FvH4_7g25260

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008576
Physical Location & Seq
Reverse (-)
19294880 .. 19297973
3094 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25260.t4

Sequence Viewer

Length: 792 bp
ATGGCGGAGTTGGGACTGAAAGTGATCTTAACAGCCAGAGACAGTGAAAGGGGTTGCAAGGCAGTTGAAGCACTTAGGGCTCAAGGTCTTCATAGTATTACCTTTTATCGCCTCGATGTTTCTGATCCTTGTTCCATCAACACCTTCGCTTCCTGGTTCAAAGAAAACTTTACAGCCTTGGATATTCTTGTGAACAACGCAGCAGTTTCGTTCAACGAAATCAATGAAAATTCAGTGGAACATGCCGAGACCGTAATCAGAACCAATTTCAATGGACCAAAGTTACTGACTGAGGCTCTCTTGCCCATGTTCCGTACCTCCTCCATGAGTCGAATACTCAATGTCAGCTCCAGACTTGGTTCCCTGAATAAGGTGGGAAACCCTAGCATAAAACAGGTTCTTGAAAGCGAGAAACTATCGGAGGACGATATTGAGGGAATTGTTAGCTTGTTTCTGGAACAAGTGAAGACCGGGACATGGAAGACCGGAGGTTGGCCTGAACTGTGGACGGACTATGCGGTTTCAAAGCTTGCACTGAATGCATACACTAGGGTTTTGGCAAAGCGCTACGAAGGAAGAGCTTTGAGCGTGAATAGCTTCTGTCCCGGCTTCACTCAGACATCGATGACCGGATGCAAGGGAGATCACACCGCGGACGAAGTCGCTATCCTTGCTGCTAGGCTGGCTTTGCTTCCGCCGGACAATATACAAAGTGGGAAGTTTTTTCTATGGGGTATTAGCAGTGGAAGTAGTACCAGTAATAATACTTTGGTGGTTTCCTCCAAGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

264

Amino Acids

28.76

Weight (kDa)

6.34

Isoelectric Point (pI)

29.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 1 - 122 4.4e-20 short chain dehydrogenase
adh_short_C2 PF13561 1 - 118 3.1e-15 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 165 - 212 7.7e-06 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 168 - 211 2.6e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 653
AciI CCGC 5 cut(s) 5, 518, 651, 653, 695
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 1 cut(s) 229
AfaI GTAC 2 cut(s) 316, 754
AfeI AGCGCT 1 cut(s) 566
AfiI CCNNNNNNNGG 3 cut(s) 370, 477, 492
AgsI TTSAA 6 cut(s) 68, 160, 214, 271, 404, 525
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 5 cut(s) 348, 447, 529, 581, 597
AluI AGCT 5 cut(s) 348, 447, 529, 581, 597
Alw26I GTCTC 2 cut(s) 33, 242
AlwI GGATC 1 cut(s) 119
Aor51HI AGCGCT 1 cut(s) 566
AoxI GGCC 1 cut(s) 494
ApeKI GCWGC 2 cut(s) 200, 674
ApoI RAATTY 1 cut(s) 229
Asp700I GAANNNNTTC 1 cut(s) 596
AspLEI GCGC 1 cut(s) 567
AspS9I GGNCC 1 cut(s) 275
AsuC2I CCSGG 2 cut(s) 472, 606
AvaII GGWCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 82
BbsI GAAGAC 3 cut(s) 80, 473, 488
BbvI GCAGC 2 cut(s) 212, 661
BccI CCATC 1 cut(s) 143
BcgI CGANNNNNNTGC 2 cut(s) 189, 223
BciT130I CCWGG 1 cut(s) 154
BcnI CCSGG 2 cut(s) 472, 606
BcoDI GTCTC 2 cut(s) 33, 242
BfaI CTAG 3 cut(s) 384, 549, 678
BfoI RGCGCY 1 cut(s) 568
BisI GCNGC 2 cut(s) 201, 675
BlsI GCNGC 2 cut(s) 202, 676
Bme1390I CCNGG 3 cut(s) 154, 472, 606
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 3 cut(s) 154, 472, 606
BmsI GCATC 1 cut(s) 623
BpiI GAAGAC 3 cut(s) 80, 473, 488
BpmI CTGGAG 1 cut(s) 334
BpuEI CTTGAG 1 cut(s) 66
BpuMI CCSGG 2 cut(s) 472, 606
Bsa29I ATCGAT 1 cut(s) 623
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 177, 651
BsaWI WCCGGW 2 cut(s) 485, 629
Bsc4I CCNNNNNNNGG 3 cut(s) 370, 477, 492
Bse1I ACTGG 1 cut(s) 756
BseBI CCWGG 1 cut(s) 154
BseCI ATCGAT 1 cut(s) 623
BseDI CCNNGG 2 cut(s) 177, 651
BseGI GGATG 1 cut(s) 638
BseLI CCNNNNNNNGG 3 cut(s) 370, 477, 492
BseMII CTCAG 2 cut(s) 282, 629
BseNI ACTGG 1 cut(s) 756
BseRI GAGGAG 1 cut(s) 310
BseXI GCAGC 2 cut(s) 212, 661
Bsh1236I CGCG 1 cut(s) 653
BshFI GGCC 1 cut(s) 496
BshVI ATCGAT 1 cut(s) 623
BsiSI CCGG 5 cut(s) 471, 486, 606, 630, 698
BslFI GGGAC 3 cut(s) 27, 487, 588
BslI CCNNNNNNNGG 3 cut(s) 370, 477, 492
BsmAI GTCTC 2 cut(s) 33, 242
BsmFI GGGAC 3 cut(s) 27, 487, 588
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 1 cut(s) 496
Bso31I GGTCTC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 3 cut(s) 24, 124, 643
BspACI CCGC 5 cut(s) 5, 518, 651, 653, 695
BspANI GGCC 1 cut(s) 496
BspCNI CTCAG 2 cut(s) 283, 628
BspDI ATCGAT 1 cut(s) 623
BspFNI CGCG 1 cut(s) 653
BspLI GGNNCC 1 cut(s) 361
BspPI GGATC 1 cut(s) 119
BspQI GCTCTTC 1 cut(s) 571
BspTNI GGTCTC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 756
BssECI CCNNGG 2 cut(s) 177, 651
BssMI GATC 3 cut(s) 24, 124, 643
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 3 cut(s) 44, 253, 504
Bst6I CTCTTC 1 cut(s) 571
BstAPI GCANNNNNTGC 1 cut(s) 539
BstC8I GCNNGC 2 cut(s) 531, 684
BstDEI CTNAG 3 cut(s) 74, 291, 615
BstDSI CCRYGG 1 cut(s) 651
BstENI CCTNNNNNAGG 1 cut(s) 368
BstF5I GGATG 1 cut(s) 638
BstFNI CGCG 1 cut(s) 653
BstH2I RGCGCY 1 cut(s) 568
BstHHI GCGC 1 cut(s) 567
BstKTI GATC 3 cut(s) 27, 127, 646
BstMAI GTCTC 2 cut(s) 33, 242
BstMBI GATC 3 cut(s) 24, 124, 643
BstMWI GCNNNNNNNGC 7 cut(s) 68, 77, 539, 594, 671, 683, 688
BstNI CCWGG 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 3 cut(s) 152, 470, 604
BstUI CGCG 1 cut(s) 653
BstV1I GCAGC 2 cut(s) 212, 661
BstV2I GAAGAC 3 cut(s) 80, 473, 488
Bsu15I ATCGAT 1 cut(s) 623
BsuRI GGCC 1 cut(s) 496
BsuTUI ATCGAT 1 cut(s) 623
BtgI CCRYGG 1 cut(s) 651
BtsCI GGATG 1 cut(s) 638
BtsI GCAGTG 1 cut(s) 748
BtsIMutI CAGTG 4 cut(s) 49, 240, 533, 748
Cac8I GCNNGC 2 cut(s) 531, 684
CfoI GCGC 1 cut(s) 567
Cfr13I GGNCC 1 cut(s) 275
Cfr42I CCGCGG 1 cut(s) 654
ClaI ATCGAT 1 cut(s) 623
Csp6I GTAC 2 cut(s) 315, 753
CviAII CATG 4 cut(s) 242, 307, 325, 477
CviQI GTAC 2 cut(s) 315, 753
DdeI CTNAG 3 cut(s) 74, 291, 615
DpnI GATC 3 cut(s) 26, 126, 645
DpnII GATC 3 cut(s) 24, 124, 643
Eam1104I CTCTTC 1 cut(s) 571
EarI CTCTTC 1 cut(s) 571
EciI GGCGGA 2 cut(s) 20, 684
Eco130I CCWWGG 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 275
Eco47III AGCGCT 1 cut(s) 566
EcoNI CCTNNNNNAGG 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 544
EcoT38I GRGCYC 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 4 cut(s) 245, 310, 328, 480
FaqI GGGAC 3 cut(s) 27, 487, 588
FatI CATG 4 cut(s) 241, 306, 324, 476
Fnu4HI GCNGC 2 cut(s) 201, 675
FokI GGATG 1 cut(s) 645
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 2 cut(s) 201, 675
FspBI CTAG 3 cut(s) 384, 549, 678
GlaI GCGC 1 cut(s) 566
GluI GCNGC 2 cut(s) 201, 675
GsuI CTGGAG 1 cut(s) 334
HaeII RGCGCY 1 cut(s) 568
HaeIII GGCC 1 cut(s) 496
HapII CCGG 5 cut(s) 471, 486, 606, 630, 698
HhaI GCGC 1 cut(s) 567
Hin1II CATG 4 cut(s) 245, 310, 328, 480
Hin6I GCGC 1 cut(s) 565
HinP1I GCGC 1 cut(s) 565
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 1 cut(s) 328
HpaII CCGG 5 cut(s) 471, 486, 606, 630, 698
Hpy166II GTNNAC 2 cut(s) 193, 507
Hpy188I TCNGA 4 cut(s) 124, 260, 421, 618
Hpy188III TCNNGA 3 cut(s) 351, 401, 455
Hpy8I GTNNAC 2 cut(s) 193, 507
HpyAV CCTTC 2 cut(s) 154, 566
HpyCH4III ACNGT 3 cut(s) 44, 253, 504
HpyCH4V TGCA 4 cut(s) 57, 533, 542, 636
HpyF10VI GCNNNNNNNGC 7 cut(s) 68, 77, 539, 594, 671, 683, 688
HpyF3I CTNAG 3 cut(s) 74, 291, 615
Hsp92II CATG 4 cut(s) 245, 310, 328, 480
HspAI GCGC 1 cut(s) 565
KspI CCGCGG 1 cut(s) 654
Kzo9I GATC 3 cut(s) 24, 124, 643
LguI GCTCTTC 1 cut(s) 571
LmnI GCTCC 1 cut(s) 353
Lsp1109I GCAGC 2 cut(s) 212, 661
LweI GCATC 1 cut(s) 623
MaeI CTAG 3 cut(s) 384, 549, 678
MaeIII GTNAC 1 cut(s) 282
MalI GATC 3 cut(s) 26, 126, 645
MboI GATC 3 cut(s) 24, 124, 643
MboII GAAGA 4 cut(s) 80, 478, 493, 588
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 3 cut(s) 229, 265, 438
MlyI GAGTC 1 cut(s) 337
MnlI CCTC 8 cut(s) 122, 286, 328, 331, 415, 427, 482, 790
Mph1103I ATGCAT 1 cut(s) 544
MroXI GAANNNNTTC 1 cut(s) 596
MseI TTAA 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 5 cut(s) 471, 486, 606, 630, 698
MspR9I CCNGG 3 cut(s) 154, 472, 606
Mva1269I GAATGC 1 cut(s) 544
MvaI CCWGG 1 cut(s) 154
MvnI CGCG 1 cut(s) 653
MwoI GCNNNNNNNGC 7 cut(s) 68, 77, 539, 594, 671, 683, 688
NciI CCSGG 2 cut(s) 472, 606
NdeII GATC 3 cut(s) 24, 124, 643
NlaIII CATG 4 cut(s) 245, 310, 328, 480
NlaIV GGNNCC 1 cut(s) 361
NmeAIII GCCGAG 1 cut(s) 271
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 1 cut(s) 245
PciSI GCTCTTC 1 cut(s) 571
PctI GAATGC 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 596
PflFI GACNNNGTC 1 cut(s) 659
PkrI GCNGC 2 cut(s) 202, 676
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 152
PspGI CCWGG 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 1 cut(s) 275
PsyI GACNNNGTC 1 cut(s) 659
RsaI GTAC 2 cut(s) 316, 754
RsaNI GTAC 2 cut(s) 315, 753
SacII CCGCGG 1 cut(s) 654
SapI GCTCTTC 1 cut(s) 571
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 2 cut(s) 201, 675
Sau3AI GATC 3 cut(s) 24, 124, 643
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 3 cut(s) 154, 472, 606
SduI GDGCHC 1 cut(s) 82
SfaNI GCATC 1 cut(s) 623
Sfr303I CCGCGG 1 cut(s) 654
SgrBI CCGCGG 1 cut(s) 654
SinI GGWCC 1 cut(s) 275
SmlI CTYRAG 1 cut(s) 81
SmoI CTYRAG 1 cut(s) 81
Sse9I AATT 3 cut(s) 229, 265, 438
SsiI CCGC 5 cut(s) 5, 518, 651, 653, 695
SspMI CTAG 3 cut(s) 384, 549, 678
StyD4I CCNGG 3 cut(s) 152, 470, 604
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 3 cut(s) 44, 253, 504
TaqI TCGA 3 cut(s) 114, 331, 623
TasI AATT 3 cut(s) 229, 265, 438
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 4 cut(s) 49, 240, 540, 748
TseI GCWGC 2 cut(s) 200, 674
TspDTI ATGAA 2 cut(s) 80, 240
TspGWI ACGGA 2 cut(s) 302, 524
TspRI CASTG 4 cut(s) 49, 240, 540, 748
Tth111I GACNNNGTC 1 cut(s) 659
VpaK11BI GGWCC 1 cut(s) 275
XagI CCTNNNNNAGG 1 cut(s) 368
XapI RAATTY 1 cut(s) 229
XceI RCATGY 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 596
XspI CTAG 3 cut(s) 384, 549, 678
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.