RchiOBHm_Chr3g0479711

plastid-lipid-associated protein 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0004957
Physical Location & Seq
Forward (+)
25470880 .. 25477435
6556 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44478

Sequence Viewer

Length: 945 bp
ATGGCGACCTTACAGGGCCAGCTCTCTGCGATTTCCGCCATCGGCTCCTGTTGCTCCTCCTCTTCATCGTCCTCCTCCTCCCTCTCTTCCACCACCACCACTTCACTGGTTTCCGTCGCCACCTGGCCGCAGTCTGCCCGGAAACTCCCCCGAGACCGGAGCCGGAGTCTCCAGAGGTCCGTTGTCCGAGCAATGGTTCAGACGGTCCCCGGAGCTCCGGCCGCCTACGCTAAGGAAATGGAGAGGCTCTCCGCTAAAGAATCACTGCTTCTCGCCTTCAAGGATGCTGGGGGTTTTGAGGCATTAGTCACTGGAAAGACGACAGACATGCAGCGGATTGATGTCAATGAGAGGATTACTGCTTTGGAGCGGGTCAATCCAACACCCCGCCCTACAACGTCGCCCTTTTTGGAAGGACGATGGAATTTCGAGTGGTTTGGGTCTGGAAGCCCAGGTCTATTTGCTGCTAGATTTCTATTAGAGAGATTTCCTTCAACAGTGGCCAGTTTGTCAAAAATGGAGGTGCTCATCAAGGAAGGGAATGCAAAGATTACAGTACACATGAAAATATTGAACTCGATAGAAAGCAAATTTTCTCTGTCAACCAAGTTGTCTGTGGAGGGACCAGTTAGAATGAAAGAGGAATATGTTGAGGGGATTCTTGACACACCAACAGTTATTGAAGAAACAATACCTGAACAGCTAAAAGGTGCACTTGGTCAGGCAGTCAACACAGTGCAACAGCTTCCCGTTCCAATTAGGGATGCCTTCGCCAGTGGGTTGAGAGTTCCTTTAACTGGAGCTTTCGAGAGACTCTTCATGATTTCCTATCTTGATATGGAGATACTGATCATAAGAGATGCTGCTGGAGTTCCTGAAATACTTACAAGGTTAGATTCACCCTCATCTCCCCTGGCAGAAACCATCACGGAGTATGAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

314

Amino Acids

34.11

Weight (kDa)

6.08

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 107 - 291 7.7e-11 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 370
AciI CCGC 7 cut(s) 36, 128, 222, 252, 334, 370, 388
AcoI YGGCCR 3 cut(s) 125, 219, 501
AcsI RAATTY 2 cut(s) 424, 590
AfaI GTAC 1 cut(s) 558
AfiI CCNNNNNNNGG 3 cut(s) 156, 193, 797
AgsI TTSAA 4 cut(s) 280, 495, 574, 683
AjnI CCWGG 3 cut(s) 122, 451, 912
AluBI AGCT 6 cut(s) 22, 215, 703, 745, 803, 942
AluI AGCT 6 cut(s) 22, 215, 703, 745, 803, 942
Alw21I GWGCWC 3 cut(s) 217, 528, 715
Alw26I GTCTC 3 cut(s) 147, 173, 805
Alw44I GTGCAC 1 cut(s) 711
Ama87I CYCGRG 1 cut(s) 150
AoxI GGCC 4 cut(s) 16, 125, 219, 501
ApaLI GTGCAC 1 cut(s) 711
ApeKI GCWGC 3 cut(s) 331, 464, 863
ApoI RAATTY 2 cut(s) 424, 590
AspS9I GGNCC 4 cut(s) 16, 177, 205, 623
AsuC2I CCSGG 2 cut(s) 139, 210
AsuHPI GGTGA 1 cut(s) 891
AvaI CYCGRG 1 cut(s) 150
AvaII GGWCC 3 cut(s) 177, 205, 623
BaeGI GKGCMC 1 cut(s) 715
BalI TGGCCA 1 cut(s) 503
BanII GRGCYC 1 cut(s) 217
BarI GAAGNNNNNNTAC 2 cut(s) 675, 707
Bbv12I GWGCWC 3 cut(s) 217, 528, 715
BbvI GCAGC 3 cut(s) 343, 451, 850
BccI CCATC 3 cut(s) 47, 414, 932
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciT130I CCWGG 3 cut(s) 124, 453, 914
BclI TGATCA 1 cut(s) 849
BcnI CCSGG 2 cut(s) 139, 210
BcoDI GTCTC 3 cut(s) 147, 173, 805
BfaI CTAG 1 cut(s) 468
BisI GCNGC 5 cut(s) 128, 222, 332, 465, 864
BlsI GCNGC 5 cut(s) 129, 223, 333, 466, 865
Bme1390I CCNGG 5 cut(s) 124, 139, 210, 453, 914
Bme18I GGWCC 3 cut(s) 177, 205, 623
BmeT110I CYCGRG 1 cut(s) 150
BmgT120I GGNCC 4 cut(s) 16, 177, 205, 623
BmiI GGNNCC 4 cut(s) 46, 161, 207, 624
BmrFI CCNGG 5 cut(s) 124, 139, 210, 453, 914
BmsI GCATC 3 cut(s) 274, 754, 850
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 3 cut(s) 155, 819, 888
Bpu10I CCTNAGC 1 cut(s) 231
BpuMI CCSGG 2 cut(s) 139, 210
BsaBI GATNNNNATC 1 cut(s) 848
BsaI GGTCTC 1 cut(s) 147
BsaJI CCNNGG 3 cut(s) 208, 451, 912
BsaWI WCCGGW 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bsc4I CCNNNNNNNGG 3 cut(s) 156, 193, 797
Bse1I ACTGG 6 cut(s) 111, 316, 504, 626, 774, 802
Bse3DI GCAATG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 848
BseBI CCWGG 3 cut(s) 124, 453, 914
BseDI CCNNGG 3 cut(s) 208, 451, 912
BseGI GGATG 2 cut(s) 289, 769
BseJI GATNNNNATC 1 cut(s) 848
BseLI CCNNNNNNNGG 3 cut(s) 156, 193, 797
BseMI GCAATG 1 cut(s) 198
BseNI ACTGG 6 cut(s) 111, 316, 504, 626, 774, 802
BseRI GAGGAG 4 cut(s) 46, 49, 64, 67
BseSI GKGCMC 1 cut(s) 715
BseX3I CGGCCG 1 cut(s) 219
BseXI GCAGC 3 cut(s) 343, 451, 850
BseYI CCCAGC 1 cut(s) 287
Bsh1285I CGRYCG 1 cut(s) 222
BshFI GGCC 4 cut(s) 18, 127, 221, 503
BsiEI CGRYCG 1 cut(s) 222
BsiHKAI GWGCWC 3 cut(s) 217, 528, 715
BsiHKCI CYCGRG 1 cut(s) 150
BsiSI CCGG 5 cut(s) 139, 157, 163, 210, 218
BslFI GGGAC 2 cut(s) 191, 636
BslI CCNNNNNNNGG 3 cut(s) 156, 193, 797
BsmAI GTCTC 3 cut(s) 147, 173, 805
BsmFI GGGAC 2 cut(s) 191, 636
BsmI GAATGC 1 cut(s) 547
BsnI GGCC 4 cut(s) 18, 127, 221, 503
Bso31I GGTCTC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 150
Bsp1286I GDGCHC 3 cut(s) 217, 528, 715
Bsp143I GATC 1 cut(s) 849
BspACI CCGC 7 cut(s) 36, 128, 222, 252, 334, 370, 388
BspANI GGCC 4 cut(s) 18, 127, 221, 503
BspHI TCATGA 1 cut(s) 819
BspLI GGNNCC 4 cut(s) 46, 161, 207, 624
BspTNI GGTCTC 1 cut(s) 147
BsrBI CCGCTC 1 cut(s) 370
BsrDI GCAATG 1 cut(s) 198
BsrI ACTGG 6 cut(s) 111, 316, 504, 626, 774, 802
BssECI CCNNGG 3 cut(s) 208, 451, 912
BssMI GATC 1 cut(s) 849
Bst2UI CCWGG 3 cut(s) 124, 453, 914
Bst4CI ACNGT 5 cut(s) 205, 499, 556, 676, 736
Bst6I CTCTTC 3 cut(s) 67, 91, 821
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 2 cut(s) 289, 769
BstKTI GATC 1 cut(s) 852
BstMAI GTCTC 3 cut(s) 147, 173, 805
BstMBI GATC 1 cut(s) 849
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 4 cut(s) 35, 51, 221, 227
BstNI CCWGG 3 cut(s) 124, 453, 914
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 5 cut(s) 122, 137, 208, 451, 912
BstSLI GKGCMC 1 cut(s) 715
BstV1I GCAGC 3 cut(s) 343, 451, 850
BstXI CCANNNNNNTGG 1 cut(s) 106
BstZI CGGCCG 1 cut(s) 219
BsuRI GGCC 4 cut(s) 18, 127, 221, 503
BtsCI GGATG 2 cut(s) 289, 769
BtsI GCAGTG 1 cut(s) 263
BtsIMutI CAGTG 6 cut(s) 104, 263, 309, 504, 741, 781
Cac8I GCNNGC 1 cut(s) 20
CciI TCATGA 1 cut(s) 819
Cfr13I GGNCC 4 cut(s) 16, 177, 205, 623
Csp6I GTAC 1 cut(s) 557
CviAII CATG 3 cut(s) 328, 562, 820
CviQI GTAC 1 cut(s) 557
DdeI CTNAG 1 cut(s) 231
DpnI GATC 1 cut(s) 851
DpnII GATC 1 cut(s) 849
EaeI YGGCCR 3 cut(s) 125, 219, 501
EagI CGGCCG 1 cut(s) 219
Eam1104I CTCTTC 3 cut(s) 67, 91, 821
EarI CTCTTC 3 cut(s) 67, 91, 821
EciI GGCGGA 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 215
EclXI CGGCCG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 147
Eco47I GGWCC 3 cut(s) 177, 205, 623
Eco52I CGGCCG 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 215
EcoRII CCWGG 3 cut(s) 122, 451, 912
EcoT38I GRGCYC 1 cut(s) 217
FaeI CATG 3 cut(s) 331, 565, 823
FaiI YATR 7 cut(s) 329, 563, 648, 821, 839, 854, 936
FalI AAGNNNNNCTT 2 cut(s) 699, 731
FaqI GGGAC 2 cut(s) 191, 636
FatI CATG 3 cut(s) 327, 561, 819
FauI CCCGC 2 cut(s) 363, 395
FbaI TGATCA 1 cut(s) 849
Fnu4HI GCNGC 5 cut(s) 128, 222, 332, 465, 864
FokI GGATG 2 cut(s) 296, 776
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 5 cut(s) 128, 222, 332, 465, 864
FspBI CTAG 1 cut(s) 468
GluI GCNGC 5 cut(s) 128, 222, 332, 465, 864
GsaI CCCAGC 1 cut(s) 291
GsuI CTGGAG 3 cut(s) 155, 819, 888
HaeIII GGCC 4 cut(s) 18, 127, 221, 503
HapII CCGG 5 cut(s) 139, 157, 163, 210, 218
Hin1II CATG 3 cut(s) 331, 565, 823
HincII GTYRAC 2 cut(s) 603, 730
HindII GTYRAC 2 cut(s) 603, 730
HinfI GANTC 5 cut(s) 166, 260, 658, 813, 896
HpaII CCGG 5 cut(s) 139, 157, 163, 210, 218
HphI GGTGA 1 cut(s) 891
Hpy166II GTNNAC 4 cut(s) 559, 603, 713, 730
Hpy188I TCNGA 2 cut(s) 188, 201
Hpy188III TCNNGA 7 cut(s) 172, 444, 662, 808, 820, 833, 875
Hpy8I GTNNAC 4 cut(s) 559, 603, 713, 730
Hpy99I CGWCG 2 cut(s) 119, 403
HpyAV CCTTC 5 cut(s) 286, 407, 501, 530, 778
HpyCH4III ACNGT 5 cut(s) 205, 499, 556, 676, 736
HpyCH4IV ACGT 1 cut(s) 398
HpyCH4V TGCA 4 cut(s) 331, 545, 713, 739
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 51, 221, 227
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 398
Hsp92II CATG 3 cut(s) 331, 565, 823
Ksp22I TGATCA 1 cut(s) 849
Kzo9I GATC 1 cut(s) 849
LmnI GCTCC 7 cut(s) 50, 59, 159, 212, 220, 367, 800
Lsp1109I GCAGC 3 cut(s) 343, 451, 850
LweI GCATC 3 cut(s) 274, 754, 850
MaeI CTAG 1 cut(s) 468
MaeII ACGT 1 cut(s) 398
MaeIII GTNAC 1 cut(s) 307
MalI GATC 1 cut(s) 851
MbiI CCGCTC 1 cut(s) 370
MboI GATC 1 cut(s) 849
MboII GAAGA 4 cut(s) 54, 78, 695, 808
MhlI GDGCHC 3 cut(s) 217, 528, 715
MlsI TGGCCA 1 cut(s) 503
MluCI AATT 3 cut(s) 424, 590, 756
MluNI TGGCCA 1 cut(s) 503
MlyI GAGTC 2 cut(s) 175, 807
MmeI TCCRAC 1 cut(s) 404
Mox20I TGGCCA 1 cut(s) 503
MscI TGGCCA 1 cut(s) 503
MseI TTAA 1 cut(s) 794
Msp20I TGGCCA 1 cut(s) 503
MspA1I CMGCKG 1 cut(s) 334
MspI CCGG 5 cut(s) 139, 157, 163, 210, 218
MspR9I CCNGG 5 cut(s) 124, 139, 210, 453, 914
Mva1269I GAATGC 1 cut(s) 547
MvaI CCWGG 3 cut(s) 124, 453, 914
MwoI GCNNNNNNNGC 4 cut(s) 35, 51, 221, 227
NciI CCSGG 2 cut(s) 139, 210
NdeII GATC 1 cut(s) 849
NlaIII CATG 3 cut(s) 331, 565, 823
NlaIV GGNNCC 4 cut(s) 46, 161, 207, 624
NmuCI GTSAC 1 cut(s) 307
NspI RCATGY 1 cut(s) 331
PagI TCATGA 1 cut(s) 819
PctI GAATGC 1 cut(s) 547
PfeI GAWTC 3 cut(s) 260, 658, 896
PkrI GCNGC 5 cut(s) 129, 223, 333, 466, 865
PleI GAGTC 2 cut(s) 174, 807
PpsI GAGTC 2 cut(s) 174, 807
Psp124BI GAGCTC 1 cut(s) 217
Psp6I CCWGG 3 cut(s) 122, 451, 912
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 3 cut(s) 122, 451, 912
PspN4I GGNNCC 4 cut(s) 46, 161, 207, 624
PspPI GGNCC 4 cut(s) 16, 177, 205, 623
RsaI GTAC 1 cut(s) 558
RsaNI GTAC 1 cut(s) 557
SacI GAGCTC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 794
SatI GCNGC 5 cut(s) 128, 222, 332, 465, 864
Sau3AI GATC 1 cut(s) 849
Sau96I GGNCC 4 cut(s) 16, 177, 205, 623
SchI GAGTC 2 cut(s) 175, 807
ScrFI CCNGG 5 cut(s) 124, 139, 210, 453, 914
SduI GDGCHC 3 cut(s) 217, 528, 715
SfaNI GCATC 3 cut(s) 274, 754, 850
SinI GGWCC 3 cut(s) 177, 205, 623
Sse9I AATT 3 cut(s) 424, 590, 756
SsiI CCGC 7 cut(s) 36, 128, 222, 252, 334, 370, 388
SspI AATATT 1 cut(s) 570
SspMI CTAG 1 cut(s) 468
SstI GAGCTC 1 cut(s) 217
StyD4I CCNGG 5 cut(s) 122, 137, 208, 451, 912
TaaI ACNGT 5 cut(s) 205, 499, 556, 676, 736
TaiI ACGT 1 cut(s) 401
TaqI TCGA 3 cut(s) 429, 578, 807
TasI AATT 3 cut(s) 424, 590, 756
TatI WGTACW 1 cut(s) 556
TauI GCSGC 2 cut(s) 130, 224
TfiI GAWTC 3 cut(s) 260, 658, 896
Tru1I TTAA 1 cut(s) 794
Tru9I TTAA 1 cut(s) 794
TscAI CASTG 6 cut(s) 111, 270, 316, 504, 741, 781
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 3 cut(s) 331, 464, 863
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 4 cut(s) 54, 578, 650, 808
TspGWI ACGGA 3 cut(s) 103, 169, 944
TspRI CASTG 6 cut(s) 111, 270, 316, 504, 741, 781
VneI GTGCAC 1 cut(s) 711
VpaK11BI GGWCC 3 cut(s) 177, 205, 623
XapI RAATTY 2 cut(s) 424, 590
XceI RCATGY 1 cut(s) 331
XcmI CCANNNNNNNNNTGG 2 cut(s) 103, 613
XspI CTAG 1 cut(s) 468
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.