Rh4CG141300

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0008576
Physical Location & Seq
Forward (+)
28058954 .. 28062853
3900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG141300.1

Sequence Viewer

Length: 879 bp
ATGAATGCACGAATCAGGTGGTGGTCGGAGGAGACAGTAGCGATAGTGACTGGAGCAAACAAAGGAATTGGGTTTGCGCTGGTGAAAAGAATGGCGGAGTTGGGACTGAAGGTGATATTAACAGCCAGAGACACTGAAAGGGGTTGCAAGGCTGTTGAAGCACTGAGGGCTCAAGGTCTTCATAATATTACCTTTTTCTGCCTCGATGTTTCTGATCCTTATTCTATCAAAACCTTCTCATCATGGTTCACAGAAAACTTTGCAGCCTTGGATATTCTTGTGAACAACGCAGCAGTTTCGTTCAACGAAATCAATCAAAACTCAGTGGAACATGCCAAGACAGTAATAAAAACCAATTTCAATGGACCAAAGTTACTGACTGAGGCTCTCTTGCCCATGTTCCGTACCTCATCCATTAGTCGAATACTCAATCTCAGCTCTAGACTTGGTTCCCTAAATAAAGTGGGAAACCCTAGCATTAAAGAGGTTCTAGAAAGCGAGAAACTATCAGAGGATGATATCGAAGCAGTTGTTAGCTTGTTTCTGGAACAAGTGAAGACCGGGACATGGAAGACCGGAGGTTGGCCTGAATTGTGGACGGACTATGCGGTGTCGAAGCTTGCACTGAATGCATACACCAGGGTTTTGGCAAAGCGCTACGAAGGAAGTTTGAGTGTGAATAGCTTCTGTCCCGGCTTTACTCAGACCTCGATGACTCGGTGCAAGGGAGATCACACCGCCGATGATGCGGCCATTGTCGGTGCTAGGCTGGCCTTGCTTCCTCCAGACAAGATACAGAGTGGAAAATTTTTTCTATGGGGTAGTAGCAGTAGTACTAGTACCAGTAATAATAATGTGGTGGTATCCTCCAAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

292

Amino Acids

32.01

Weight (kDa)

8.82

Isoelectric Point (pI)

30.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 13 - 152 3.5e-28 short chain dehydrogenase
KR PF08659 14 - 144 5.5e-08 KR domain
Epimerase PF01370 15 - 147 4e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 18 - 148 1.7e-19 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 877
AciI CCGC 4 cut(s) 95, 608, 738, 749
AclWI GGATC 1 cut(s) 209
AcoI YGGCCR 1 cut(s) 750
AcsI RAATTY 1 cut(s) 806
AcuI CTGAAG 1 cut(s) 128
AfaI GTAC 3 cut(s) 406, 835, 841
AfeI AGCGCT 1 cut(s) 656
AfiI CCNNNNNNNGG 2 cut(s) 567, 582
AgsI TTSAA 3 cut(s) 158, 304, 361
AhlI ACTAGT 1 cut(s) 836
AjnI CCWGG 1 cut(s) 638
AluBI AGCT 4 cut(s) 438, 537, 619, 684
AluI AGCT 4 cut(s) 438, 537, 619, 684
Alw26I GTCTC 2 cut(s) 26, 123
AlwI GGATC 1 cut(s) 209
Aor51HI AGCGCT 1 cut(s) 656
AoxI GGCC 3 cut(s) 584, 750, 771
ApeKI GCWGC 2 cut(s) 263, 290
ApoI RAATTY 1 cut(s) 806
Asp700I GAANNNNTTC 1 cut(s) 683
AspLEI GCGC 2 cut(s) 79, 657
AspS9I GGNCC 1 cut(s) 365
AsuC2I CCSGG 2 cut(s) 562, 693
AsuHPI GGTGA 2 cut(s) 94, 124
AvaII GGWCC 1 cut(s) 365
BanII GRGCYC 1 cut(s) 172
BbsI GAAGAC 3 cut(s) 170, 563, 578
BbvI GCAGC 2 cut(s) 275, 302
BcgI CGANNNNNNTGC 2 cut(s) 279, 313
BciT130I CCWGG 1 cut(s) 640
BciVI GTATCC 1 cut(s) 874
BcnI CCSGG 2 cut(s) 562, 693
BcoDI GTCTC 2 cut(s) 26, 123
BcuI ACTAGT 1 cut(s) 836
BfaI CTAG 5 cut(s) 441, 474, 491, 765, 837
BfoI RGCGCY 1 cut(s) 658
BfuI GTATCC 1 cut(s) 874
BisI GCNGC 3 cut(s) 264, 291, 750
BlsI GCNGC 3 cut(s) 265, 292, 751
BmcAI AGTACT 1 cut(s) 835
Bme1390I CCNGG 3 cut(s) 562, 640, 693
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 3 cut(s) 562, 640, 693
BmsI GCATC 1 cut(s) 736
BpiI GAAGAC 3 cut(s) 170, 563, 578
BpmI CTGGAG 2 cut(s) 72, 768
BpuEI CTTGAG 1 cut(s) 156
BpuMI CCSGG 2 cut(s) 562, 693
BsaJI CCNNGG 2 cut(s) 267, 639
BsaWI WCCGGW 1 cut(s) 575
Bsc4I CCNNNNNNNGG 2 cut(s) 567, 582
Bse1I ACTGG 2 cut(s) 55, 843
BseBI CCWGG 1 cut(s) 640
BseDI CCNNGG 2 cut(s) 267, 639
BseGI GGATG 2 cut(s) 410, 520
BseLI CCNNNNNNNGG 2 cut(s) 567, 582
BseMII CTCAG 5 cut(s) 155, 336, 372, 448, 716
BseNI ACTGG 2 cut(s) 55, 843
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 2 cut(s) 275, 302
BshFI GGCC 3 cut(s) 586, 752, 773
BsiSI CCGG 3 cut(s) 561, 576, 693
BslFI GGGAC 3 cut(s) 117, 577, 675
BslI CCNNNNNNNGG 2 cut(s) 567, 582
BsmAI GTCTC 2 cut(s) 26, 123
BsmFI GGGAC 3 cut(s) 117, 577, 675
BsmI GAATGC 2 cut(s) 10, 634
BsnI GGCC 3 cut(s) 586, 752, 773
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 2 cut(s) 214, 730
BspACI CCGC 4 cut(s) 95, 608, 738, 749
BspANI GGCC 3 cut(s) 586, 752, 773
BspCNI CTCAG 5 cut(s) 156, 335, 373, 447, 715
BspLI GGNNCC 1 cut(s) 451
BspPI GGATC 1 cut(s) 209
BsrI ACTGG 2 cut(s) 55, 843
BssECI CCNNGG 2 cut(s) 267, 639
BssMI GATC 2 cut(s) 214, 730
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 640
Bst4CI ACNGT 2 cut(s) 37, 343
BstAPI GCANNNNNTGC 1 cut(s) 629
BstC8I GCNNGC 2 cut(s) 621, 771
BstDEI CTNAG 5 cut(s) 164, 322, 381, 434, 702
BstF5I GGATG 2 cut(s) 410, 520
BstH2I RGCGCY 1 cut(s) 658
BstHHI GCGC 2 cut(s) 79, 657
BstKTI GATC 2 cut(s) 217, 733
BstMAI GTCTC 2 cut(s) 26, 123
BstMBI GATC 2 cut(s) 214, 730
BstMWI GCNNNNNNNGC 6 cut(s) 158, 167, 629, 746, 770, 775
BstNI CCWGG 1 cut(s) 640
BstNSI RCATGY 1 cut(s) 335
BstSCI CCNGG 3 cut(s) 560, 638, 691
BstV1I GCAGC 2 cut(s) 275, 302
BstV2I GAAGAC 3 cut(s) 170, 563, 578
BstXI CCANNNNNNTGG 1 cut(s) 646
BsuI GTATCC 1 cut(s) 874
BsuRI GGCC 3 cut(s) 586, 752, 773
BtsCI GGATG 2 cut(s) 410, 520
BtsIMutI CAGTG 4 cut(s) 132, 161, 330, 623
Cac8I GCNNGC 2 cut(s) 621, 771
CfoI GCGC 2 cut(s) 79, 657
Cfr13I GGNCC 1 cut(s) 365
Csp6I GTAC 3 cut(s) 405, 834, 840
CviAII CATG 4 cut(s) 243, 332, 397, 567
CviQI GTAC 3 cut(s) 405, 834, 840
DdeI CTNAG 5 cut(s) 164, 322, 381, 434, 702
DpnI GATC 2 cut(s) 216, 732
DpnII GATC 2 cut(s) 214, 730
EaeI YGGCCR 1 cut(s) 750
EciI GGCGGA 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 172
Eco32I GATATC 1 cut(s) 520
Eco47I GGWCC 1 cut(s) 365
Eco47III AGCGCT 1 cut(s) 656
Eco57I CTGAAG 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 638
EcoRV GATATC 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 634
EcoT38I GRGCYC 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 4 cut(s) 246, 335, 400, 570
FaiI YATR 9 cut(s) 183, 244, 333, 398, 568, 606, 634, 817, 877
FaqI GGGAC 3 cut(s) 117, 577, 675
FatI CATG 4 cut(s) 242, 331, 396, 566
Fnu4HI GCNGC 3 cut(s) 264, 291, 750
FokI GGATG 2 cut(s) 397, 527
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 3 cut(s) 264, 291, 750
FspBI CTAG 5 cut(s) 441, 474, 491, 765, 837
GlaI GCGC 2 cut(s) 78, 656
GluI GCNGC 3 cut(s) 264, 291, 750
GsuI CTGGAG 2 cut(s) 72, 768
HaeII RGCGCY 1 cut(s) 658
HaeIII GGCC 3 cut(s) 586, 752, 773
HapII CCGG 3 cut(s) 561, 576, 693
HhaI GCGC 2 cut(s) 79, 657
Hin1II CATG 4 cut(s) 246, 335, 400, 570
Hin6I GCGC 2 cut(s) 77, 655
HinP1I GCGC 2 cut(s) 77, 655
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 2 cut(s) 12, 715
HpaII CCGG 3 cut(s) 561, 576, 693
HphI GGTGA 2 cut(s) 94, 124
Hpy166II GTNNAC 3 cut(s) 249, 283, 597
Hpy188I TCNGA 4 cut(s) 28, 214, 511, 705
Hpy188III TCNNGA 4 cut(s) 441, 491, 545, 785
Hpy8I GTNNAC 3 cut(s) 249, 283, 597
HpyAV CCTTC 3 cut(s) 103, 244, 656
HpyCH4III ACNGT 2 cut(s) 37, 343
HpyCH4V TGCA 6 cut(s) 8, 147, 263, 623, 632, 723
HpyF10VI GCNNNNNNNGC 6 cut(s) 158, 167, 629, 746, 770, 775
HpyF3I CTNAG 5 cut(s) 164, 322, 381, 434, 702
Hsp92II CATG 4 cut(s) 246, 335, 400, 570
HspAI GCGC 2 cut(s) 77, 655
Kzo9I GATC 2 cut(s) 214, 730
LmnI GCTCC 1 cut(s) 53
Lsp1109I GCAGC 2 cut(s) 275, 302
LweI GCATC 1 cut(s) 736
MaeI CTAG 5 cut(s) 441, 474, 491, 765, 837
MaeIII GTNAC 2 cut(s) 46, 372
MalI GATC 2 cut(s) 216, 732
MboI GATC 2 cut(s) 214, 730
MboII GAAGA 3 cut(s) 170, 568, 583
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 4 cut(s) 66, 355, 590, 806
MlyI GAGTC 1 cut(s) 709
MmeI TCCRAC 1 cut(s) 6
Mph1103I ATGCAT 1 cut(s) 634
MroXI GAANNNNTTC 1 cut(s) 683
MseI TTAA 2 cut(s) 119, 480
MspI CCGG 3 cut(s) 561, 576, 693
MspR9I CCNGG 3 cut(s) 562, 640, 693
Mva1269I GAATGC 2 cut(s) 10, 634
MvaI CCWGG 1 cut(s) 640
MwoI GCNNNNNNNGC 6 cut(s) 158, 167, 629, 746, 770, 775
NciI CCSGG 2 cut(s) 562, 693
NdeII GATC 2 cut(s) 214, 730
NlaIII CATG 4 cut(s) 246, 335, 400, 570
NlaIV GGNNCC 1 cut(s) 451
NmuCI GTSAC 1 cut(s) 46
NsiI ATGCAT 1 cut(s) 634
NspI RCATGY 1 cut(s) 335
PctI GAATGC 2 cut(s) 10, 634
PdmI GAANNNNTTC 1 cut(s) 683
PfeI GAWTC 1 cut(s) 12
PkrI GCNGC 3 cut(s) 265, 292, 751
PleI GAGTC 1 cut(s) 709
PpsI GAGTC 1 cut(s) 709
PsiI TTATAA 1 cut(s) 877
Psp6I CCWGG 1 cut(s) 638
PspGI CCWGG 1 cut(s) 638
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 1 cut(s) 365
RsaI GTAC 3 cut(s) 406, 835, 841
RsaNI GTAC 3 cut(s) 405, 834, 840
SaqAI TTAA 2 cut(s) 119, 480
SatI GCNGC 3 cut(s) 264, 291, 750
Sau3AI GATC 2 cut(s) 214, 730
Sau96I GGNCC 1 cut(s) 365
ScaI AGTACT 1 cut(s) 835
SchI GAGTC 1 cut(s) 709
ScrFI CCNGG 3 cut(s) 562, 640, 693
SduI GDGCHC 1 cut(s) 172
SfaNI GCATC 1 cut(s) 736
SinI GGWCC 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
SpeI ACTAGT 1 cut(s) 836
Sse9I AATT 4 cut(s) 66, 355, 590, 806
SsiI CCGC 4 cut(s) 95, 608, 738, 749
SspI AATATT 1 cut(s) 187
SspMI CTAG 5 cut(s) 441, 474, 491, 765, 837
StyD4I CCNGG 3 cut(s) 560, 638, 691
StyI CCWWGG 1 cut(s) 267
TaaI ACNGT 2 cut(s) 37, 343
TaqI TCGA 5 cut(s) 204, 421, 522, 614, 710
TasI AATT 4 cut(s) 66, 355, 590, 806
TatI WGTACW 1 cut(s) 833
TauI GCSGC 1 cut(s) 752
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 2 cut(s) 119, 480
Tru9I TTAA 2 cut(s) 119, 480
TscAI CASTG 4 cut(s) 139, 168, 330, 630
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 2 cut(s) 263, 290
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 2 cut(s) 17, 170
TspGWI ACGGA 2 cut(s) 392, 614
TspRI CASTG 4 cut(s) 139, 168, 330, 630
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 806
XbaI TCTAGA 2 cut(s) 440, 490
XceI RCATGY 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 683
XspI CTAG 5 cut(s) 441, 474, 491, 765, 837
ZrmI AGTACT 1 cut(s) 835
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.