Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008576

Physical Location & Seq

Genomic Coordinates Forward (+)

8225511 .. 8227675

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G102900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGACTCCAACGAAGCTGAGCTCTCTTTTCTTTCTCCTTCCCTCTCCCCAACCAGCAGATGGTGGTCGGAGGACACAGTAGCCATAGTTACTGGTGCAAACAAGGGCATTGGGTTTGCGCTTGTGAAGAGGATGGCGGAGTTAGGGGTGACGGTCATATTAACAGCCCGAGACATTGAAAGGGGTTGCAAAGCTGTGGAGGCTCTGAGAGCCCAAGGTCTTTACAATGTAGCCTTCTCTTGCCTCGATGTATCGGACCCTTCTTCAATCAGAGCATTCACATCCTGGTTCAGCAAACGCTATGCAGCCTTGGATATTCTTGTAAACAACGCAGCTGTATCGTTTAATGATCTCAATGAAAACTCGGTGGAACATGCGGAGACAGTGATGAAAACCAATTTCTATGGACCCAAGTTGCTGACTGAGGCCCTCTTGCCCATGTTTCGTAGCTCTTCCTCAGTAAGTCGGATTCTTAACGTTAGCTCCAGACTTGGCTCACTAAATCAGCTAAGAAACCCTAGCATAAAACAAGTTATGAAAAGTGAAAGACTATCGGAAGAGGAGATTGAAGGGGTGGTTAATTTGTTTCTCGACGACGTGAAGAGCGGCACATGGAAGAGCAAAGGGTGGCCGAAATTATGGACCGACTATGCTGTGTCAAAGCTTGCACTCAACGCATATACAAGAGTTTTGGCAAAGCGATATGAGGGAAGGGGTTTGAGTGTGAATAGCTTCTGTCCAGGCTTCACACAGACATCTATGACTCATTGTAAGGGCGACCACACCGCAGATGATGCCGCGGGTATGGCTGCTAGGCTGGCCTTGCTTCCTTCTCACCAGATTCCATCTGGAAAATTTTTCTTCTGGGGTAGTAGTAATGCTATTTCCTCTAAATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

300

Amino Acids

32.81

Weight (kDa)

8.82

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59710 AT3G59710 AT3G59710
fragaria_vesca	FvH4_4g10060 FvH4_7g25260 FvH4_7g25260 FvH4_7g25260 FvH4_7g25260 FvH4_7g25260
malus_domestica	MD02G1258700.v1.1 MD07G1062100.v1.1
prunus_persica	Prupe.1G102900_v2.0.a1
pyrus_communis	pycom02g21990
rosa_chinensis	RchiOBHm_Chr4g0405731
rosa_laevigata	RLG00000008824
rosa_multiflora	Rmu_sc0001200.1_g000020
rosa_roxburghii	Rroxscaffold_5G00350230
rosa_rugosa	Rorug04G0062000
rosa_samantha	Rh4AG133500 Rh4BG128500 Rh4CG141300 Rh4DG128100
rosa_wichuraiana	Rw4G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	60
AccBSI	CCGCTC	1 cut(s)	606
AccII	CGCG	1 cut(s)	800
AciI	CCGC	6 cut(s)	137, 377, 606, 786, 798, 800
AclI	AACGTT	1 cut(s)	477
AcoI	YGGCCR	1 cut(s)	629
AcsI	RAATTY	1 cut(s)	854
AfiI	CCNNNNNNNGG	1 cut(s)	60
AgsI	TTSAA	3 cut(s)	179, 267, 569
AjiI	CACGTC	1 cut(s)	598
AjnI	CCWGG	2 cut(s)	284, 739
AluBI	AGCT	9 cut(s)	17, 22, 194, 335, 450, 483, 508, 664, 732
AluI	AGCT	9 cut(s)	17, 22, 194, 335, 450, 483, 508, 664, 732
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	2 cut(s)	165, 374
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	3 cut(s)	426, 629, 819
ApeKI	GCWGC	3 cut(s)	305, 332, 809
ApoI	RAATTY	1 cut(s)	854
Asp700I	GAANNNNTTC	1 cut(s)	731
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	4 cut(s)	256, 407, 427, 642
AsuHPI	GGTGA	2 cut(s)	160, 827
AvaI	CYCGRG	1 cut(s)	168
AvaII	GGWCC	3 cut(s)	256, 407, 642
BanII	GRGCYC	2 cut(s)	24, 214
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	3 cut(s)	317, 344, 796
BccI	CCATC	3 cut(s)	54, 127, 853
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BciT130I	CCWGG	2 cut(s)	286, 741
BcoDI	GTCTC	2 cut(s)	165, 374
BfaI	CTAG	2 cut(s)	519, 813
BisI	GCNGC	5 cut(s)	306, 333, 607, 798, 810
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	5 cut(s)	307, 334, 608, 799, 811
Bme1390I	CCNGG	2 cut(s)	286, 741
Bme18I	GGWCC	3 cut(s)	256, 407, 642
BmeT110I	CYCGRG	1 cut(s)	168
BmgBI	CACGTC	1 cut(s)	598
BmgT120I	GGNCC	4 cut(s)	256, 407, 427, 642
BmiI	GGNNCC	2 cut(s)	258, 409
BmrFI	CCNGG	2 cut(s)	286, 741
BmsI	GCATC	1 cut(s)	784
BpmI	CTGGAG	1 cut(s)	469
Bpu1102I	GCTNAGC	1 cut(s)	18
BsaJI	CCNNGG	3 cut(s)	214, 309, 798
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	1 cut(s)	60
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	2 cut(s)	286, 741
BseDI	CCNNGG	3 cut(s)	214, 309, 798
BseGI	GGATG	2 cut(s)	138, 281
BseLI	CCNNNNNNNGG	1 cut(s)	60
BseMII	CTCAG	4 cut(s)	9, 197, 414, 471
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	1 cut(s)	575
BseXI	GCAGC	3 cut(s)	317, 344, 796
Bsh1236I	CGCG	1 cut(s)	800
BshFI	GGCC	3 cut(s)	428, 631, 821
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	60
BsmAI	GTCTC	2 cut(s)	165, 374
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	3 cut(s)	428, 631, 821
BsoBI	CYCGRG	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	24, 214
Bsp143I	GATC	1 cut(s)	349
Bsp1720I	GCTNAGC	1 cut(s)	18
BspACI	CCGC	6 cut(s)	137, 377, 606, 786, 798, 800
BspANI	GGCC	3 cut(s)	428, 631, 821
BspCNI	CTCAG	4 cut(s)	10, 198, 415, 470
BspFNI	CGCG	1 cut(s)	800
BspLI	GGNNCC	2 cut(s)	258, 409
BspQI	GCTCTTC	3 cut(s)	457, 596, 611
BsrBI	CCGCTC	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	214, 309, 798
BssMI	GATC	1 cut(s)	349
BssT1I	CCWWGG	2 cut(s)	214, 309
Bst2UI	CCWGG	2 cut(s)	286, 741
Bst4CI	ACNGT	3 cut(s)	79, 154, 385
Bst6I	CTCTTC	5 cut(s)	122, 457, 552, 596, 611
BstAPI	GCANNNNNTGC	1 cut(s)	794
BstC8I	GCNNGC	2 cut(s)	666, 819
BstDEI	CTNAG	5 cut(s)	18, 206, 423, 457, 509
BstDSI	CCRYGG	1 cut(s)	798
BstF5I	GGATG	2 cut(s)	138, 281
BstFNI	CGCG	1 cut(s)	800
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	2 cut(s)	165, 374
BstMBI	GATC	1 cut(s)	349
BstMWI	GCNNNNNNNGC	7 cut(s)	200, 209, 674, 794, 806, 818, 823
BstNI	CCWGG	2 cut(s)	286, 741
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	2 cut(s)	284, 739
BstUI	CGCG	1 cut(s)	800
BstV1I	GCAGC	3 cut(s)	317, 344, 796
BsuRI	GGCC	3 cut(s)	428, 631, 821
BtgI	CCRYGG	1 cut(s)	798
BtrI	CACGTC	1 cut(s)	598
BtsCI	GGATG	2 cut(s)	138, 281
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	666, 819
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	4 cut(s)	256, 407, 427, 642
Cfr42I	CCGCGG	1 cut(s)	801
CviAII	CATG	3 cut(s)	374, 439, 612
DdeI	CTNAG	5 cut(s)	18, 206, 423, 457, 509
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	629
Eam1104I	CTCTTC	5 cut(s)	122, 457, 552, 596, 611
EarI	CTCTTC	5 cut(s)	122, 457, 552, 596, 611
EciI	GGCGGA	1 cut(s)	152
Ecl136II	GAGCTC	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	214, 309
Eco24I	GRGCYC	2 cut(s)	24, 214
Eco47I	GGWCC	3 cut(s)	256, 407, 642
Eco53kI	GAGCTC	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	22
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRII	CCWGG	2 cut(s)	284, 739
EcoT14I	CCWWGG	2 cut(s)	214, 309
EcoT38I	GRGCYC	2 cut(s)	24, 214
ErhI	CCWWGG	2 cut(s)	214, 309
FaeI	CATG	3 cut(s)	377, 442, 615
FatI	CATG	3 cut(s)	373, 438, 611
FauI	CCCGC	1 cut(s)	793
Fnu4HI	GCNGC	5 cut(s)	306, 333, 607, 798, 810
FokI	GGATG	2 cut(s)	145, 268
FriOI	GRGCYC	2 cut(s)	24, 214
Fsp4HI	GCNGC	5 cut(s)	306, 333, 607, 798, 810
FspBI	CTAG	2 cut(s)	519, 813
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	5 cut(s)	306, 333, 607, 798, 810
GsuI	CTGGAG	1 cut(s)	469
HaeIII	GGCC	3 cut(s)	428, 631, 821
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	3 cut(s)	377, 442, 615
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	4 cut(s)	5, 469, 763, 841
HphI	GGTGA	2 cut(s)	160, 827
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	6 cut(s)	70, 207, 256, 272, 468, 556
Hpy188III	TCNNGA	3 cut(s)	486, 590, 849
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	2 cut(s)	596, 599
HpyAV	CCTTC	6 cut(s)	48, 244, 270, 563, 705, 840
HpyCH4III	ACNGT	3 cut(s)	79, 154, 385
HpyCH4IV	ACGT	2 cut(s)	477, 597
HpyCH4V	TGCA	4 cut(s)	98, 189, 305, 668
HpyF10VI	GCNNNNNNNGC	7 cut(s)	200, 209, 674, 794, 806, 818, 823
HpyF3I	CTNAG	5 cut(s)	18, 206, 423, 457, 509
HpySE526I	ACGT	2 cut(s)	477, 597
Hsp92II	CATG	3 cut(s)	377, 442, 615
HspAI	GCGC	1 cut(s)	119
KspI	CCGCGG	1 cut(s)	801
Kzo9I	GATC	1 cut(s)	349
LguI	GCTCTTC	3 cut(s)	457, 596, 611
LmnI	GCTCC	1 cut(s)	488
Lsp1109I	GCAGC	3 cut(s)	317, 344, 796
LweI	GCATC	1 cut(s)	784
MaeI	CTAG	2 cut(s)	519, 813
MaeII	ACGT	2 cut(s)	477, 597
MaeIII	GTNAC	2 cut(s)	88, 148
MalI	GATC	1 cut(s)	351
MbiI	CCGCTC	1 cut(s)	606
MboI	GATC	1 cut(s)	349
MboII	GAAGA	7 cut(s)	139, 255, 444, 569, 613, 628, 853
MhlI	GDGCHC	2 cut(s)	24, 214
MluCI	AATT	5 cut(s)	397, 580, 635, 854, 893
MlyI	GAGTC	1 cut(s)	757
MmeI	TCCRAC	3 cut(s)	33, 48, 446
MroXI	GAANNNNTTC	1 cut(s)	731
MseI	TTAA	4 cut(s)	161, 345, 474, 579
MspA1I	CMGCKG	2 cut(s)	335, 800
MspR9I	CCNGG	2 cut(s)	286, 741
Mva1269I	GAATGC	1 cut(s)	275
MvaI	CCWGG	2 cut(s)	286, 741
MvnI	CGCG	1 cut(s)	800
MwoI	GCNNNNNNNGC	7 cut(s)	200, 209, 674, 794, 806, 818, 823
NdeII	GATC	1 cut(s)	349
NlaIII	CATG	3 cut(s)	377, 442, 615
NlaIV	GGNNCC	2 cut(s)	258, 409
NmuCI	GTSAC	1 cut(s)	148
NspI	RCATGY	1 cut(s)	377
PciSI	GCTCTTC	3 cut(s)	457, 596, 611
PctI	GAATGC	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	731
PfeI	GAWTC	2 cut(s)	469, 841
PflMI	CCANNNNNTGG	1 cut(s)	60
PkrI	GCNGC	5 cut(s)	307, 334, 608, 799, 811
PleI	GAGTC	1 cut(s)	757
PpsI	GAGTC	1 cut(s)	757
Psp124BI	GAGCTC	1 cut(s)	24
Psp1406I	AACGTT	1 cut(s)	477
Psp6I	CCWGG	2 cut(s)	284, 739
PspGI	CCWGG	2 cut(s)	284, 739
PspN4I	GGNNCC	2 cut(s)	258, 409
PspPI	GGNCC	4 cut(s)	256, 407, 427, 642
PvuII	CAGCTG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	24
SacII	CCGCGG	1 cut(s)	801
SapI	GCTCTTC	3 cut(s)	457, 596, 611
SaqAI	TTAA	4 cut(s)	161, 345, 474, 579
SatI	GCNGC	5 cut(s)	306, 333, 607, 798, 810
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	4 cut(s)	256, 407, 427, 642
SchI	GAGTC	1 cut(s)	757
ScrFI	CCNGG	2 cut(s)	286, 741
SduI	GDGCHC	2 cut(s)	24, 214
SfaNI	GCATC	1 cut(s)	784
Sfr303I	CCGCGG	1 cut(s)	801
SgrBI	CCGCGG	1 cut(s)	801
SinI	GGWCC	3 cut(s)	256, 407, 642
Sse9I	AATT	5 cut(s)	397, 580, 635, 854, 893
SsiI	CCGC	6 cut(s)	137, 377, 606, 786, 798, 800
SspMI	CTAG	2 cut(s)	519, 813
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	2 cut(s)	284, 739
StyI	CCWWGG	2 cut(s)	214, 309
TaaI	ACNGT	3 cut(s)	79, 154, 385
TaiI	ACGT	2 cut(s)	480, 600
TaqI	TCGA	2 cut(s)	246, 591
TaqII	GACCGA	1 cut(s)	659
TasI	AATT	5 cut(s)	397, 580, 635, 854, 893
TauI	GCSGC	2 cut(s)	609, 800
TfiI	GAWTC	2 cut(s)	469, 841
Tru1I	TTAA	4 cut(s)	161, 345, 474, 579
Tru9I	TTAA	4 cut(s)	161, 345, 474, 579
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	3 cut(s)	305, 332, 809
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	3 cut(s)	372, 404, 551
TspRI	CASTG	1 cut(s)	390
Van91I	CCANNNNNTGG	1 cut(s)	60
VpaK11BI	GGWCC	3 cut(s)	256, 407, 642
XapI	RAATTY	1 cut(s)	854
XceI	RCATGY	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	2 cut(s)	57, 845
XmnI	GAANNNNTTC	1 cut(s)	731
XspI	CTAG	2 cut(s)	519, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.