Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008576

Physical Location & Seq

Genomic Coordinates Forward (+)

21613328 .. 21616928

Gene Structure 3601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG128500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCGGAGTTGGGACTGAAGGTGATATTAACAGCCAGAGACATTGAAAGGGGTTGCAAGGCTGTTGAAGCACTTAGGGCTCAAGGTCTTCATAATATTACCTTTTTCTGCCTCGATGTTTCTGATCCTTGTTCTATCAAAACTTTCTCATCATGGTTCACCGAAAACTTTGCAGCCTTGGATATTCTTGTGAACAACGCAGCAGTTTCGTTCAACGAAATCAATGAAAACACAGTGGAACATGCGGAGACAGTAATCAAAACCAATTTCAATGGACCAAAGTTACTGACTGAGGCTCTCTTGCCCATGTTCCGTACCTCATCCATTAGTCGAATACTCAATCTCAGCTCTAGACTTGGTTCCCTAAATAAAGTGGGAAACCCTAGCATAAAAGAGGTTCTAGAAAGCGAGAAACTATCAGAGGATGATATCGAGGCAGTTGTTAGCTTGTTTCTGGAACAAGTGAAGACCGGGACATGGAAGACCGGAGGTTGGCCTGAATTGTGGACGGACTATGCGGTGTCGAAGCTTGCACTGAATGCATACACCAGGGTTTTGGCAAAGCGCTACGAAGGAAGTTTGAGTGTAAATAGCTTCTGTCCCGGCTTTACTCAGACCTCGATGACTCGGTGCAAAGGAGATCACACCGCTGATGATGCGGCCATTGTCGGCGCTAGGCTGGCCTTGCTTCCTCCGGACAAGATACAGAGTGGAAAATTTTTTCTATGGGGTAGTCGCAGTAATAATAATGTGGTGGTATCCTCCAAGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204

Pfam Domains

Protein Families

adh_short

Protein Analysis

257

Amino Acids

28.23

Weight (kDa)

6.34

Isoelectric Point (pI)

30.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	1 - 122	1.7e-18	short chain dehydrogenase
adh_short_C2	PF13561	1 - 118	2.9e-14	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008576)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59710 AT3G59710 AT3G59710
fragaria_vesca	FvH4_4g10060 FvH4_7g25260 FvH4_7g25260 FvH4_7g25260 FvH4_7g25260 FvH4_7g25260
malus_domestica	MD02G1258700.v1.1 MD07G1062100.v1.1
prunus_persica	Prupe.1G102900_v2.0.a1
pyrus_communis	pycom02g21990
rosa_chinensis	RchiOBHm_Chr4g0405731
rosa_laevigata	RLG00000008824
rosa_multiflora	Rmu_sc0001200.1_g000020
rosa_roxburghii	Rroxscaffold_5G00350230
rosa_rugosa	Rorug04G0062000
rosa_samantha	Rh4AG133500 Rh4BG128500 Rh4CG141300 Rh4DG128100
rosa_wichuraiana	Rw4G010870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	772
AccIII	TCCGGA	1 cut(s)	694
AciI	CCGC	5 cut(s)	5, 245, 518, 648, 659
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	660
AcsI	RAATTY	1 cut(s)	716
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	316
AfeI	AGCGCT	1 cut(s)	566
AfiI	CCNNNNNNNGG	2 cut(s)	477, 492
AgsI	TTSAA	4 cut(s)	47, 68, 214, 271
AjnI	CCWGG	1 cut(s)	548
AluBI	AGCT	4 cut(s)	348, 447, 529, 594
AluI	AGCT	4 cut(s)	348, 447, 529, 594
Alw26I	GTCTC	2 cut(s)	33, 242
AlwI	GGATC	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	694
Aor51HI	AGCGCT	1 cut(s)	566
AoxI	GGCC	3 cut(s)	494, 660, 681
ApeKI	GCWGC	2 cut(s)	173, 200
ApoI	RAATTY	1 cut(s)	716
AspLEI	GCGC	2 cut(s)	567, 674
AspS9I	GGNCC	1 cut(s)	275
AsuC2I	CCSGG	2 cut(s)	472, 603
AsuHPI	GGTGA	2 cut(s)	34, 151
AvaII	GGWCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	82
BbsI	GAAGAC	3 cut(s)	80, 473, 488
BbvI	GCAGC	2 cut(s)	185, 212
BcgI	CGANNNNNNTGC	4 cut(s)	152, 186, 189, 223
BciT130I	CCWGG	1 cut(s)	550
BciVI	GTATCC	1 cut(s)	769
BcnI	CCSGG	2 cut(s)	472, 603
BcoDI	GTCTC	2 cut(s)	33, 242
BfaI	CTAG	4 cut(s)	351, 384, 401, 675
BfoI	RGCGCY	2 cut(s)	568, 675
BfuI	GTATCC	1 cut(s)	769
BisI	GCNGC	3 cut(s)	174, 201, 660
BlsI	GCNGC	3 cut(s)	175, 202, 661
Bme1390I	CCNGG	3 cut(s)	472, 550, 603
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	3 cut(s)	472, 550, 603
BmsI	GCATC	1 cut(s)	646
BpiI	GAAGAC	3 cut(s)	80, 473, 488
BpuEI	CTTGAG	1 cut(s)	66
BpuMI	CCSGG	2 cut(s)	472, 603
BsaJI	CCNNGG	2 cut(s)	177, 549
BsaWI	WCCGGW	2 cut(s)	485, 694
Bsc4I	CCNNNNNNNGG	2 cut(s)	477, 492
BseAI	TCCGGA	1 cut(s)	694
BseBI	CCWGG	1 cut(s)	550
BseDI	CCNNGG	2 cut(s)	177, 549
BseGI	GGATG	2 cut(s)	320, 430
BseLI	CCNNNNNNNGG	2 cut(s)	477, 492
BseMII	CTCAG	3 cut(s)	282, 358, 626
BseXI	GCAGC	2 cut(s)	185, 212
BshFI	GGCC	3 cut(s)	496, 662, 683
BsiSI	CCGG	4 cut(s)	471, 486, 603, 695
BslFI	GGGAC	3 cut(s)	27, 487, 585
BslI	CCNNNNNNNGG	2 cut(s)	477, 492
BsmAI	GTCTC	2 cut(s)	33, 242
BsmFI	GGGAC	3 cut(s)	27, 487, 585
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	3 cut(s)	496, 662, 683
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp13I	TCCGGA	1 cut(s)	694
Bsp143I	GATC	2 cut(s)	124, 640
BspACI	CCGC	5 cut(s)	5, 245, 518, 648, 659
BspANI	GGCC	3 cut(s)	496, 662, 683
BspCNI	CTCAG	3 cut(s)	283, 357, 625
BspEI	TCCGGA	1 cut(s)	694
BspLI	GGNNCC	1 cut(s)	361
BspPI	GGATC	1 cut(s)	119
BssECI	CCNNGG	2 cut(s)	177, 549
BssMI	GATC	2 cut(s)	124, 640
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	2 cut(s)	235, 253
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	531, 681
BstDEI	CTNAG	4 cut(s)	74, 291, 344, 612
BstF5I	GGATG	2 cut(s)	320, 430
BstH2I	RGCGCY	2 cut(s)	568, 675
BstHHI	GCGC	2 cut(s)	567, 674
BstKTI	GATC	2 cut(s)	127, 643
BstMAI	GTCTC	2 cut(s)	33, 242
BstMBI	GATC	2 cut(s)	124, 640
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 77, 539, 656, 680, 685
BstNI	CCWGG	1 cut(s)	550
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	3 cut(s)	470, 548, 601
BstV1I	GCAGC	2 cut(s)	185, 212
BstV2I	GAAGAC	3 cut(s)	80, 473, 488
BstXI	CCANNNNNNTGG	1 cut(s)	556
BsuI	GTATCC	1 cut(s)	769
BsuRI	GGCC	3 cut(s)	496, 662, 683
BtsCI	GGATG	2 cut(s)	320, 430
BtsIMutI	CAGTG	2 cut(s)	240, 533
Cac8I	GCNNGC	2 cut(s)	531, 681
CfoI	GCGC	2 cut(s)	567, 674
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	4 cut(s)	153, 242, 307, 477
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	4 cut(s)	74, 291, 344, 612
DpnI	GATC	2 cut(s)	126, 642
DpnII	GATC	2 cut(s)	124, 640
EaeI	YGGCCR	1 cut(s)	660
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	82
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	275
Eco47III	AGCGCT	1 cut(s)	566
Eco57I	CTGAAG	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	548
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	4 cut(s)	156, 245, 310, 480
FaqI	GGGAC	3 cut(s)	27, 487, 585
FatI	CATG	4 cut(s)	152, 241, 306, 476
Fnu4HI	GCNGC	3 cut(s)	174, 201, 660
FokI	GGATG	2 cut(s)	307, 437
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	3 cut(s)	174, 201, 660
FspBI	CTAG	4 cut(s)	351, 384, 401, 675
GlaI	GCGC	2 cut(s)	566, 673
GluI	GCNGC	3 cut(s)	174, 201, 660
HaeII	RGCGCY	2 cut(s)	568, 675
HaeIII	GGCC	3 cut(s)	496, 662, 683
HapII	CCGG	4 cut(s)	471, 486, 603, 695
HhaI	GCGC	2 cut(s)	567, 674
Hin1II	CATG	4 cut(s)	156, 245, 310, 480
Hin6I	GCGC	2 cut(s)	565, 672
HinP1I	GCGC	2 cut(s)	565, 672
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	1 cut(s)	625
HpaII	CCGG	4 cut(s)	471, 486, 603, 695
HphI	GGTGA	2 cut(s)	34, 151
Hpy166II	GTNNAC	3 cut(s)	159, 193, 507
Hpy188I	TCNGA	3 cut(s)	124, 421, 615
Hpy188III	TCNNGA	4 cut(s)	351, 401, 455, 695
Hpy8I	GTNNAC	3 cut(s)	159, 193, 507
HpyAV	CCTTC	2 cut(s)	13, 566
HpyCH4III	ACNGT	2 cut(s)	235, 253
HpyCH4V	TGCA	5 cut(s)	57, 173, 533, 542, 633
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 77, 539, 656, 680, 685
HpyF3I	CTNAG	4 cut(s)	74, 291, 344, 612
Hsp92II	CATG	4 cut(s)	156, 245, 310, 480
HspAI	GCGC	2 cut(s)	565, 672
Kpn2I	TCCGGA	1 cut(s)	694
Kzo9I	GATC	2 cut(s)	124, 640
Lsp1109I	GCAGC	2 cut(s)	185, 212
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	4 cut(s)	351, 384, 401, 675
MaeIII	GTNAC	1 cut(s)	282
MalI	GATC	2 cut(s)	126, 642
MboI	GATC	2 cut(s)	124, 640
MboII	GAAGA	3 cut(s)	80, 478, 493
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	3 cut(s)	265, 500, 716
MlyI	GAGTC	1 cut(s)	619
Mph1103I	ATGCAT	1 cut(s)	544
MroI	TCCGGA	1 cut(s)	694
MseI	TTAA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	4 cut(s)	471, 486, 603, 695
MspR9I	CCNGG	3 cut(s)	472, 550, 603
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	1 cut(s)	550
MwoI	GCNNNNNNNGC	6 cut(s)	68, 77, 539, 656, 680, 685
NciI	CCSGG	2 cut(s)	472, 603
NdeII	GATC	2 cut(s)	124, 640
NlaIII	CATG	4 cut(s)	156, 245, 310, 480
NlaIV	GGNNCC	1 cut(s)	361
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	1 cut(s)	245
PctI	GAATGC	1 cut(s)	544
PkrI	GCNGC	3 cut(s)	175, 202, 661
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
PsiI	TTATAA	1 cut(s)	772
Psp6I	CCWGG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	548
PspN4I	GGNNCC	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	275
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	3 cut(s)	174, 201, 660
Sau3AI	GATC	2 cut(s)	124, 640
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	3 cut(s)	472, 550, 603
SduI	GDGCHC	1 cut(s)	82
SfaNI	GCATC	1 cut(s)	646
SinI	GGWCC	1 cut(s)	275
SmlI	CTYRAG	1 cut(s)	81
SmoI	CTYRAG	1 cut(s)	81
Sse9I	AATT	3 cut(s)	265, 500, 716
SsiI	CCGC	5 cut(s)	5, 245, 518, 648, 659
SspI	AATATT	1 cut(s)	97
SspMI	CTAG	4 cut(s)	351, 384, 401, 675
StyD4I	CCNGG	3 cut(s)	470, 548, 601
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	235, 253
TaqI	TCGA	5 cut(s)	114, 331, 432, 524, 620
TasI	AATT	3 cut(s)	265, 500, 716
TauI	GCSGC	1 cut(s)	662
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	2 cut(s)	240, 540
TseI	GCWGC	2 cut(s)	173, 200
TspDTI	ATGAA	2 cut(s)	80, 240
TspGWI	ACGGA	2 cut(s)	302, 524
TspRI	CASTG	2 cut(s)	240, 540
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	1 cut(s)	716
XbaI	TCTAGA	2 cut(s)	350, 400
XceI	RCATGY	1 cut(s)	245
XspI	CTAG	4 cut(s)	351, 384, 401, 675
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.