FvH4_4g10060

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0008576
Physical Location & Seq
Reverse (-)
12733807 .. 12736048
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10060.t1

Sequence Viewer

Length: 924 bp
ATGCAGTTCAAAGAAACAGACCGGCTCCTTATTCCTTCTCCGTCCCACTCCTCAACAAGGTGGTGGTCGGAGGAGACAGTGGCCATAGTGACCGGAGCAAACAAAGGAATTGGGTTTGCGGTGGTGAAGAGAATGGCGGAGTTGGGACTGAAAGTGATCTTAACAGCCAGAGACAGTGAAAGGGGTTGCAAGGCTGTTGAAGCACTTAGGACTCAAGGTCTTCATAGTATTATCTTTTATCGCCTCGATGTTTCTGATCCTTGTTCCATCAACACCTTCGCTTCCTGGTTCAAAGAAAACTTTACAGCCTTGGATATTCTTGTGAACAACGCAGCAGTTTCGTTCAACGAAATCAATGAAAATTCAGTGGAACATACCGAGACCGTAATCAGAACCAATTTCAATGGACCAAAGTTACTGACTGAGGCTCTCTTGCCCATGTTCCGTACCTCCTCCATGAGTCGAATACTCAATGTCAGCTCCAGACTTGGTTCCCTGAATAAGGTGGGAAACCCTAACATAAAACAGGTTCTTGAAAGCGAGAAACTATCGGAGGACGATATTGAGGGAATTGTTAGCTTGTTTCTGGAACAAGTGAAGACCGGGACATGGAAGACCGGAGGTTGGCCTGAACTGTGGACGGACTATGCGGTTTCAAAGCTTGCACTGAATGCATACACTAGGGTTTTGGCAAAGCGCTACAGAGGAAGAGGTTTGAGCGTGAATAGCTTCTGTCCCGGCTTCACTCAGACCTCGATGACTCGATGCAAGGGAGATCACACAGCGGACGATGTCGCTATCGTTGCTGCTAGGCTGGCTTTGCTTCCGCCGGACAATATACAAAGTGGGAAGTTTTTTCTATGGGGTATTAGCGGTGGTAGTAGTACCAGTAATAATACCTTGGTGGTTTCCTCCAAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

308

Amino Acids

33.83

Weight (kDa)

8.84

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 27 - 166 5.1e-30 short chain dehydrogenase
KR PF08659 28 - 165 1.2e-08 KR domain
Epimerase PF01370 29 - 161 3.2e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 32 - 163 9e-21 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 209 - 256 1.4e-06 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 212 - 257 4.1e-07 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 119, 137, 650, 785, 827, 873
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 1 cut(s) 361
AfaI GTAC 2 cut(s) 448, 886
AfeI AGCGCT 1 cut(s) 698
AfiI CCNNNNNNNGG 4 cut(s) 57, 502, 609, 624
AgsI TTSAA 7 cut(s) 10, 200, 292, 346, 403, 536, 657
AhdI GACNNNNNGTC 1 cut(s) 216
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 4 cut(s) 480, 579, 661, 729
AluI AGCT 4 cut(s) 480, 579, 661, 729
Alw26I GTCTC 3 cut(s) 68, 165, 374
AlwI GGATC 1 cut(s) 251
Aor51HI AGCGCT 1 cut(s) 698
AoxI GGCC 2 cut(s) 81, 626
ApeKI GCWGC 2 cut(s) 332, 806
ApoI RAATTY 1 cut(s) 361
Asp700I GAANNNNTTC 1 cut(s) 728
AspLEI GCGC 1 cut(s) 699
AspS9I GGNCC 1 cut(s) 407
AsuC2I CCSGG 2 cut(s) 604, 738
AsuHPI GGTGA 1 cut(s) 136
AvaII GGWCC 1 cut(s) 407
BalI TGGCCA 1 cut(s) 83
BbsI GAAGAC 3 cut(s) 212, 605, 620
BbvI GCAGC 2 cut(s) 344, 793
BccI CCATC 1 cut(s) 275
BcgI CGANNNNNNTGC 2 cut(s) 321, 355
BciT130I CCWGG 1 cut(s) 286
BcnI CCSGG 2 cut(s) 604, 738
BcoDI GTCTC 3 cut(s) 68, 165, 374
BfaI CTAG 2 cut(s) 681, 810
BfmI CTRYAG 1 cut(s) 700
BfoI RGCGCY 1 cut(s) 700
BisI GCNGC 2 cut(s) 333, 807
BlsI GCNGC 2 cut(s) 334, 808
Bme1390I CCNGG 3 cut(s) 286, 604, 738
Bme18I GGWCC 1 cut(s) 407
BmeRI GACNNNNNGTC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 2 cut(s) 26, 493
BmrFI CCNGG 3 cut(s) 286, 604, 738
BmsI GCATC 1 cut(s) 755
BpiI GAAGAC 3 cut(s) 212, 605, 620
BpmI CTGGAG 1 cut(s) 466
BpuEI CTTGAG 1 cut(s) 198
BpuMI CCSGG 2 cut(s) 604, 738
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 309, 900
BsaWI WCCGGW 2 cut(s) 92, 617
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 502, 609, 624
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 888
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 309, 900
BseLI CCNNNNNNNGG 4 cut(s) 57, 502, 609, 624
BseMII CTCAG 2 cut(s) 414, 761
BseNI ACTGG 1 cut(s) 888
BseRI GAGGAG 3 cut(s) 40, 86, 442
BseXI GCAGC 2 cut(s) 344, 793
BshFI GGCC 2 cut(s) 83, 628
BsiSI CCGG 6 cut(s) 22, 93, 603, 618, 738, 830
BslFI GGGAC 4 cut(s) 28, 159, 619, 720
BslI CCNNNNNNNGG 4 cut(s) 57, 502, 609, 624
BsmAI GTCTC 3 cut(s) 68, 165, 374
BsmFI GGGAC 4 cut(s) 28, 159, 619, 720
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 2 cut(s) 83, 628
Bso31I GGTCTC 1 cut(s) 374
Bsp143I GATC 3 cut(s) 156, 256, 775
BspACI CCGC 6 cut(s) 119, 137, 650, 785, 827, 873
BspANI GGCC 2 cut(s) 83, 628
BspCNI CTCAG 2 cut(s) 415, 760
BspLI GGNNCC 2 cut(s) 26, 493
BspPI GGATC 1 cut(s) 251
BspTNI GGTCTC 1 cut(s) 374
BsrFI RCCGGY 1 cut(s) 21
BsrI ACTGG 1 cut(s) 888
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 309, 900
BssMI GATC 3 cut(s) 156, 256, 775
BssT1I CCWWGG 2 cut(s) 309, 900
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 4 cut(s) 79, 176, 385, 636
Bst6I CTCTTC 2 cut(s) 122, 703
BstAPI GCANNNNNTGC 1 cut(s) 671
BstC8I GCNNGC 2 cut(s) 663, 816
BstDEI CTNAG 3 cut(s) 206, 423, 747
BstENI CCTNNNNNAGG 2 cut(s) 55, 500
BstH2I RGCGCY 1 cut(s) 700
BstHHI GCGC 1 cut(s) 699
BstKTI GATC 3 cut(s) 159, 259, 778
BstMAI GTCTC 3 cut(s) 68, 165, 374
BstMBI GATC 3 cut(s) 156, 256, 775
BstMWI GCNNNNNNNGC 6 cut(s) 200, 671, 726, 803, 815, 820
BstNI CCWGG 1 cut(s) 286
BstSCI CCNGG 3 cut(s) 284, 602, 736
BstSFI CTRYAG 1 cut(s) 700
BstV1I GCAGC 2 cut(s) 344, 793
BstV2I GAAGAC 3 cut(s) 212, 605, 620
BsuRI GGCC 2 cut(s) 83, 628
BtsIMutI CAGTG 4 cut(s) 84, 181, 372, 665
Cac8I GCNNGC 2 cut(s) 663, 816
CfoI GCGC 1 cut(s) 699
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 407
Csp6I GTAC 2 cut(s) 447, 885
CviAII CATG 3 cut(s) 439, 457, 609
CviQI GTAC 2 cut(s) 447, 885
DdeI CTNAG 3 cut(s) 206, 423, 747
DpnI GATC 3 cut(s) 158, 258, 777
DpnII GATC 3 cut(s) 156, 256, 775
DriI GACNNNNNGTC 1 cut(s) 216
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 2 cut(s) 122, 703
Eam1105I GACNNNNNGTC 1 cut(s) 216
EarI CTCTTC 2 cut(s) 122, 703
EciI GGCGGA 2 cut(s) 152, 816
Eco130I CCWWGG 2 cut(s) 309, 900
Eco31I GGTCTC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 407
Eco47III AGCGCT 1 cut(s) 698
EcoNI CCTNNNNNAGG 2 cut(s) 55, 500
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 2 cut(s) 309, 900
EcoT22I ATGCAT 1 cut(s) 676
ErhI CCWWGG 2 cut(s) 309, 900
FaeI CATG 3 cut(s) 442, 460, 612
FaqI GGGAC 4 cut(s) 28, 159, 619, 720
FatI CATG 3 cut(s) 438, 456, 608
Fnu4HI GCNGC 2 cut(s) 333, 807
Fsp4HI GCNGC 2 cut(s) 333, 807
FspBI CTAG 2 cut(s) 681, 810
GlaI GCGC 1 cut(s) 698
GluI GCNGC 2 cut(s) 333, 807
GsuI CTGGAG 1 cut(s) 466
HaeII RGCGCY 1 cut(s) 700
HaeIII GGCC 2 cut(s) 83, 628
HapII CCGG 6 cut(s) 22, 93, 603, 618, 738, 830
HhaI GCGC 1 cut(s) 699
Hin1II CATG 3 cut(s) 442, 460, 612
Hin6I GCGC 1 cut(s) 697
HinP1I GCGC 1 cut(s) 697
HindIII AAGCTT 1 cut(s) 659
HinfI GANTC 3 cut(s) 211, 460, 760
HpaII CCGG 6 cut(s) 22, 93, 603, 618, 738, 830
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 2 cut(s) 325, 639
Hpy188I TCNGA 5 cut(s) 70, 256, 392, 553, 750
Hpy188III TCNNGA 3 cut(s) 483, 533, 587
Hpy8I GTNNAC 2 cut(s) 325, 639
HpyAV CCTTC 2 cut(s) 45, 286
HpyCH4III ACNGT 4 cut(s) 79, 176, 385, 636
HpyCH4V TGCA 5 cut(s) 4, 189, 665, 674, 768
HpyF10VI GCNNNNNNNGC 6 cut(s) 200, 671, 726, 803, 815, 820
HpyF3I CTNAG 3 cut(s) 206, 423, 747
Hsp92II CATG 3 cut(s) 442, 460, 612
HspAI GCGC 1 cut(s) 697
Kzo9I GATC 3 cut(s) 156, 256, 775
LmnI GCTCC 3 cut(s) 30, 95, 485
Lsp1109I GCAGC 2 cut(s) 344, 793
LweI GCATC 1 cut(s) 755
MaeI CTAG 2 cut(s) 681, 810
MaeIII GTNAC 2 cut(s) 88, 414
MalI GATC 3 cut(s) 158, 258, 777
MboI GATC 3 cut(s) 156, 256, 775
MboII GAAGA 5 cut(s) 139, 212, 610, 625, 720
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 4 cut(s) 108, 361, 397, 570
MluNI TGGCCA 1 cut(s) 83
MlyI GAGTC 3 cut(s) 205, 469, 754
MmeI TCCRAC 1 cut(s) 48
Mox20I TGGCCA 1 cut(s) 83
Mph1103I ATGCAT 1 cut(s) 676
MroXI GAANNNNTTC 1 cut(s) 728
MscI TGGCCA 1 cut(s) 83
MseI TTAA 1 cut(s) 161
Msp20I TGGCCA 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 785
MspI CCGG 6 cut(s) 22, 93, 603, 618, 738, 830
MspR9I CCNGG 3 cut(s) 286, 604, 738
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 1 cut(s) 286
MwoI GCNNNNNNNGC 6 cut(s) 200, 671, 726, 803, 815, 820
NciI CCSGG 2 cut(s) 604, 738
NdeII GATC 3 cut(s) 156, 256, 775
NlaIII CATG 3 cut(s) 442, 460, 612
NlaIV GGNNCC 2 cut(s) 26, 493
NmuCI GTSAC 1 cut(s) 88
NsiI ATGCAT 1 cut(s) 676
PctI GAATGC 1 cut(s) 676
PdmI GAANNNNTTC 1 cut(s) 728
PflFI GACNNNGTC 1 cut(s) 791
PkrI GCNGC 2 cut(s) 334, 808
PleI GAGTC 3 cut(s) 205, 468, 754
PpsI GAGTC 3 cut(s) 205, 468, 754
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 2 cut(s) 26, 493
PspPI GGNCC 1 cut(s) 407
PsyI GACNNNGTC 1 cut(s) 791
RsaI GTAC 2 cut(s) 448, 886
RsaNI GTAC 2 cut(s) 447, 885
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 2 cut(s) 333, 807
Sau3AI GATC 3 cut(s) 156, 256, 775
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 3 cut(s) 205, 469, 754
ScrFI CCNGG 3 cut(s) 286, 604, 738
SfaNI GCATC 1 cut(s) 755
SfcI CTRYAG 1 cut(s) 700
SinI GGWCC 1 cut(s) 407
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
Sse9I AATT 4 cut(s) 108, 361, 397, 570
SsiI CCGC 6 cut(s) 119, 137, 650, 785, 827, 873
SspMI CTAG 2 cut(s) 681, 810
StyD4I CCNGG 3 cut(s) 284, 602, 736
StyI CCWWGG 2 cut(s) 309, 900
TaaI ACNGT 4 cut(s) 79, 176, 385, 636
TaqI TCGA 4 cut(s) 246, 463, 755, 763
TasI AATT 4 cut(s) 108, 361, 397, 570
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 4 cut(s) 84, 181, 372, 672
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 2 cut(s) 332, 806
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 212, 372
TspGWI ACGGA 3 cut(s) 30, 434, 656
TspRI CASTG 4 cut(s) 84, 181, 372, 672
Tth111I GACNNNGTC 1 cut(s) 791
VpaK11BI GGWCC 1 cut(s) 407
XagI CCTNNNNNAGG 2 cut(s) 55, 500
XapI RAATTY 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 728
XspI CTAG 2 cut(s) 681, 810
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.