Prupe.7G076700_v2.0.a1

plastid-lipid-associated protein 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0004957
Physical Location & Seq
Reverse (-)
11332268 .. 11338091
5824 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G076700.3

Sequence Viewer

Length: 957 bp
ATGGTGTCCGTTCAGAGCCAGCTCTCTGCGATTGCTTCGATTCACTTCTGTTGTTCGTCGTCGTCTTCATTGTCCTCGTCCTTCTCTTCAACCACCACCACCACCACCACTTCACTGGTCCCTGTCGGAAAGTGGCCGCAGTATGGACGGAGAATCTCCGGAGACCGGAGACTTCGACTCCGGCGATCCCTGTGCCGAGCAATGGTTCAGCAGGCCGTTCCCGGAGCTCCTGCCGCGTATGCTAAGGAAATGGAGAGGCTTTCAGCTAAAGAATCTCTGCTTCTTGCCTTTAAGGATGCTGGGGGTTTTGAGGCTTTGGTCACTGGAAAGACAACAGACATGGAGCGGATTGATGTGAATGAGAGGATAACTAGTTTGGAGCGGGTCAATCCAACACCACGTCCTACAACGTCGCCTTTTTTGGAAGGTCGATGGAATTTCGAGTGGTTTGGATCTGCAAGCCCAGGTCTATTTGCTGCTAGATTTATATTTCAGAGGTTTCCTTCAACTTTGGCTAGTTTGTCAAAAATGGAGGTGGTCATCAAGGATGGGAATGCAGAGATTACAGCAAACTTGAAACTGTTGAACTCGATAGAAAGCAAATTTACTCTGTCAATCAAGTTATCTGTGGAGGGACCAGTTCGAATGAAAGAGGAATATGTTGAGGGAATTCTCGAGACACCAACAGTTATTGAAGAGACAATACCAGAACAGCTAAAAGGTGCATTTGGTCAGGCAGTGAGCACAGTGCAACAACTTCCTTTTCCTATTAGGGATGCCTTTTCCAGTGGGCTGAAAGTTCCTTTAACTGGAGCTTTTGAGAGACTCTTCATGATTTCGTATCTAGATACAGAGATACTTATAATAAGGGATGCAGCTGGAGTTCCTGAAGTACTTACAAGGTTGGATACAGCTTCGTCTCCCCTGGAAGAAACCGTCATGGAGTATGAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

319

Amino Acids

34.97

Weight (kDa)

5.76

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 863
AccBSI CCGCTC 2 cut(s) 346, 382
AccII CGCG 1 cut(s) 236
AccIII TCCGGA 1 cut(s) 158
AciI CCGC 4 cut(s) 137, 234, 346, 382
AclWI GGATC 2 cut(s) 180, 460
AcoI YGGCCR 1 cut(s) 134
AcsI RAATTY 3 cut(s) 436, 602, 669
AcuI CTGAAG 1 cut(s) 909
AfaI GTAC 1 cut(s) 894
AfiI CCNNNNNNNGG 4 cut(s) 143, 165, 202, 809
AgsI TTSAA 5 cut(s) 90, 507, 577, 586, 695
AhlI ACTAGT 1 cut(s) 371
AjiI CACGTC 1 cut(s) 401
AjnI CCWGG 2 cut(s) 463, 924
AluBI AGCT 8 cut(s) 22, 227, 266, 715, 815, 878, 914, 954
AluI AGCT 8 cut(s) 22, 227, 266, 715, 815, 878, 914, 954
Alw21I GWGCWC 2 cut(s) 229, 746
Alw26I GTCTC 6 cut(s) 156, 163, 671, 692, 817, 924
AlwI GGATC 2 cut(s) 180, 460
Ama87I CYCGRG 1 cut(s) 674
Aor13HI TCCGGA 1 cut(s) 158
AoxI GGCC 2 cut(s) 134, 213
ApeKI GCWGC 2 cut(s) 476, 875
ApoI RAATTY 3 cut(s) 436, 602, 669
AspS9I GGNCC 2 cut(s) 118, 635
AsuC2I CCSGG 1 cut(s) 222
AsuII TTCGAA 1 cut(s) 643
AvaI CYCGRG 1 cut(s) 674
AvaII GGWCC 2 cut(s) 118, 635
BanII GRGCYC 1 cut(s) 229
BarI GAAGNNNNNNTAC 2 cut(s) 687, 719
BbsI GAAGAC 1 cut(s) 57
Bbv12I GWGCWC 2 cut(s) 229, 746
BbvI GCAGC 2 cut(s) 463, 887
BccI CCATC 2 cut(s) 426, 542
BceAI ACGGC 1 cut(s) 200
BcgI CGANNNNNNTGC 2 cut(s) 174, 208
BciT130I CCWGG 2 cut(s) 465, 926
BciVI GTATCC 1 cut(s) 901
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 6 cut(s) 156, 163, 671, 692, 817, 924
BcuI ACTAGT 1 cut(s) 371
BfaI CTAG 4 cut(s) 372, 480, 516, 845
BfuI GTATCC 1 cut(s) 901
BisI GCNGC 4 cut(s) 137, 234, 477, 876
BlsI GCNGC 4 cut(s) 138, 235, 478, 877
BmcAI AGTACT 1 cut(s) 894
Bme1390I CCNGG 3 cut(s) 222, 465, 926
Bme18I GGWCC 2 cut(s) 118, 635
BmeT110I CYCGRG 1 cut(s) 674
BmgBI CACGTC 1 cut(s) 401
BmgT120I GGNCC 2 cut(s) 118, 635
BmiI GGNNCC 2 cut(s) 120, 636
BmrFI CCNGG 3 cut(s) 222, 465, 926
BmsI GCATC 3 cut(s) 286, 766, 862
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 2 cut(s) 831, 900
Bpu10I CCTNAGC 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 643
BpuMI CCSGG 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 463, 924
BsaWI WCCGGW 2 cut(s) 158, 165
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 4 cut(s) 143, 165, 202, 809
Bse1I ACTGG 5 cut(s) 120, 328, 638, 786, 814
Bse3DI GCAATG 1 cut(s) 207
BseAI TCCGGA 1 cut(s) 158
BseBI CCWGG 2 cut(s) 465, 926
BseDI CCNNGG 2 cut(s) 463, 924
BseGI GGATG 4 cut(s) 301, 553, 781, 877
BseLI CCNNNNNNNGG 4 cut(s) 143, 165, 202, 809
BseMI GCAATG 1 cut(s) 207
BseNI ACTGG 5 cut(s) 120, 328, 638, 786, 814
BseXI GCAGC 2 cut(s) 463, 887
BseYI CCCAGC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 2 cut(s) 136, 215
BsiHKAI GWGCWC 2 cut(s) 229, 746
BsiHKCI CYCGRG 1 cut(s) 674
BsiSI CCGG 4 cut(s) 159, 166, 181, 222
BslFI GGGAC 2 cut(s) 104, 648
BslI CCNNNNNNNGG 4 cut(s) 143, 165, 202, 809
BsmAI GTCTC 6 cut(s) 156, 163, 671, 692, 817, 924
BsmBI CGTCTC 1 cut(s) 924
BsmFI GGGAC 2 cut(s) 104, 648
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 2 cut(s) 136, 215
Bso31I GGTCTC 1 cut(s) 156
BsoBI CYCGRG 1 cut(s) 674
Bsp119I TTCGAA 1 cut(s) 643
Bsp1286I GDGCHC 2 cut(s) 229, 746
Bsp13I TCCGGA 1 cut(s) 158
Bsp143I GATC 2 cut(s) 185, 452
BspACI CCGC 4 cut(s) 137, 234, 346, 382
BspANI GGCC 2 cut(s) 136, 215
BspEI TCCGGA 1 cut(s) 158
BspFNI CGCG 1 cut(s) 236
BspHI TCATGA 1 cut(s) 831
BspLI GGNNCC 2 cut(s) 120, 636
BspPI GGATC 2 cut(s) 180, 460
BspT104I TTCGAA 1 cut(s) 643
BspTNI GGTCTC 1 cut(s) 156
BsrBI CCGCTC 2 cut(s) 346, 382
BsrDI GCAATG 1 cut(s) 207
BsrI ACTGG 5 cut(s) 120, 328, 638, 786, 814
BssECI CCNNGG 2 cut(s) 463, 924
BssMI GATC 2 cut(s) 185, 452
Bst2UI CCWGG 2 cut(s) 465, 926
Bst4CI ACNGT 4 cut(s) 582, 688, 748, 937
Bst6I CTCTTC 3 cut(s) 91, 690, 833
BstBI TTCGAA 1 cut(s) 643
BstC8I GCNNGC 3 cut(s) 20, 213, 460
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 4 cut(s) 301, 553, 781, 877
BstFNI CGCG 1 cut(s) 236
BstKTI GATC 2 cut(s) 188, 455
BstMAI GTCTC 6 cut(s) 156, 163, 671, 692, 817, 924
BstMBI GATC 2 cut(s) 185, 452
BstMWI GCNNNNNNNGC 2 cut(s) 233, 239
BstNI CCWGG 2 cut(s) 465, 926
BstSCI CCNGG 3 cut(s) 220, 463, 924
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 2 cut(s) 463, 887
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 452
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 1 cut(s) 452
BsuI GTATCC 1 cut(s) 901
BsuRI GGCC 2 cut(s) 136, 215
BtrI CACGTC 1 cut(s) 401
BtsCI GGATG 4 cut(s) 301, 553, 781, 877
BtsI GCAGTG 1 cut(s) 744
BtsIMutI CAGTG 5 cut(s) 113, 321, 744, 753, 793
Cac8I GCNNGC 3 cut(s) 20, 213, 460
CciI TCATGA 1 cut(s) 831
Cfr13I GGNCC 2 cut(s) 118, 635
Csp6I GTAC 1 cut(s) 893
CviAII CATG 3 cut(s) 340, 832, 940
CviQI GTAC 1 cut(s) 893
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 187, 454
DpnII GATC 2 cut(s) 185, 452
EaeI YGGCCR 1 cut(s) 134
Eam1104I CTCTTC 3 cut(s) 91, 690, 833
EarI CTCTTC 3 cut(s) 91, 690, 833
Ecl136II GAGCTC 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 229
Eco31I GGTCTC 1 cut(s) 156
Eco47I GGWCC 2 cut(s) 118, 635
Eco53kI GAGCTC 1 cut(s) 227
Eco57I CTGAAG 1 cut(s) 909
Eco88I CYCGRG 1 cut(s) 674
EcoICRI GAGCTC 1 cut(s) 227
EcoRI GAATTC 1 cut(s) 669
EcoRII CCWGG 2 cut(s) 463, 924
EcoT38I GRGCYC 1 cut(s) 229
Esp3I CGTCTC 1 cut(s) 924
FaeI CATG 3 cut(s) 343, 835, 943
FaiI YATR 9 cut(s) 144, 240, 341, 488, 660, 833, 863, 941, 948
FaqI GGGAC 2 cut(s) 104, 648
FatI CATG 3 cut(s) 339, 831, 939
FauI CCCGC 1 cut(s) 375
Fnu4HI GCNGC 4 cut(s) 137, 234, 477, 876
FokI GGATG 4 cut(s) 308, 560, 788, 884
FriOI GRGCYC 1 cut(s) 229
Fsp4HI GCNGC 4 cut(s) 137, 234, 477, 876
FspBI CTAG 4 cut(s) 372, 480, 516, 845
GluI GCNGC 4 cut(s) 137, 234, 477, 876
GsaI CCCAGC 1 cut(s) 303
GsuI CTGGAG 2 cut(s) 831, 900
HaeIII GGCC 2 cut(s) 136, 215
HapII CCGG 4 cut(s) 159, 166, 181, 222
Hin1II CATG 3 cut(s) 343, 835, 943
HinfI GANTC 5 cut(s) 40, 153, 177, 272, 825
HpaII CCGG 4 cut(s) 159, 166, 181, 222
Hpy188I TCNGA 3 cut(s) 15, 128, 495
Hpy188III TCNNGA 6 cut(s) 159, 674, 676, 832, 845, 887
Hpy99I CGWCG 3 cut(s) 61, 64, 415
HpyAV CCTTC 3 cut(s) 91, 419, 513
HpyCH4III ACNGT 4 cut(s) 582, 688, 748, 937
HpyCH4IV ACGT 2 cut(s) 400, 410
HpyCH4V TGCA 5 cut(s) 458, 557, 725, 751, 875
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 239
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 2 cut(s) 400, 410
Hsp92II CATG 3 cut(s) 343, 835, 943
Kpn2I TCCGGA 1 cut(s) 158
Kzo9I GATC 2 cut(s) 185, 452
LmnI GCTCC 5 cut(s) 224, 232, 343, 379, 812
Lsp1109I GCAGC 2 cut(s) 463, 887
LweI GCATC 3 cut(s) 286, 766, 862
MaeI CTAG 4 cut(s) 372, 480, 516, 845
MaeII ACGT 2 cut(s) 400, 410
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 187, 454
MbiI CCGCTC 2 cut(s) 346, 382
MboI GATC 2 cut(s) 185, 452
MboII GAAGA 5 cut(s) 57, 78, 707, 820, 941
MflI RGATCY 1 cut(s) 452
MhlI GDGCHC 2 cut(s) 229, 746
MluCI AATT 3 cut(s) 436, 602, 669
MlyI GAGTC 2 cut(s) 171, 819
MmeI TCCRAC 3 cut(s) 106, 416, 885
MnlI CCTC 9 cut(s) 85, 249, 304, 357, 489, 526, 625, 646, 658
MroI TCCGGA 1 cut(s) 158
MseI TTAA 2 cut(s) 291, 806
MspA1I CMGCKG 1 cut(s) 878
MspI CCGG 4 cut(s) 159, 166, 181, 222
MspR9I CCNGG 3 cut(s) 222, 465, 926
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 2 cut(s) 465, 926
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 233, 239
NciI CCSGG 1 cut(s) 222
NdeII GATC 2 cut(s) 185, 452
NlaIII CATG 3 cut(s) 343, 835, 943
NlaIV GGNNCC 2 cut(s) 120, 636
NmeAIII GCCGAG 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 319
NspV TTCGAA 1 cut(s) 643
PaeR7I CTCGAG 1 cut(s) 674
PagI TCATGA 1 cut(s) 831
PcsI WCGNNNNNNNCGW 1 cut(s) 181
PctI GAATGC 1 cut(s) 559
PfeI GAWTC 3 cut(s) 40, 153, 272
PfoI TCCNGGA 1 cut(s) 220
PkrI GCNGC 4 cut(s) 138, 235, 478, 877
PleI GAGTC 2 cut(s) 171, 819
PpsI GAGTC 2 cut(s) 171, 819
PsiI TTATAA 1 cut(s) 863
Psp124BI GAGCTC 1 cut(s) 229
Psp6I CCWGG 2 cut(s) 463, 924
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 2 cut(s) 463, 924
PspN4I GGNNCC 2 cut(s) 120, 636
PspPI GGNCC 2 cut(s) 118, 635
PsuI RGATCY 1 cut(s) 452
PvuII CAGCTG 1 cut(s) 878
RsaI GTAC 1 cut(s) 894
RsaNI GTAC 1 cut(s) 893
SacI GAGCTC 1 cut(s) 229
SaqAI TTAA 2 cut(s) 291, 806
SatI GCNGC 4 cut(s) 137, 234, 477, 876
Sau3AI GATC 2 cut(s) 185, 452
Sau96I GGNCC 2 cut(s) 118, 635
ScaI AGTACT 1 cut(s) 894
SchI GAGTC 2 cut(s) 171, 819
ScrFI CCNGG 3 cut(s) 222, 465, 926
SduI GDGCHC 2 cut(s) 229, 746
SfaNI GCATC 3 cut(s) 286, 766, 862
Sfr274I CTCGAG 1 cut(s) 674
SfuI TTCGAA 1 cut(s) 643
SinI GGWCC 2 cut(s) 118, 635
SlaI CTCGAG 1 cut(s) 674
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
SpeI ACTAGT 1 cut(s) 371
Sse9I AATT 3 cut(s) 436, 602, 669
SsiI CCGC 4 cut(s) 137, 234, 346, 382
SspMI CTAG 4 cut(s) 372, 480, 516, 845
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 3 cut(s) 220, 463, 924
TaaI ACNGT 4 cut(s) 582, 688, 748, 937
TaiI ACGT 2 cut(s) 403, 413
TaqI TCGA 7 cut(s) 38, 175, 430, 441, 590, 643, 675
TasI AATT 3 cut(s) 436, 602, 669
TatI WGTACW 1 cut(s) 892
TauI GCSGC 2 cut(s) 139, 236
TfiI GAWTC 3 cut(s) 40, 153, 272
Tru1I TTAA 2 cut(s) 291, 806
Tru9I TTAA 2 cut(s) 291, 806
TscAI CASTG 5 cut(s) 120, 328, 744, 753, 793
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 2 cut(s) 476, 875
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 3 cut(s) 57, 662, 820
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 5 cut(s) 120, 328, 744, 753, 793
VpaK11BI GGWCC 2 cut(s) 118, 635
XapI RAATTY 3 cut(s) 436, 602, 669
XbaI TCTAGA 1 cut(s) 844
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XhoI CTCGAG 1 cut(s) 674
XspI CTAG 4 cut(s) 372, 480, 516, 845
ZrmI AGTACT 1 cut(s) 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.