 104 - 288 1.6e-11 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 845
Acc36I ACCTGC 1 cut(s) 181
AccBSI CCGCTC 1 cut(s) 361
AccII CGCG 1 cut(s) 379
AccIII TCCGGA 1 cut(s) 434
AciI CCGC 9 cut(s) 81, 112, 116, 151, 212, 243, 361, 377, 546
AcoI YGGCCR 3 cut(s) 113, 124, 492
AcsI RAATTY 2 cut(s) 415, 581
AfiI CCNNNNNNNGG 5 cut(s) 108, 122, 144, 181, 788
AgsI TTSAA 4 cut(s) 271, 486, 565, 674
AjnI CCWGG 3 cut(s) 107, 442, 903
AluBI AGCT 6 cut(s) 22, 206, 694, 736, 794, 933
AluI AGCT 6 cut(s) 22, 206, 694, 736, 794, 933
Alw21I GWGCWC 3 cut(s) 208, 519, 706
Alw26I GTCTC 3 cut(s) 103, 396, 796
Alw44I GTGCAC 1 cut(s) 702
Aor13HI TCCGGA 1 cut(s) 434
AoxI GGCC 4 cut(s) 113, 124, 213, 492
ApaLI GTGCAC 1 cut(s) 702
ApeKI GCWGC 3 cut(s) 322, 455, 854
ApoI RAATTY 2 cut(s) 415, 581
AspLEI GCGC 2 cut(s) 327, 381
AspS9I GGNCC 3 cut(s) 165, 432, 614
AsuC2I CCSGG 2 cut(s) 201, 920
AsuHPI GGTGA 2 cut(s) 49, 882
AvaII GGWCC 3 cut(s) 165, 432, 614
BaeGI GKGCMC 2 cut(s) 201, 706
BalI TGGCCA 1 cut(s) 494
BanII GRGCYC 1 cut(s) 208
BbsI GAAGAC 2 cut(s) 51, 63
Bbv12I GWGCWC 3 cut(s) 208, 519, 706
BbvI GCAGC 3 cut(s) 334, 442, 841
BccI CCATC 3 cut(s) 405, 521, 923
BcgI CGANNNNNNTGC 2 cut(s) 301, 335
BciT130I CCWGG 3 cut(s) 109, 444, 905
BcnI CCSGG 2 cut(s) 201, 920
BcoDI GTCTC 3 cut(s) 103, 396, 796
BfmI CTRYAG 1 cut(s) 158
BfuAI ACCTGC 1 cut(s) 181
BisI GCNGC 6 cut(s) 113, 116, 213, 323, 456, 855
BlsI GCNGC 6 cut(s) 114, 117, 214, 324, 457, 856
Bme1390I CCNGG 5 cut(s) 109, 201, 444, 905, 920
Bme18I GGWCC 3 cut(s) 165, 432, 614
BmgT120I GGNCC 3 cut(s) 165, 432, 614
BmiI GGNNCC 3 cut(s) 46, 433, 615
BmrFI CCNGG 5 cut(s) 109, 201, 444, 905, 920
BmsI GCATC 3 cut(s) 265, 745, 841
BpiI GAAGAC 2 cut(s) 51, 63
BplI GAGNNNNNCTC 2 cut(s) 224, 256
BpmI CTGGAG 2 cut(s) 810, 879
Bpu10I CCTNAGC 2 cut(s) 222, 760
BpuMI CCSGG 2 cut(s) 201, 920
BsaI GGTCTC 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 442, 903
BsaWI WCCGGW 2 cut(s) 144, 434
BsaXI ACNNNNNCTCC 4 cut(s) 139, 169, 376, 406
Bsc4I CCNNNNNNNGG 5 cut(s) 108, 122, 144, 181, 788
Bse1I ACTGG 6 cut(s) 99, 307, 495, 617, 765, 793
Bse3DI GCAATG 1 cut(s) 186
BseAI TCCGGA 1 cut(s) 434
BseBI CCWGG 3 cut(s) 109, 444, 905
BseDI CCNNGG 2 cut(s) 442, 903
BseGI GGATG 3 cut(s) 532, 760, 915
BseLI CCNNNNNNNGG 5 cut(s) 108, 122, 144, 181, 788
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 764
BseNI ACTGG 6 cut(s) 99, 307, 495, 617, 765, 793
BseSI GKGCMC 2 cut(s) 201, 706
BseX3I CGGCCG 2 cut(s) 113, 124
BseXI GCAGC 3 cut(s) 334, 442, 841
BseYI CCCAGC 1 cut(s) 278
Bsh1236I CGCG 1 cut(s) 379
Bsh1285I CGRYCG 3 cut(s) 116, 127, 145
BshFI GGCC 4 cut(s) 115, 126, 215, 494
BsiEI CGRYCG 3 cut(s) 116, 127, 145
BsiHKAI GWGCWC 3 cut(s) 208, 519, 706
BsiSI CCGG 7 cut(s) 123, 127, 145, 201, 209, 435, 920
BslFI GGGAC 2 cut(s) 119, 627
BslI CCNNNNNNNGG 5 cut(s) 108, 122, 144, 181, 788
BsmAI GTCTC 3 cut(s) 103, 396, 796
BsmBI CGTCTC 1 cut(s) 396
BsmFI GGGAC 2 cut(s) 119, 627
BsmI GAATGC 1 cut(s) 538
BsnI GGCC 4 cut(s) 115, 126, 215, 494
Bso31I GGTCTC 1 cut(s) 103
Bsp1286I GDGCHC 4 cut(s) 201, 208, 519, 706
Bsp13I TCCGGA 1 cut(s) 434
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 9 cut(s) 81, 112, 116, 151, 212, 243, 361, 377, 546
BspANI GGCC 4 cut(s) 115, 126, 215, 494
BspCNI CTCAG 1 cut(s) 765
BspEI TCCGGA 1 cut(s) 434
BspFNI CGCG 1 cut(s) 379
BspHI TCATGA 1 cut(s) 810
BspLI GGNNCC 3 cut(s) 46, 433, 615
BspMAI CTGCAG 1 cut(s) 162
BspMI ACCTGC 1 cut(s) 181
BspTNI GGTCTC 1 cut(s) 103
BsrBI CCGCTC 1 cut(s) 361
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 6 cut(s) 99, 307, 495, 617, 765, 793
BssECI CCNNGG 2 cut(s) 442, 903
BssMI GATC 1 cut(s) 39
Bst2UI CCWGG 3 cut(s) 109, 444, 905
Bst4CI ACNGT 2 cut(s) 667, 727
Bst6I CTCTTC 1 cut(s) 812
BstAPI GCANNNNNTGC 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 3 cut(s) 222, 760, 773
BstF5I GGATG 3 cut(s) 532, 760, 915
BstFNI CGCG 1 cut(s) 379
BstHHI GCGC 2 cut(s) 327, 381
BstKTI GATC 1 cut(s) 42
BstMAI GTCTC 3 cut(s) 103, 396, 796
BstMBI GATC 1 cut(s) 39
BstMCI CGRYCG 3 cut(s) 116, 127, 145
BstMWI GCNNNNNNNGC 5 cut(s) 51, 157, 196, 212, 218
BstNI CCWGG 3 cut(s) 109, 444, 905
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 5 cut(s) 107, 199, 442, 903, 918
BstSFI CTRYAG 1 cut(s) 158
BstSLI GKGCMC 2 cut(s) 201, 706
BstUI CGCG 1 cut(s) 379
BstV1I GCAGC 3 cut(s) 334, 442, 841
BstV2I GAAGAC 2 cut(s) 51, 63
BstXI CCANNNNNNTGG 1 cut(s) 94
BstZI CGGCCG 2 cut(s) 113, 124
BsuRI GGCC 4 cut(s) 115, 126, 215, 494
BtsCI GGATG 3 cut(s) 532, 760, 915
BtsI GCAGTG 1 cut(s) 254
BtsIMutI CAGTG 6 cut(s) 92, 254, 300, 612, 732, 772
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 1 cut(s) 20
CciI TCATGA 1 cut(s) 810
CciNI GCGGCCGC 1 cut(s) 113
CfoI GCGC 2 cut(s) 327, 381
Cfr13I GGNCC 3 cut(s) 165, 432, 614
CviAII CATG 3 cut(s) 319, 553, 811
DdeI CTNAG 3 cut(s) 222, 760, 773
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
EaeI YGGCCR 3 cut(s) 113, 124, 492
EagI CGGCCG 2 cut(s) 113, 124
Eam1104I CTCTTC 1 cut(s) 812
EarI CTCTTC 1 cut(s) 812
EciI GGCGGA 1 cut(s) 166
Ecl136II GAGCTC 1 cut(s) 206
EclXI CGGCCG 2 cut(s) 113, 124
Eco24I GRGCYC 1 cut(s) 208
Eco31I GGTCTC 1 cut(s) 103
Eco47I GGWCC 3 cut(s) 165, 432, 614
Eco52I CGGCCG 2 cut(s) 113, 124
Eco53kI GAGCTC 1 cut(s) 206
EcoICRI GAGCTC 1 cut(s) 206
EcoRII CCWGG 3 cut(s) 107, 442, 903
EcoT38I GRGCYC 1 cut(s) 208
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 3 cut(s) 322, 556, 814
FaiI YATR 8 cut(s) 219, 320, 554, 639, 812, 830, 845, 927
FalI AAGNNNNNCTT 2 cut(s) 690, 722
FaqI GGGAC 2 cut(s) 119, 627
FatI CATG 3 cut(s) 318, 552, 810
FauI CCCGC 1 cut(s) 354
Fnu4HI GCNGC 6 cut(s) 113, 116, 213, 323, 456, 855
FokI GGATG 3 cut(s) 539, 767, 902
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 6 cut(s) 113, 116, 213, 323, 456, 855
GlaI GCGC 2 cut(s) 326, 380
GluI GCNGC 6 cut(s) 113, 116, 213, 323, 456, 855
GsaI CCCAGC 1 cut(s) 282
GsuI CTGGAG 2 cut(s) 810, 879
HaeIII GGCC 4 cut(s) 115, 126, 215, 494
HapII CCGG 7 cut(s) 123, 127, 145, 201, 209, 435, 920
HhaI GCGC 2 cut(s) 327, 381
Hin1II CATG 3 cut(s) 322, 556, 814
Hin6I GCGC 2 cut(s) 325, 379
HinP1I GCGC 2 cut(s) 325, 379
HincII GTYRAC 1 cut(s) 594
HindII GTYRAC 1 cut(s) 594
HinfI GANTC 4 cut(s) 154, 251, 804, 887
HpaII CCGG 7 cut(s) 123, 127, 145, 201, 209, 435, 920
HphI GGTGA 2 cut(s) 49, 882
Hpy166II GTNNAC 2 cut(s) 594, 704
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 7 cut(s) 435, 653, 674, 799, 811, 824, 866
Hpy8I GTNNAC 2 cut(s) 594, 704
Hpy99I CGWCG 4 cut(s) 67, 70, 107, 143
HpyAV CCTTC 3 cut(s) 277, 398, 492
HpyCH4III ACNGT 2 cut(s) 667, 727
HpyCH4IV ACGT 1 cut(s) 389
HpyCH4V TGCA 6 cut(s) 160, 322, 458, 536, 704, 730
HpyF10VI GCNNNNNNNGC 5 cut(s) 51, 157, 196, 212, 218
HpyF3I CTNAG 3 cut(s) 222, 760, 773
HpySE526I ACGT 1 cut(s) 389
Hsp92II CATG 3 cut(s) 322, 556, 814
HspAI GCGC 2 cut(s) 325, 379
Kpn2I TCCGGA 1 cut(s) 434
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 5 cut(s) 50, 203, 211, 358, 791
Lsp1109I GCAGC 3 cut(s) 334, 442, 841
LweI GCATC 3 cut(s) 265, 745, 841
MaeII ACGT 1 cut(s) 389
MaeIII GTNAC 1 cut(s) 298
MalI GATC 1 cut(s) 41
MbiI CCGCTC 1 cut(s) 361
MboI GATC 1 cut(s) 39
MboII GAAGA 3 cut(s) 51, 63, 799
MhlI GDGCHC 4 cut(s) 201, 208, 519, 706
MlsI TGGCCA 1 cut(s) 494
MluCI AATT 3 cut(s) 415, 581, 747
MluNI TGGCCA 1 cut(s) 494
MlyI GAGTC 2 cut(s) 163, 798
MmeI TCCRAC 1 cut(s) 395
Mox20I TGGCCA 1 cut(s) 494
MroI TCCGGA 1 cut(s) 434
MscI TGGCCA 1 cut(s) 494
MseI TTAA 1 cut(s) 785
Msp20I TGGCCA 1 cut(s) 494
MspI CCGG 7 cut(s) 123, 127, 145, 201, 209, 435, 920
MspR9I CCNGG 5 cut(s) 109, 201, 444, 905, 920
Mva1269I GAATGC 1 cut(s) 538
MvaI CCWGG 3 cut(s) 109, 444, 905
MvnI CGCG 1 cut(s) 379
MwoI GCNNNNNNNGC 5 cut(s) 51, 157, 196, 212, 218
NciI CCSGG 2 cut(s) 201, 920
NdeII GATC 1 cut(s) 39
NlaIII CATG 3 cut(s) 322, 556, 814
NlaIV GGNNCC 3 cut(s) 46, 433, 615
NmuCI GTSAC 1 cut(s) 298
NotI GCGGCCGC 1 cut(s) 113
NspI RCATGY 1 cut(s) 322
PagI TCATGA 1 cut(s) 810
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PctI GAATGC 1 cut(s) 538
PfeI GAWTC 2 cut(s) 251, 887
PfoI TCCNGGA 1 cut(s) 918
PkrI GCNGC 6 cut(s) 114, 117, 214, 324, 457, 856
PleI GAGTC 2 cut(s) 162, 798
PpsI GAGTC 2 cut(s) 162, 798
PsiI TTATAA 1 cut(s) 845
Psp124BI GAGCTC 1 cut(s) 208
Psp6I CCWGG 3 cut(s) 107, 442, 903
PspFI CCCAGC 1 cut(s) 278
PspGI CCWGG 3 cut(s) 107, 442, 903
PspN4I GGNNCC 3 cut(s) 46, 433, 615
PspPI GGNCC 3 cut(s) 165, 432, 614
PstI CTGCAG 1 cut(s) 162
SacI GAGCTC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 785
SatI GCNGC 6 cut(s) 113, 116, 213, 323, 456, 855
Sau3AI GATC 1 cut(s) 39
Sau96I GGNCC 3 cut(s) 165, 432, 614
SchI GAGTC 2 cut(s) 163, 798
ScrFI CCNGG 5 cut(s) 109, 201, 444, 905, 920
SduI GDGCHC 4 cut(s) 201, 208, 519, 706
SfaNI GCATC 3 cut(s) 265, 745, 841
SfcI CTRYAG 1 cut(s) 158
SinI GGWCC 3 cut(s) 165, 432, 614
Sse9I AATT 3 cut(s) 415, 581, 747
SsiI CCGC 9 cut(s) 81, 112, 116, 151, 212, 243, 361, 377, 546
SspI AATATT 1 cut(s) 561
SstI GAGCTC 1 cut(s) 208
StyD4I CCNGG 5 cut(s) 107, 199, 442, 903, 918
TaaI ACNGT 2 cut(s) 667, 727
TaiI ACGT 1 cut(s) 392
TaqI TCGA 5 cut(s) 288, 420, 569, 654, 798
TasI AATT 3 cut(s) 415, 581, 747
TauI GCSGC 3 cut(s) 115, 118, 215
TfiI GAWTC 2 cut(s) 251, 887
Tru1I TTAA 1 cut(s) 785
Tru9I TTAA 1 cut(s) 785
TscAI CASTG 6 cut(s) 99, 261, 307, 612, 732, 772
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 3 cut(s) 322, 455, 854
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 3 cut(s) 569, 641, 799
TspGWI ACGGA 2 cut(s) 91, 157
TspRI CASTG 6 cut(s) 99, 261, 307, 612, 732, 772
VneI GTGCAC 1 cut(s) 702
VpaK11BI GGWCC 3 cut(s) 165, 432, 614
XapI RAATTY 2 cut(s) 415, 581
XceI RCATGY 1 cut(s) 322
XcmI CCANNNNNNNNNTGG 2 cut(s) 91, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.