Rh3BG261500

plastid-lipid-associated protein 13

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0004957
Physical Location & Seq
Forward (+)
25320165 .. 25327115
6951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG261500.1

Sequence Viewer

Length: 975 bp
ATGGCGACCTTACAGGCCCACCTCTCTGCTATTTCTGCCATCGGCTCCTCCTCTTCATCGTCCTCCTCCCTCTCTTCCACCACCACCACTTCACTGGTTTCCGTCGCCACCTGGCCGCAGTCTGCCCGGAAACTGCCCGGAGACCGGAGCCGGAGTCTCCAGAGGTCCGTTGTCCGAGCAATGGTTCAGACCGTGCCGGGGGCTCCGGCAGCCTATGCTAAGGAAATGGAGAGGCTCTCCGCTAAAGAATCACTGCTTCTCGCCTTCAAGGATGCTGGGGGTTTTGAGGCATTAGTCACTGGAAAGACGACAGACATGCAGCGGATTGATGTCAATGAGAGGATTACTGCTTTGGAGCGGGTCAATCCAACACCCCGCCCTACAACGTCGCCCTTTTTGGAAGGACGATGGAATTTCGAGTGGTTTGGGTCCGGAAGCCCAGGTCTATTTGCTGCTAGATTTCTATTAGAGAGATTTCCTTCAACAGTGGCCAGTTTGTCAAAAATGGAGGTGCTCATCAAGGAAGGGAATGCAAAGATTACAGCAAACATGAAAATATTGAACTCGATAGAAAGCAAATTTTCTCTGTCAACCAAGTTGTCTGTGGAGGGACCAGTTAGAATGAAAGAGGAATATGTTGAGGGGATTCTTGACACACCAACAGTTATTGAAGAAACAATACCAGAGCAGCTAAAAGGTGCACTTGGTCAGGCAGTCAACACAGTGCAACAGCTTCCTGTTCCAATTAGGGATGCCTTCGCCAATGGGTTGAGAGTTCCTTTAACTGGAGCTTTCGAGAGACTCTTCATGATTTCCTATCTTGATATGGAGATAATGATCATAAGAGATGCTGCTGGAGTTCCTGAAATACTTACAAGGTTAGATTCACCCTCATCTCCCCTGGCAGAAACCATCACGGATGTTCAAAAACTAATATTGGAAGTTTCTCAACAGAAGCTGCTAAATTTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAP_fibrillin

Protein Analysis

324

Amino Acids

35.23

Weight (kDa)

6.1

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 103 - 287 3.6e-11 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 358
AccIII TCCGGA 1 cut(s) 431
AciI CCGC 5 cut(s) 116, 240, 322, 358, 376
AcoI YGGCCR 2 cut(s) 113, 489
AcsI RAATTY 3 cut(s) 412, 578, 964
AfiI CCNNNNNNNGG 4 cut(s) 144, 181, 198, 785
AgsI TTSAA 5 cut(s) 268, 483, 562, 671, 926
AjnI CCWGG 3 cut(s) 110, 439, 900
AluBI AGCT 4 cut(s) 691, 733, 791, 958
AluI AGCT 4 cut(s) 691, 733, 791, 958
Alw21I GWGCWC 2 cut(s) 516, 703
Alw26I GTCTC 3 cut(s) 135, 161, 793
Alw44I GTGCAC 1 cut(s) 699
AlwNI CAGNNNCTG 1 cut(s) 958
Aor13HI TCCGGA 1 cut(s) 431
AoxI GGCC 3 cut(s) 15, 113, 489
ApaLI GTGCAC 1 cut(s) 699
ApeKI GCWGC 6 cut(s) 209, 319, 452, 688, 851, 958
ApoI RAATTY 3 cut(s) 412, 578, 964
AspS9I GGNCC 4 cut(s) 16, 165, 429, 611
AsuC2I CCSGG 3 cut(s) 127, 138, 198
AsuHPI GGTGA 1 cut(s) 879
AvaII GGWCC 3 cut(s) 165, 429, 611
BaeGI GKGCMC 1 cut(s) 703
BalI TGGCCA 1 cut(s) 491
BanII GRGCYC 1 cut(s) 205
BarI GAAGNNNNNNTAC 2 cut(s) 663, 695
Bbv12I GWGCWC 2 cut(s) 516, 703
BbvI GCAGC 6 cut(s) 221, 331, 439, 700, 838, 945
BccI CCATC 3 cut(s) 47, 402, 920
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BciT130I CCWGG 3 cut(s) 112, 441, 902
BclI TGATCA 1 cut(s) 837
BcnI CCSGG 3 cut(s) 127, 138, 198
BcoDI GTCTC 3 cut(s) 135, 161, 793
BfaI CTAG 1 cut(s) 456
BisI GCNGC 7 cut(s) 116, 210, 320, 453, 689, 852, 959
BlsI GCNGC 7 cut(s) 117, 211, 321, 454, 690, 853, 960
Bme1390I CCNGG 6 cut(s) 112, 127, 138, 198, 441, 902
Bme18I GGWCC 3 cut(s) 165, 429, 611
BmgT120I GGNCC 4 cut(s) 16, 165, 429, 611
BmiI GGNNCC 5 cut(s) 46, 149, 204, 430, 612
BmrFI CCNGG 6 cut(s) 112, 127, 138, 198, 441, 902
BmsI GCATC 3 cut(s) 262, 742, 838
BplI GAGNNNNNCTC 2 cut(s) 221, 253
BpmI CTGGAG 3 cut(s) 143, 807, 876
Bpu10I CCTNAGC 1 cut(s) 219
BpuMI CCSGG 3 cut(s) 127, 138, 198
BsaBI GATNNNNATC 1 cut(s) 836
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 197, 439, 900
BsaWI WCCGGW 2 cut(s) 144, 431
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 4 cut(s) 144, 181, 198, 785
Bse1I ACTGG 5 cut(s) 99, 304, 492, 614, 790
Bse3DI GCAATG 1 cut(s) 186
Bse8I GATNNNNATC 1 cut(s) 836
BseAI TCCGGA 1 cut(s) 431
BseBI CCWGG 3 cut(s) 112, 441, 902
BseDI CCNNGG 3 cut(s) 197, 439, 900
BseGI GGATG 3 cut(s) 277, 757, 925
BseJI GATNNNNATC 1 cut(s) 836
BseLI CCNNNNNNNGG 4 cut(s) 144, 181, 198, 785
BseMI GCAATG 1 cut(s) 186
BseNI ACTGG 5 cut(s) 99, 304, 492, 614, 790
BseRI GAGGAG 3 cut(s) 37, 40, 55
BseSI GKGCMC 1 cut(s) 703
BseXI GCAGC 6 cut(s) 221, 331, 439, 700, 838, 945
BseYI CCCAGC 1 cut(s) 275
BshFI GGCC 3 cut(s) 17, 115, 491
BsiHKAI GWGCWC 2 cut(s) 516, 703
BsiSI CCGG 7 cut(s) 127, 138, 145, 151, 197, 206, 432
BslFI GGGAC 1 cut(s) 624
BslI CCNNNNNNNGG 4 cut(s) 144, 181, 198, 785
BsmAI GTCTC 3 cut(s) 135, 161, 793
BsmFI GGGAC 1 cut(s) 624
BsmI GAATGC 1 cut(s) 535
BsnI GGCC 3 cut(s) 17, 115, 491
Bso31I GGTCTC 1 cut(s) 135
Bsp1286I GDGCHC 3 cut(s) 205, 516, 703
Bsp13I TCCGGA 1 cut(s) 431
Bsp143I GATC 1 cut(s) 837
BspACI CCGC 5 cut(s) 116, 240, 322, 358, 376
BspANI GGCC 3 cut(s) 17, 115, 491
BspEI TCCGGA 1 cut(s) 431
BspHI TCATGA 1 cut(s) 807
BspLI GGNNCC 5 cut(s) 46, 149, 204, 430, 612
BspTNI GGTCTC 1 cut(s) 135
BsrBI CCGCTC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 5 cut(s) 99, 304, 492, 614, 790
BssECI CCNNGG 3 cut(s) 197, 439, 900
BssMI GATC 1 cut(s) 837
Bst2UI CCWGG 3 cut(s) 112, 441, 902
Bst4CI ACNGT 4 cut(s) 193, 487, 664, 724
Bst6I CTCTTC 3 cut(s) 58, 79, 809
BstAPI GCANNNNNTGC 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 3 cut(s) 277, 757, 925
BstKTI GATC 1 cut(s) 840
BstMAI GTCTC 3 cut(s) 135, 161, 793
BstMBI GATC 1 cut(s) 837
BstMWI GCNNNNNNNGC 3 cut(s) 35, 209, 215
BstNI CCWGG 3 cut(s) 112, 441, 902
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 6 cut(s) 110, 125, 136, 196, 439, 900
BstSLI GKGCMC 1 cut(s) 703
BstV1I GCAGC 6 cut(s) 221, 331, 439, 700, 838, 945
BstXI CCANNNNNNTGG 1 cut(s) 94
BsuRI GGCC 3 cut(s) 17, 115, 491
BtsCI GGATG 3 cut(s) 277, 757, 925
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 5 cut(s) 92, 251, 297, 492, 729
CaiI CAGNNNCTG 1 cut(s) 958
CciI TCATGA 1 cut(s) 807
Cfr13I GGNCC 4 cut(s) 16, 165, 429, 611
CviAII CATG 3 cut(s) 316, 550, 808
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 839
DpnII GATC 1 cut(s) 837
EaeI YGGCCR 2 cut(s) 113, 489
Eam1104I CTCTTC 3 cut(s) 58, 79, 809
EarI CTCTTC 3 cut(s) 58, 79, 809
Eco24I GRGCYC 1 cut(s) 205
Eco31I GGTCTC 1 cut(s) 135
Eco47I GGWCC 3 cut(s) 165, 429, 611
EcoRII CCWGG 3 cut(s) 110, 439, 900
EcoT38I GRGCYC 1 cut(s) 205
FaeI CATG 3 cut(s) 319, 553, 811
FaiI YATR 7 cut(s) 216, 317, 551, 636, 809, 827, 842
FalI AAGNNNNNCTT 2 cut(s) 687, 719
FaqI GGGAC 1 cut(s) 624
FatI CATG 3 cut(s) 315, 549, 807
FauI CCCGC 2 cut(s) 351, 383
FbaI TGATCA 1 cut(s) 837
Fnu4HI GCNGC 7 cut(s) 116, 210, 320, 453, 689, 852, 959
FokI GGATG 3 cut(s) 284, 764, 932
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 7 cut(s) 116, 210, 320, 453, 689, 852, 959
FspBI CTAG 1 cut(s) 456
GluI GCNGC 7 cut(s) 116, 210, 320, 453, 689, 852, 959
GsaI CCCAGC 1 cut(s) 279
GsuI CTGGAG 3 cut(s) 143, 807, 876
HaeIII GGCC 3 cut(s) 17, 115, 491
HapII CCGG 7 cut(s) 127, 138, 145, 151, 197, 206, 432
Hin1II CATG 3 cut(s) 319, 553, 811
HincII GTYRAC 2 cut(s) 591, 718
HindII GTYRAC 2 cut(s) 591, 718
HinfI GANTC 5 cut(s) 154, 248, 646, 801, 884
HpaII CCGG 7 cut(s) 127, 138, 145, 151, 197, 206, 432
HphI GGTGA 1 cut(s) 879
Hpy166II GTNNAC 3 cut(s) 591, 701, 718
Hpy188I TCNGA 2 cut(s) 176, 189
Hpy188III TCNNGA 7 cut(s) 160, 432, 650, 796, 808, 821, 863
Hpy8I GTNNAC 3 cut(s) 591, 701, 718
Hpy99I CGWCG 2 cut(s) 107, 391
HpyAV CCTTC 5 cut(s) 274, 395, 489, 518, 766
HpyCH4III ACNGT 4 cut(s) 193, 487, 664, 724
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 4 cut(s) 319, 533, 701, 727
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 209, 215
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 386
Hsp92II CATG 3 cut(s) 319, 553, 811
Kpn2I TCCGGA 1 cut(s) 431
Ksp22I TGATCA 1 cut(s) 837
Kzo9I GATC 1 cut(s) 837
LmnI GCTCC 5 cut(s) 50, 147, 208, 355, 788
Lsp1109I GCAGC 6 cut(s) 221, 331, 439, 700, 838, 945
LweI GCATC 3 cut(s) 262, 742, 838
MaeI CTAG 1 cut(s) 456
MaeII ACGT 1 cut(s) 386
MaeIII GTNAC 1 cut(s) 295
MalI GATC 1 cut(s) 839
MbiI CCGCTC 1 cut(s) 358
MboI GATC 1 cut(s) 837
MboII GAAGA 4 cut(s) 45, 66, 683, 796
MhlI GDGCHC 3 cut(s) 205, 516, 703
MlsI TGGCCA 1 cut(s) 491
MluCI AATT 4 cut(s) 412, 578, 744, 964
MluNI TGGCCA 1 cut(s) 491
MlyI GAGTC 2 cut(s) 163, 795
MmeI TCCRAC 1 cut(s) 392
Mox20I TGGCCA 1 cut(s) 491
MroI TCCGGA 1 cut(s) 431
MscI TGGCCA 1 cut(s) 491
MseI TTAA 1 cut(s) 782
Msp20I TGGCCA 1 cut(s) 491
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 7 cut(s) 127, 138, 145, 151, 197, 206, 432
MspR9I CCNGG 6 cut(s) 112, 127, 138, 198, 441, 902
Mva1269I GAATGC 1 cut(s) 535
MvaI CCWGG 3 cut(s) 112, 441, 902
MwoI GCNNNNNNNGC 3 cut(s) 35, 209, 215
NciI CCSGG 3 cut(s) 127, 138, 198
NdeII GATC 1 cut(s) 837
NlaIII CATG 3 cut(s) 319, 553, 811
NlaIV GGNNCC 5 cut(s) 46, 149, 204, 430, 612
NmuCI GTSAC 1 cut(s) 295
NspI RCATGY 1 cut(s) 319
PagI TCATGA 1 cut(s) 807
PctI GAATGC 1 cut(s) 535
PfeI GAWTC 3 cut(s) 248, 646, 884
PkrI GCNGC 7 cut(s) 117, 211, 321, 454, 690, 853, 960
PleI GAGTC 2 cut(s) 162, 795
PpsI GAGTC 2 cut(s) 162, 795
Psp6I CCWGG 3 cut(s) 110, 439, 900
PspFI CCCAGC 1 cut(s) 275
PspGI CCWGG 3 cut(s) 110, 439, 900
PspN4I GGNNCC 5 cut(s) 46, 149, 204, 430, 612
PspPI GGNCC 4 cut(s) 16, 165, 429, 611
PstNI CAGNNNCTG 1 cut(s) 958
SaqAI TTAA 1 cut(s) 782
SatI GCNGC 7 cut(s) 116, 210, 320, 453, 689, 852, 959
Sau3AI GATC 1 cut(s) 837
Sau96I GGNCC 4 cut(s) 16, 165, 429, 611
SchI GAGTC 2 cut(s) 163, 795
ScrFI CCNGG 6 cut(s) 112, 127, 138, 198, 441, 902
SduI GDGCHC 3 cut(s) 205, 516, 703
SfaNI GCATC 3 cut(s) 262, 742, 838
SinI GGWCC 3 cut(s) 165, 429, 611
Sse9I AATT 4 cut(s) 412, 578, 744, 964
SsiI CCGC 5 cut(s) 116, 240, 322, 358, 376
SspI AATATT 2 cut(s) 558, 936
SspMI CTAG 1 cut(s) 456
StyD4I CCNGG 6 cut(s) 110, 125, 136, 196, 439, 900
TaaI ACNGT 4 cut(s) 193, 487, 664, 724
TaiI ACGT 1 cut(s) 389
TaqI TCGA 3 cut(s) 417, 566, 795
TasI AATT 4 cut(s) 412, 578, 744, 964
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 3 cut(s) 248, 646, 884
Tru1I TTAA 1 cut(s) 782
Tru9I TTAA 1 cut(s) 782
TscAI CASTG 5 cut(s) 99, 258, 304, 492, 729
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 6 cut(s) 209, 319, 452, 688, 851, 958
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 4 cut(s) 45, 566, 638, 796
TspGWI ACGGA 3 cut(s) 91, 157, 932
TspRI CASTG 5 cut(s) 99, 258, 304, 492, 729
VneI GTGCAC 1 cut(s) 699
VpaK11BI GGWCC 3 cut(s) 165, 429, 611
XapI RAATTY 3 cut(s) 412, 578, 964
XceI RCATGY 1 cut(s) 319
XcmI CCANNNNNNNNNTGG 2 cut(s) 91, 601
XspI CTAG 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.