AT3G59710

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008576
Physical Location & Seq
Reverse (-)
22054667 .. 22057156
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59710.1

Sequence Viewer

Length: 909 bp
ATGGACGTTGTCACGTTGATGTATGGTTTGATAACTTACATCATTTACGCTTACGGCATTATTCACGAGTGGTGGTCGGAAGAAACAACAGCGGTCGTGACCGGAGCAAACAAAGGTATAGGTTTTGCGGTGGTGAAGAGGTTATTAGAGCTTGGACTAACTGTAGTTTTAACTGCCCGAAACGCCGAAAATGGAAGCCAAGCCGCTGAATCCCTCCGCCGCATTGGCTTTGGAAACGTTCATTTTTGCTGCCTCGACATCTCCGATCCTTCTTCCATCGCCGCGTTCGCCTCTTGGTTCGGTCGCAACTTAGGAATACTCGACATTCTGGTGAACAATGCCGCCGTTTCATTTAACGCGGTGGGCGAGAATTTAATCAAAGAGCCAGAGACAATCATCAAGACCAATTTCTACGGTGCCAAGCTTTTAACGGAGGCGCTTTTGCCGTTGTTTCGGCGTTCCGTCTCCGTTAGTCGCATCCTTAACATGAGTTCAAGGCTTGGCACATTAAATAAACTGAGAAGCCCTAGTATAAGACGAATCCTAGAAAGTGAAGACCTTACCAATGAACAAATCGATGCGACATTGACTCAATTTCTGCAGGACGTGAAGAGCGGGACTTGGGAGAAGCAAGGATGGCCGGAGAACTGGCCGGACTACGCCATCTCAAAGTTGGCCTTAAACGCTTACTCTAGGGTTTTGGCTCGACGTTACGACGGCAAAAAACTGAGTGTGAATTGTTTATGCCCTGGTTTCACTCGTACGTCTATGACCGGTGGTCAGGGGACTCACACGGCGGATGAGGCTGCTGCCATTGTAGCCAAGTTGGTGTTGCTTCCTCCGGAGAAGCTGGCTACCGGAAAGTTCTATATATGCGTAGAGTCTAAAAAACTTATTTCCAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

302

Amino Acids

33.26

Weight (kDa)

8.88

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 30 - 169 5.3e-26 short chain dehydrogenase
KR PF08659 30 - 147 7.6e-06 KR domain
Epimerase PF01370 32 - 165 4.9e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 35 - 166 1.2e-17 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 210 - 264 2.4e-07 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 216 - 260 1.3e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 416
AccBSI CCGCTC 1 cut(s) 615
AccII CGCG 2 cut(s) 284, 359
AccIII TCCGGA 1 cut(s) 841
AclI AACGTT 1 cut(s) 237
AclWI GGATC 1 cut(s) 260
AcoI YGGCCR 2 cut(s) 638, 650
AcsI RAATTY 1 cut(s) 370
AfaI GTAC 1 cut(s) 763
AgeI ACCGGT 1 cut(s) 773
AgsI TTSAA 1 cut(s) 495
AhdI GACNNNNNGTC 1 cut(s) 777
AjiI CACGTC 1 cut(s) 607
AjnI CCWGG 1 cut(s) 748
AluBI AGCT 3 cut(s) 151, 424, 850
AluI AGCT 3 cut(s) 151, 424, 850
Alw26I GTCTC 2 cut(s) 383, 469
AlwI GGATC 1 cut(s) 260
Aor13HI TCCGGA 1 cut(s) 841
AoxI GGCC 3 cut(s) 638, 650, 675
ApeKI GCWGC 3 cut(s) 249, 806, 809
ApoI RAATTY 1 cut(s) 370
AsiGI ACCGGT 1 cut(s) 773
AspLEI GCGC 1 cut(s) 439
AsuHPI GGTGA 2 cut(s) 145, 343
BanI GGYRCC 1 cut(s) 416
BauI CACGAG 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 561
BbvI GCAGC 3 cut(s) 236, 793, 796
BccI CCATC 3 cut(s) 284, 630, 671
BceAI ACGGC 5 cut(s) 70, 329, 430, 733, 810
BciT130I CCWGG 1 cut(s) 750
BcoDI GTCTC 2 cut(s) 383, 469
BfaI CTAG 3 cut(s) 528, 545, 693
BfmI CTRYAG 2 cut(s) 162, 599
BfoI RGCGCY 1 cut(s) 440
BglI GCCNNNNNGGC 1 cut(s) 225
BisI GCNGC 7 cut(s) 204, 220, 250, 282, 342, 807, 810
BlsI GCNGC 7 cut(s) 205, 221, 251, 283, 343, 808, 811
Bme1390I CCNGG 1 cut(s) 750
BmeRI GACNNNNNGTC 1 cut(s) 777
BmgBI CACGTC 1 cut(s) 607
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 1 cut(s) 750
BmsI GCATC 2 cut(s) 486, 568
BpiI GAAGAC 1 cut(s) 561
Bsa29I ATCGAT 1 cut(s) 576
BsaJI CCNNGG 1 cut(s) 748
BsaWI WCCGGW 4 cut(s) 101, 773, 841, 857
Bse118I RCCGGY 1 cut(s) 773
Bse1I ACTGG 1 cut(s) 653
BseAI TCCGGA 1 cut(s) 841
BseBI CCWGG 1 cut(s) 750
BseCI ATCGAT 1 cut(s) 576
BseDI CCNNGG 1 cut(s) 748
BseGI GGATG 3 cut(s) 477, 641, 805
BseMII CTCAG 2 cut(s) 509, 719
BseNI ACTGG 1 cut(s) 653
BseXI GCAGC 3 cut(s) 236, 793, 796
Bsh1236I CGCG 2 cut(s) 284, 359
Bsh1285I CGRYCG 2 cut(s) 96, 304
BshFI GGCC 3 cut(s) 640, 652, 677
BshNI GGYRCC 1 cut(s) 416
BshTI ACCGGT 1 cut(s) 773
BshVI ATCGAT 1 cut(s) 576
BsiEI CGRYCG 2 cut(s) 96, 304
BsiSI CCGG 6 cut(s) 102, 641, 653, 774, 842, 858
BsiWI CGTACG 1 cut(s) 761
BslFI GGGAC 2 cut(s) 631, 799
BsmAI GTCTC 2 cut(s) 383, 469
BsmBI CGTCTC 1 cut(s) 469
BsmFI GGGAC 2 cut(s) 631, 799
BsnI GGCC 3 cut(s) 640, 652, 677
Bsp13I TCCGGA 1 cut(s) 841
Bsp143I GATC 1 cut(s) 265
BspANI GGCC 3 cut(s) 640, 652, 677
BspCNI CTCAG 2 cut(s) 510, 720
BspDI ATCGAT 1 cut(s) 576
BspEI TCCGGA 1 cut(s) 841
BspFNI CGCG 2 cut(s) 284, 359
BspLI GGNNCC 1 cut(s) 418
BspMAI CTGCAG 1 cut(s) 603
BspPI GGATC 1 cut(s) 260
BspQI GCTCTTC 1 cut(s) 605
BspT107I GGYRCC 1 cut(s) 416
BsrBI CCGCTC 1 cut(s) 615
BsrFI RCCGGY 1 cut(s) 773
BsrI ACTGG 1 cut(s) 653
BssAI RCCGGY 1 cut(s) 773
BssECI CCNNGG 1 cut(s) 748
BssMI GATC 1 cut(s) 265
BssSI CACGAG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 750
Bst4CI ACNGT 2 cut(s) 163, 416
Bst6I CTCTTC 2 cut(s) 131, 605
BstC8I GCNNGC 1 cut(s) 852
BstDEI CTNAG 3 cut(s) 310, 518, 728
BstF5I GGATG 3 cut(s) 477, 641, 805
BstFNI CGCG 2 cut(s) 284, 359
BstH2I RGCGCY 1 cut(s) 440
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 1 cut(s) 268
BstMAI GTCTC 2 cut(s) 383, 469
BstMBI GATC 1 cut(s) 265
BstMCI CGRYCG 2 cut(s) 96, 304
BstMWI GCNNNNNNNGC 7 cut(s) 182, 225, 287, 637, 683, 803, 818
BstNI CCWGG 1 cut(s) 750
BstSCI CCNGG 1 cut(s) 748
BstSFI CTRYAG 2 cut(s) 162, 599
BstUI CGCG 2 cut(s) 284, 359
BstV1I GCAGC 3 cut(s) 236, 793, 796
BstV2I GAAGAC 1 cut(s) 561
Bsu15I ATCGAT 1 cut(s) 576
BsuRI GGCC 3 cut(s) 640, 652, 677
BsuTUI ATCGAT 1 cut(s) 576
BtgZI GCGATG 1 cut(s) 262
BtrI CACGTC 1 cut(s) 607
BtsCI GGATG 3 cut(s) 477, 641, 805
Cac8I GCNNGC 1 cut(s) 852
CfoI GCGC 1 cut(s) 439
Cfr10I RCCGGY 1 cut(s) 773
ClaI ATCGAT 1 cut(s) 576
Csp6I GTAC 1 cut(s) 762
CspAI ACCGGT 1 cut(s) 773
CviAII CATG 1 cut(s) 487
CviQI GTAC 1 cut(s) 762
DdeI CTNAG 3 cut(s) 310, 518, 728
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
DriI GACNNNNNGTC 1 cut(s) 777
EaeI YGGCCR 2 cut(s) 638, 650
Eam1104I CTCTTC 2 cut(s) 131, 605
Eam1105I GACNNNNNGTC 1 cut(s) 777
EarI CTCTTC 2 cut(s) 131, 605
EciI GGCGGA 2 cut(s) 206, 812
EcoRII CCWGG 1 cut(s) 748
Esp3I CGTCTC 1 cut(s) 469
FaeI CATG 1 cut(s) 490
FaiI YATR 9 cut(s) 24, 119, 488, 533, 745, 770, 870, 872, 874
FalI AAGNNNNNCTT 2 cut(s) 662, 694
FaqI GGGAC 2 cut(s) 631, 799
FatI CATG 1 cut(s) 486
FauI CCCGC 1 cut(s) 608
Fnu4HI GCNGC 7 cut(s) 204, 220, 250, 282, 342, 807, 810
FokI GGATG 3 cut(s) 464, 648, 812
Fsp4HI GCNGC 7 cut(s) 204, 220, 250, 282, 342, 807, 810
FspBI CTAG 3 cut(s) 528, 545, 693
GlaI GCGC 1 cut(s) 438
GluI GCNGC 7 cut(s) 204, 220, 250, 282, 342, 807, 810
HaeII RGCGCY 1 cut(s) 440
HaeIII GGCC 3 cut(s) 640, 652, 677
HapII CCGG 6 cut(s) 102, 641, 653, 774, 842, 858
HhaI GCGC 1 cut(s) 439
Hin1II CATG 1 cut(s) 490
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 5 cut(s) 209, 540, 589, 787, 881
HpaII CCGG 6 cut(s) 102, 641, 653, 774, 842, 858
HphI GGTGA 2 cut(s) 145, 343
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 79, 265
Hpy188III TCNNGA 4 cut(s) 65, 97, 400, 842
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 2 cut(s) 711, 719
HpyAV CCTTC 1 cut(s) 279
HpyCH4III ACNGT 2 cut(s) 163, 416
HpyCH4IV ACGT 6 cut(s) 6, 14, 237, 606, 709, 764
HpyCH4V TGCA 1 cut(s) 601
HpyF10VI GCNNNNNNNGC 7 cut(s) 182, 225, 287, 637, 683, 803, 818
HpyF3I CTNAG 3 cut(s) 310, 518, 728
HpySE526I ACGT 6 cut(s) 6, 14, 237, 606, 709, 764
Hsp92II CATG 1 cut(s) 490
HspAI GCGC 1 cut(s) 437
Kpn2I TCCGGA 1 cut(s) 841
Kzo9I GATC 1 cut(s) 265
LguI GCTCTTC 1 cut(s) 605
LmnI GCTCC 1 cut(s) 104
Lsp1109I GCAGC 3 cut(s) 236, 793, 796
LweI GCATC 2 cut(s) 486, 568
MaeI CTAG 3 cut(s) 528, 545, 693
MaeII ACGT 6 cut(s) 6, 14, 237, 606, 709, 764
MaeIII GTNAC 3 cut(s) 10, 97, 710
MalI GATC 1 cut(s) 267
MbiI CCGCTC 1 cut(s) 615
MboI GATC 1 cut(s) 265
MboII GAAGA 5 cut(s) 92, 148, 264, 566, 622
MluCI AATT 4 cut(s) 370, 406, 593, 736
MlyI GAGTC 3 cut(s) 583, 781, 890
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 7 cut(s) 132, 224, 263, 301, 427, 796, 849
MroI TCCGGA 1 cut(s) 841
MseI TTAA 7 cut(s) 170, 354, 374, 428, 483, 509, 680
MslI CAYNNNNRTG 2 cut(s) 17, 329
MspA1I CMGCKG 2 cut(s) 92, 206
MspI CCGG 6 cut(s) 102, 641, 653, 774, 842, 858
MspR9I CCNGG 1 cut(s) 750
MvaI CCWGG 1 cut(s) 750
MvnI CGCG 2 cut(s) 284, 359
MwoI GCNNNNNNNGC 7 cut(s) 182, 225, 287, 637, 683, 803, 818
NdeII GATC 1 cut(s) 265
NlaIII CATG 1 cut(s) 490
NlaIV GGNNCC 1 cut(s) 418
NmuCI GTSAC 2 cut(s) 10, 97
PciSI GCTCTTC 1 cut(s) 605
PcsI WCGNNNNNNNCGW 2 cut(s) 261, 363
PfeI GAWTC 2 cut(s) 209, 540
Pfl23II CGTACG 1 cut(s) 761
PflFI GACNNNGTC 1 cut(s) 8
PinAI ACCGGT 1 cut(s) 773
PkrI GCNGC 7 cut(s) 205, 221, 251, 283, 343, 808, 811
PleI GAGTC 3 cut(s) 583, 781, 889
PpsI GAGTC 3 cut(s) 583, 781, 889
Psp1406I AACGTT 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 748
PspGI CCWGG 1 cut(s) 748
PspLI CGTACG 1 cut(s) 761
PspN4I GGNNCC 1 cut(s) 418
PstI CTGCAG 1 cut(s) 603
PsyI GACNNNGTC 1 cut(s) 8
RsaI GTAC 1 cut(s) 763
RsaNI GTAC 1 cut(s) 762
RseI CAYNNNNRTG 2 cut(s) 17, 329
SapI GCTCTTC 1 cut(s) 605
SaqAI TTAA 7 cut(s) 170, 354, 374, 428, 483, 509, 680
SatI GCNGC 7 cut(s) 204, 220, 250, 282, 342, 807, 810
Sau3AI GATC 1 cut(s) 265
SchI GAGTC 3 cut(s) 583, 781, 890
ScrFI CCNGG 1 cut(s) 750
SfaNI GCATC 2 cut(s) 486, 568
SfcI CTRYAG 2 cut(s) 162, 599
SmiMI CAYNNNNRTG 2 cut(s) 17, 329
Sse9I AATT 4 cut(s) 370, 406, 593, 736
SspMI CTAG 3 cut(s) 528, 545, 693
StyD4I CCNGG 1 cut(s) 748
TaaI ACNGT 2 cut(s) 163, 416
TaiI ACGT 6 cut(s) 9, 17, 240, 609, 712, 767
TaqI TCGA 4 cut(s) 255, 321, 576, 706
TaqII GACCGA 1 cut(s) 290
TasI AATT 4 cut(s) 370, 406, 593, 736
TauI GCSGC 4 cut(s) 206, 222, 284, 344
TfiI GAWTC 2 cut(s) 209, 540
Tru1I TTAA 7 cut(s) 170, 354, 374, 428, 483, 509, 680
Tru9I TTAA 7 cut(s) 170, 354, 374, 428, 483, 509, 680
TseFI GTSAC 2 cut(s) 10, 97
TseI GCWGC 3 cut(s) 249, 806, 809
Tsp45I GTSAC 2 cut(s) 10, 97
TspDTI ATGAA 3 cut(s) 230, 339, 582
TspGWI ACGGA 3 cut(s) 446, 451, 457
Tth111I GACNNNGTC 1 cut(s) 8
XapI RAATTY 1 cut(s) 370
XcmI CCANNNNNNNNNTGG 1 cut(s) 670
XspI CTAG 3 cut(s) 528, 545, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.