Rorug03G0177800

plastid-lipid-associated protein 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004957
Physical Location & Seq
Reverse (-)
15114899 .. 15115787
889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0177800.1

Sequence Viewer

Length: 321 bp
ATGAGTTGCAGAAATATGTTGAAAGTGAGTGTCTTAATGTTGCTTGCCTTGGCTTTGGCAGCAACTAGTGCTCATGCTCGCTTACATCTATTTGGTCAGTTGCTTACCTCCAAGAACCAACCAGACCCTAATTCTGAAGAAGTGCAGGTGCAGCTGAAAGGAAAATCAGATGTCGATGAGTCCCGGAAGCGCATTGCATATCTAGAATGCATCAATAACTGTGATGACTGTGTAGCTTGCACACGTATGTGGCCTCCTGAAGTCAACACTTGCCTTTGCATTAACAACAGCAAGTCCAAGAAGCCAAATACTGTAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

106

Amino Acids

11.76

Weight (kDa)

8.52

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 136
Acc36I ACCTGC 1 cut(s) 136
AcuI CTGAAG 2 cut(s) 156, 279
AflIII ACRYGT 1 cut(s) 242
AgsI TTSAA 1 cut(s) 22
AhlI ACTAGT 1 cut(s) 65
AleI CACNNNNGTG 1 cut(s) 247
AluBI AGCT 2 cut(s) 154, 236
AluI AGCT 2 cut(s) 154, 236
Alw21I GWGCWC 1 cut(s) 73
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 59, 151
AspLEI GCGC 1 cut(s) 192
AsuC2I CCSGG 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 2 cut(s) 71, 163
BcnI CCSGG 1 cut(s) 184
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 2 cut(s) 66, 203
BfmI CTRYAG 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 136
BisI GCNGC 2 cut(s) 60, 152
BlsI GCNGC 2 cut(s) 61, 153
Bme1390I CCNGG 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 184
BmsI GCATC 1 cut(s) 219
BpuMI CCSGG 1 cut(s) 184
BsaAI YACGTR 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 48
BseMI GCAATG 1 cut(s) 192
BseXI GCAGC 2 cut(s) 71, 163
BsgI GTGCAG 2 cut(s) 164, 170
BshFI GGCC 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 73
BsiSI CCGG 1 cut(s) 184
BslFI GGGAC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 166
BsmI GAATGC 1 cut(s) 212
BsnI GGCC 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 73
BspANI GGCC 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 136
BsrDI GCAATG 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 48
Bst4CI ACNGT 3 cut(s) 221, 230, 313
BstAPI GCANNNNNTGC 1 cut(s) 68
BstBAI YACGTR 1 cut(s) 245
BstC8I GCNNGC 3 cut(s) 45, 79, 238
BstHHI GCGC 1 cut(s) 192
BstMWI GCNNNNNNNGC 3 cut(s) 59, 68, 151
BstSCI CCNGG 1 cut(s) 182
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 71, 163
BsuRI GGCC 1 cut(s) 253
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 3 cut(s) 45, 79, 238
CfoI GCGC 1 cut(s) 192
CviAII CATG 1 cut(s) 74
CviJI RGCY 5 cut(s) 53, 154, 236, 253, 304
CviKI_1 RGCY 5 cut(s) 53, 154, 236, 253, 304
Eco130I CCWWGG 1 cut(s) 48
Eco57I CTGAAG 2 cut(s) 156, 279
EcoT14I CCWWGG 1 cut(s) 48
EcoT22I ATGCAT 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 1 cut(s) 77
FaiI YATR 4 cut(s) 17, 75, 199, 248
FaqI GGGAC 1 cut(s) 166
FatI CATG 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 60, 152
Fsp4HI GCNGC 2 cut(s) 60, 152
FspBI CTAG 2 cut(s) 66, 203
GlaI GCGC 1 cut(s) 191
GluI GCNGC 2 cut(s) 60, 152
HaeIII GGCC 1 cut(s) 253
HapII CCGG 1 cut(s) 184
HhaI GCGC 1 cut(s) 192
Hin1II CATG 1 cut(s) 77
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 1 cut(s) 179
HpaII CCGG 1 cut(s) 184
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 2 cut(s) 136, 169
Hpy188III TCNNGA 2 cut(s) 203, 257
Hpy8I GTNNAC 1 cut(s) 265
HpyCH4III ACNGT 3 cut(s) 221, 230, 313
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 7 cut(s) 9, 145, 151, 197, 210, 240, 279
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 68, 151
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 1 cut(s) 77
HspAI GCGC 1 cut(s) 190
LpnPI CCDG 4 cut(s) 131, 135, 197, 270
Lsp1109I GCAGC 2 cut(s) 71, 163
LweI GCATC 1 cut(s) 219
MaeI CTAG 2 cut(s) 66, 203
MaeII ACGT 1 cut(s) 244
MboII GAAGA 1 cut(s) 149
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 1 cut(s) 130
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 2 cut(s) 118, 264
Mph1103I ATGCAT 1 cut(s) 212
MseI TTAA 2 cut(s) 35, 282
MslI CAYNNNNRTG 2 cut(s) 245, 247
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 1 cut(s) 184
MspR9I CCNGG 1 cut(s) 184
Mva1269I GAATGC 1 cut(s) 212
MwoI GCNNNNNNNGC 3 cut(s) 59, 68, 151
NciI CCSGG 1 cut(s) 184
NlaIII CATG 1 cut(s) 77
NsiI ATGCAT 1 cut(s) 212
OliI CACNNNNGTG 1 cut(s) 247
PaqCI CACCTGC 1 cut(s) 136
PctI GAATGC 1 cut(s) 212
PfoI TCCNGGA 1 cut(s) 182
PkrI GCNGC 2 cut(s) 61, 153
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
Ppu21I YACGTR 1 cut(s) 245
PvuII CAGCTG 1 cut(s) 154
RseI CAYNNNNRTG 2 cut(s) 245, 247
SaqAI TTAA 2 cut(s) 35, 282
SatI GCNGC 2 cut(s) 60, 152
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 184
SduI GDGCHC 1 cut(s) 73
SetI ASST 5 cut(s) 110, 150, 156, 238, 247
SfaNI GCATC 1 cut(s) 219
SfcI CTRYAG 1 cut(s) 312
SmiMI CAYNNNNRTG 2 cut(s) 245, 247
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 1 cut(s) 130
SspMI CTAG 2 cut(s) 66, 203
StyD4I CCNGG 1 cut(s) 182
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 3 cut(s) 221, 230, 313
TaiI ACGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 174
TasI AATT 1 cut(s) 130
Tru1I TTAA 2 cut(s) 35, 282
Tru9I TTAA 2 cut(s) 35, 282
TseI GCWGC 2 cut(s) 59, 151
XbaI TCTAGA 1 cut(s) 202
XspI CTAG 2 cut(s) 66, 203
Zsp2I ATGCAT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.