pycom02g21990

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0008576
Physical Location & Seq
Forward (+)
20126812 .. 20130335
3524 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g21990.1

Sequence Viewer

Length: 918 bp
ATGGAGTCCAAAGAAGCAACTTTCTCTTCTCATTCTCCTTCCCTCTTCCCAACCCCAACCACCAGATGGTGGTCAGAGGACACGGTGGCGATAGTGACCGGAGCAAACAAGGGAATAGGGTTTGCAGTTGTGAAGTGGATGGCGGAGTTGGGAGTGACGGTGATATTAACAGCCAGAGACAAGGAAAGGGGTTGCAAGGCTGTTGAGGCACTCAGAGCTCAAGGTCTTCATAATGTAGCCTTCTCTTGCCTTGATGTCTCCGATCCTTCTTCTATCAAATCTTTCACTTCATGGTTCAAAAAAAGCTATGCGGTGCTGGATATTCTTGTGAACAATGCAGCTGTGTCTTTTAATGATATCAATGAAAACTCTGTGGAACATGCCGAGACAGTGATGAAAACCAACTTCTACGGACCTAAGTTACTGACTGATGCCCTCTTGCCCATGTTCCTTCATAGCACCTCCTCCATTGGTCGGATACTTAACGTTAGCTCCAGACTCGGCTCACTAAATAAGCTAAGAAACCCTAGCACAAAACAAGTTCTAGAAAGCGAAACACTGTCGGAAAAAGATATCGAGGGGGTGGCTAGTTTGTTTCTTGAAGACGTCAAGAGCGGCAGATGGAAGAGTCAAGGGTGGCCTGAAGTATGGACCGACTATGCTGTGTCAAAGCTTGCACTCAATTCATACACAAGAGTTTTGGCCAAGCGATATGAGGGGAGGGGTATGAGTGTGAATAGCTTCTGTCCGGGCTTCACGCAGACATCTATGACTCGTTTTAAGGGCGACCACACAGCCGATGATGCTGCCAGTGTTTGCGTAAGGCTGGCATTGCTTCCTCCTGAGGAGATTCCAACGGGGAAATTTTTTTTGTGGGTTAGTACCGGTAGTGGTAATGTCATACCCTCTAAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

306

Amino Acids

33.49

Weight (kDa)

8.27

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 29 - 169 2.1e-28 short chain dehydrogenase
KR PF08659 30 - 161 1.2e-09 KR domain
adh_short_C2 PF13561 34 - 166 1.6e-20 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 211 - 262 3.2e-07 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 216 - 261 2.7e-07 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 609
AccB7I CCANNNNNTGG 2 cut(s) 66, 69
AccBSI CCGCTC 1 cut(s) 615
AciI CCGC 3 cut(s) 143, 311, 615
AclI AACGTT 1 cut(s) 486
AclWI GGATC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 702
AcsI RAATTY 1 cut(s) 863
AcuI CTGAAG 1 cut(s) 663
AcyI GRCGYC 1 cut(s) 606
AfaI GTAC 1 cut(s) 883
AfiI CCNNNNNNNGG 3 cut(s) 66, 69, 474
AgeI ACCGGT 1 cut(s) 884
AgsI TTSAA 2 cut(s) 298, 602
AluBI AGCT 7 cut(s) 218, 306, 341, 492, 517, 673, 741
AluI AGCT 7 cut(s) 218, 306, 341, 492, 517, 673, 741
Alw21I GWGCWC 1 cut(s) 220
Alw26I GTCTC 3 cut(s) 171, 262, 380
AlwI GGATC 1 cut(s) 257
AoxI GGCC 2 cut(s) 638, 702
ApeKI GCWGC 2 cut(s) 338, 806
ApoI RAATTY 1 cut(s) 863
AsiGI ACCGGT 1 cut(s) 884
Asp700I GAANNNNTTC 1 cut(s) 740
AspS9I GGNCC 2 cut(s) 413, 651
AsuC2I CCSGG 1 cut(s) 750
AsuHPI GGTGA 1 cut(s) 172
AvaII GGWCC 2 cut(s) 413, 651
AxyI CCTNAGG 1 cut(s) 843
BalI TGGCCA 1 cut(s) 704
BanII GRGCYC 1 cut(s) 220
BbsI GAAGAC 2 cut(s) 218, 609
Bbv12I GWGCWC 1 cut(s) 220
BbvI GCAGC 2 cut(s) 350, 793
BccI CCATC 3 cut(s) 60, 133, 615
BcgI CGANNNNNNTGC 2 cut(s) 788, 822
BciVI GTATCC 1 cut(s) 471
BcnI CCSGG 1 cut(s) 750
BcoDI GTCTC 3 cut(s) 171, 262, 380
BfaI CTAG 3 cut(s) 528, 545, 588
BfuI GTATCC 1 cut(s) 471
BisI GCNGC 3 cut(s) 339, 616, 807
BlsI GCNGC 3 cut(s) 340, 617, 808
Bme1390I CCNGG 1 cut(s) 750
Bme18I GGWCC 2 cut(s) 413, 651
BmgT120I GGNCC 2 cut(s) 413, 651
BmrFI CCNGG 1 cut(s) 750
BmsI GCATC 2 cut(s) 421, 793
BpiI GAAGAC 2 cut(s) 218, 609
BpmI CTGGAG 1 cut(s) 478
BpuEI CTTGAG 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 750
BsaHI GRCGYC 1 cut(s) 606
BsaWI WCCGGW 2 cut(s) 98, 884
BsaXI ACNNNNNCTCC 4 cut(s) 144, 174, 476, 506
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 69, 474
Bse118I RCCGGY 1 cut(s) 884
Bse1I ACTGG 1 cut(s) 810
Bse21I CCTNAGG 1 cut(s) 843
Bse3DI GCAATG 1 cut(s) 830
BseGI GGATG 1 cut(s) 144
BseLI CCNNNNNNNGG 3 cut(s) 66, 69, 474
BseMI GCAATG 1 cut(s) 830
BseMII CTCAG 2 cut(s) 226, 834
BseNI ACTGG 1 cut(s) 810
BseRI GAGGAG 2 cut(s) 454, 860
BseXI GCAGC 2 cut(s) 350, 793
BshFI GGCC 2 cut(s) 640, 704
BshTI ACCGGT 1 cut(s) 884
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 3 cut(s) 99, 749, 885
BslI CCNNNNNNNGG 3 cut(s) 66, 69, 474
BsmAI GTCTC 3 cut(s) 171, 262, 380
BsnI GGCC 2 cut(s) 640, 704
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 3 cut(s) 143, 311, 615
BspANI GGCC 2 cut(s) 640, 704
BspCNI CTCAG 2 cut(s) 225, 835
BspPI GGATC 1 cut(s) 257
BsrBI CCGCTC 1 cut(s) 615
BsrDI GCAATG 1 cut(s) 830
BsrFI RCCGGY 1 cut(s) 884
BsrI ACTGG 1 cut(s) 810
BssAI RCCGGY 1 cut(s) 884
BssMI GATC 1 cut(s) 262
BssNI GRCGYC 1 cut(s) 606
Bst4CI ACNGT 4 cut(s) 85, 160, 391, 561
Bst6I CTCTTC 3 cut(s) 31, 50, 620
BstACI GRCGYC 1 cut(s) 606
BstC8I GCNNGC 2 cut(s) 675, 828
BstDEI CTNAG 4 cut(s) 212, 417, 518, 843
BstF5I GGATG 1 cut(s) 144
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 3 cut(s) 171, 262, 380
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 4 cut(s) 206, 215, 803, 832
BstNSI RCATGY 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 748
BstV1I GCAGC 2 cut(s) 350, 793
BstV2I GAAGAC 2 cut(s) 218, 609
Bsu36I CCTNAGG 1 cut(s) 843
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 2 cut(s) 640, 704
BtsCI GGATG 1 cut(s) 144
BtsIMutI CAGTG 3 cut(s) 396, 557, 817
Cac8I GCNNGC 2 cut(s) 675, 828
Cfr10I RCCGGY 1 cut(s) 884
Cfr13I GGNCC 2 cut(s) 413, 651
Csp6I GTAC 1 cut(s) 882
CspAI ACCGGT 1 cut(s) 884
CviAII CATG 3 cut(s) 291, 380, 445
CviQI GTAC 1 cut(s) 882
DdeI CTNAG 4 cut(s) 212, 417, 518, 843
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
EaeI YGGCCR 1 cut(s) 702
Eam1104I CTCTTC 3 cut(s) 31, 50, 620
EarI CTCTTC 3 cut(s) 31, 50, 620
EciI GGCGGA 1 cut(s) 158
Ecl136II GAGCTC 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 220
Eco32I GATATC 2 cut(s) 358, 574
Eco47I GGWCC 2 cut(s) 413, 651
Eco53kI GAGCTC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 663
Eco81I CCTNAGG 1 cut(s) 843
EcoICRI GAGCTC 1 cut(s) 218
EcoRV GATATC 2 cut(s) 358, 574
EcoT38I GRGCYC 1 cut(s) 220
FaeI CATG 3 cut(s) 294, 383, 448
FatI CATG 3 cut(s) 290, 379, 444
Fnu4HI GCNGC 3 cut(s) 339, 616, 807
FokI GGATG 1 cut(s) 151
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 3 cut(s) 339, 616, 807
FspBI CTAG 3 cut(s) 528, 545, 588
GluI GCNGC 3 cut(s) 339, 616, 807
GsuI CTGGAG 1 cut(s) 478
HaeIII GGCC 2 cut(s) 640, 704
HapII CCGG 3 cut(s) 99, 749, 885
Hin1I GRCGYC 1 cut(s) 606
Hin1II CATG 3 cut(s) 294, 383, 448
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 5 cut(s) 5, 498, 628, 772, 850
HpaII CCGG 3 cut(s) 99, 749, 885
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 5 cut(s) 76, 215, 262, 477, 565
Hpy188III TCNNGA 5 cut(s) 495, 545, 599, 610, 842
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 4 cut(s) 48, 250, 276, 461
HpyCH4III ACNGT 4 cut(s) 85, 160, 391, 561
HpyCH4IV ACGT 2 cut(s) 486, 606
HpyCH4V TGCA 4 cut(s) 125, 195, 338, 677
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 215, 803, 832
HpyF3I CTNAG 4 cut(s) 212, 417, 518, 843
HpySE526I ACGT 2 cut(s) 486, 606
Hsp92I GRCGYC 1 cut(s) 606
Hsp92II CATG 3 cut(s) 294, 383, 448
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 2 cut(s) 101, 497
Lsp1109I GCAGC 2 cut(s) 350, 793
LweI GCATC 2 cut(s) 421, 793
MaeI CTAG 3 cut(s) 528, 545, 588
MaeII ACGT 2 cut(s) 486, 606
MaeIII GTNAC 3 cut(s) 94, 154, 420
MalI GATC 1 cut(s) 264
MbiI CCGCTC 1 cut(s) 615
MboI GATC 1 cut(s) 262
MboII GAAGA 6 cut(s) 18, 37, 218, 261, 614, 637
MhlI GDGCHC 1 cut(s) 220
MlsI TGGCCA 1 cut(s) 704
MluCI AATT 3 cut(s) 682, 863, 911
MluNI TGGCCA 1 cut(s) 704
MlyI GAGTC 4 cut(s) 14, 492, 637, 766
MmeI TCCRAC 3 cut(s) 455, 543, 878
Mox20I TGGCCA 1 cut(s) 704
MroXI GAANNNNTTC 1 cut(s) 740
MscI TGGCCA 1 cut(s) 704
MseI TTAA 4 cut(s) 167, 351, 483, 780
Msp20I TGGCCA 1 cut(s) 704
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 3 cut(s) 99, 749, 885
MspR9I CCNGG 1 cut(s) 750
MwoI GCNNNNNNNGC 4 cut(s) 206, 215, 803, 832
NciI CCSGG 1 cut(s) 750
NdeII GATC 1 cut(s) 262
NlaIII CATG 3 cut(s) 294, 383, 448
NmeAIII GCCGAG 2 cut(s) 409, 480
NmuCI GTSAC 2 cut(s) 94, 154
NspI RCATGY 1 cut(s) 383
PdmI GAANNNNTTC 1 cut(s) 740
PfeI GAWTC 1 cut(s) 850
PflMI CCANNNNNTGG 2 cut(s) 66, 69
PinAI ACCGGT 1 cut(s) 884
PkrI GCNGC 3 cut(s) 340, 617, 808
PleI GAGTC 4 cut(s) 13, 492, 636, 766
PpsI GAGTC 4 cut(s) 13, 492, 636, 766
Psp124BI GAGCTC 1 cut(s) 220
Psp1406I AACGTT 1 cut(s) 486
PspPI GGNCC 2 cut(s) 413, 651
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 1 cut(s) 883
RsaNI GTAC 1 cut(s) 882
SacI GAGCTC 1 cut(s) 220
SaqAI TTAA 4 cut(s) 167, 351, 483, 780
SatI GCNGC 3 cut(s) 339, 616, 807
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 2 cut(s) 413, 651
SchI GAGTC 4 cut(s) 14, 492, 637, 766
ScrFI CCNGG 1 cut(s) 750
SduI GDGCHC 1 cut(s) 220
SfaNI GCATC 2 cut(s) 421, 793
SinI GGWCC 2 cut(s) 413, 651
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 3 cut(s) 682, 863, 911
SsiI CCGC 3 cut(s) 143, 311, 615
SspMI CTAG 3 cut(s) 528, 545, 588
SstI GAGCTC 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 748
TaaI ACNGT 4 cut(s) 85, 160, 391, 561
TaiI ACGT 2 cut(s) 489, 609
TaqI TCGA 1 cut(s) 576
TaqII GACCGA 1 cut(s) 668
TasI AATT 3 cut(s) 682, 863, 911
TauI GCSGC 1 cut(s) 618
TfiI GAWTC 1 cut(s) 850
Tru1I TTAA 4 cut(s) 167, 351, 483, 780
Tru9I TTAA 4 cut(s) 167, 351, 483, 780
TscAI CASTG 3 cut(s) 396, 564, 817
TseFI GTSAC 2 cut(s) 94, 154
TseI GCWGC 2 cut(s) 338, 806
Tsp45I GTSAC 2 cut(s) 94, 154
TspDTI ATGAA 6 cut(s) 218, 279, 378, 410, 443, 675
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 3 cut(s) 396, 564, 817
Van91I CCANNNNNTGG 2 cut(s) 66, 69
VpaK11BI GGWCC 2 cut(s) 413, 651
XapI RAATTY 1 cut(s) 863
XbaI TCTAGA 1 cut(s) 544
XceI RCATGY 1 cut(s) 383
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 740
XspI CTAG 3 cut(s) 528, 545, 588
ZraI GACGTC 1 cut(s) 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.