RLG00000008824

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008576
Physical Location & Seq
Reverse (-)
40274787 .. 40277699
2913 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008824

Sequence Viewer

Length: 921 bp
ATGAAGTTCAAAGAAACAGATCAGCTTCCTATTCCTTCTCCGTCCCTCTCCCTAACAAGGTGGTGGTCGGAGGAGACAGTAGCGATAGTGACCGGAGCAAACAAAGGAATTGGGTTTGCGCTGGTGAAAAGAATGGCGGAGTTGGGACTGAAGGTGATATTGACAGCCAGAGACGCTGAAAGGGGTTGCAAGGCTGTTGAAGCACTTAAGGCTCAAGGTCTTCATAATATTACCTTTTTCTGCCTCGATGTTTCTGATCCTTATTCTATCAAAACCTTCTCATCATGGTTCACAGAAAACTTTGCAGCCTTGGATATTCTTGTGAACAACGCGGCAGTTTCGTTCAACGAAATCAATGAAAACTCAGTGGAACATGCCGAGACAGTAATAAAAACCAATTTCAATGGACCAAAGTTACTGACTGAGGCTCTCTTGCCCATGTTCCGTACCACATCCATTAGTCGAATACTCAATCTCAGCTCTAGACTTGGTTCCCTAAATAAAGTGGGAAACCCTAGCATAAAAGAGGTTCTAGAAAGCGAGAAACTATCAGAGGATGATATCGAGGCAGTTGTTAGCTTGTTTCTGGAACAAGTGAAGACCGGGACATGGAAGACCGGAGGTTGGCCTGAATTGTGGACGGACTATGCGGTGTCGAAGCTTGCACTGAATGCATACACCAGGGTTTTGGCAAAGCGCTACGAAGGAAGTTTGAGTGTGAATAGCTTCTGTCCAGGCTTTACTCAGACCTCGATGACTCGGTGCAAGGGAGATCACACCGCCGATGATGCGGCCATTGTCGGTGCTAGGCTGGCCTTGCTTCCTCCGGACAAGATACAGAGTGGAAAATTTTTTCTATGGGGTAGTAGCAGTAGTACTAGTACCAGTAATAATAATGTGGTGGTATCCTCCAAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

307

Amino Acids

33.5

Weight (kDa)

6.85

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 27 - 166 5.4e-29 short chain dehydrogenase
KR PF08659 28 - 164 5.2e-08 KR domain
Epimerase PF01370 29 - 161 5.2e-06 NAD dependent epimerase/dehydratase family
adh_short_C2 PF13561 32 - 162 6.5e-20 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 919
AccII CGCG 1 cut(s) 332
AccIII TCCGGA 1 cut(s) 826
AciI CCGC 5 cut(s) 137, 332, 650, 780, 791
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 792
AcsI RAATTY 1 cut(s) 848
AcuI CTGAAG 1 cut(s) 170
AfaI GTAC 3 cut(s) 448, 877, 883
AfeI AGCGCT 1 cut(s) 698
AfiI CCNNNNNNNGG 3 cut(s) 57, 609, 624
AflII CTTAAG 1 cut(s) 206
AgsI TTSAA 4 cut(s) 10, 200, 346, 403
AhlI ACTAGT 1 cut(s) 878
AjnI CCWGG 2 cut(s) 680, 733
AluBI AGCT 5 cut(s) 25, 480, 579, 661, 726
AluI AGCT 5 cut(s) 25, 480, 579, 661, 726
Alw26I GTCTC 3 cut(s) 68, 165, 374
AlwI GGATC 1 cut(s) 251
Aor13HI TCCGGA 1 cut(s) 826
Aor51HI AGCGCT 1 cut(s) 698
AoxI GGCC 3 cut(s) 626, 792, 813
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 848
Asp700I GAANNNNTTC 1 cut(s) 725
AspLEI GCGC 2 cut(s) 121, 699
AspS9I GGNCC 1 cut(s) 407
AsuC2I CCSGG 1 cut(s) 604
AsuHPI GGTGA 2 cut(s) 136, 166
AvaII GGWCC 1 cut(s) 407
BbsI GAAGAC 3 cut(s) 212, 605, 620
BbvI GCAGC 1 cut(s) 317
BciT130I CCWGG 2 cut(s) 682, 735
BciVI GTATCC 1 cut(s) 916
BcnI CCSGG 1 cut(s) 604
BcoDI GTCTC 3 cut(s) 68, 165, 374
BcuI ACTAGT 1 cut(s) 878
BfaI CTAG 5 cut(s) 483, 516, 533, 807, 879
BfoI RGCGCY 1 cut(s) 700
BfrI CTTAAG 1 cut(s) 206
BfuI GTATCC 1 cut(s) 916
BisI GCNGC 3 cut(s) 306, 333, 792
BlsI GCNGC 3 cut(s) 307, 334, 793
BmcAI AGTACT 1 cut(s) 877
Bme1390I CCNGG 3 cut(s) 604, 682, 735
Bme18I GGWCC 1 cut(s) 407
BmgT120I GGNCC 1 cut(s) 407
BmiI GGNNCC 1 cut(s) 493
BmrFI CCNGG 3 cut(s) 604, 682, 735
BmsI GCATC 1 cut(s) 778
BpiI GAAGAC 3 cut(s) 212, 605, 620
BpuEI CTTGAG 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 604
BsaJI CCNNGG 2 cut(s) 309, 681
BsaWI WCCGGW 3 cut(s) 92, 617, 826
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 609, 624
Bse1I ACTGG 1 cut(s) 885
BseAI TCCGGA 1 cut(s) 826
BseBI CCWGG 2 cut(s) 682, 735
BseDI CCNNGG 2 cut(s) 309, 681
BseGI GGATG 2 cut(s) 452, 562
BseLI CCNNNNNNNGG 3 cut(s) 57, 609, 624
BseMII CTCAG 4 cut(s) 378, 414, 490, 758
BseNI ACTGG 1 cut(s) 885
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 332
BshFI GGCC 3 cut(s) 628, 794, 815
BsiSI CCGG 4 cut(s) 93, 603, 618, 827
BslFI GGGAC 3 cut(s) 28, 159, 619
BslI CCNNNNNNNGG 3 cut(s) 57, 609, 624
BsmAI GTCTC 3 cut(s) 68, 165, 374
BsmBI CGTCTC 1 cut(s) 165
BsmFI GGGAC 3 cut(s) 28, 159, 619
BsmI GAATGC 1 cut(s) 676
BsnI GGCC 3 cut(s) 628, 794, 815
Bsp13I TCCGGA 1 cut(s) 826
Bsp143I GATC 3 cut(s) 19, 256, 772
BspACI CCGC 5 cut(s) 137, 332, 650, 780, 791
BspANI GGCC 3 cut(s) 628, 794, 815
BspCNI CTCAG 4 cut(s) 377, 415, 489, 757
BspEI TCCGGA 1 cut(s) 826
BspFNI CGCG 1 cut(s) 332
BspLI GGNNCC 1 cut(s) 493
BspPI GGATC 1 cut(s) 251
BspTI CTTAAG 1 cut(s) 206
BsrI ACTGG 1 cut(s) 885
BssECI CCNNGG 2 cut(s) 309, 681
BssMI GATC 3 cut(s) 19, 256, 772
BssT1I CCWWGG 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 682, 735
Bst4CI ACNGT 2 cut(s) 79, 385
BstAFI CTTAAG 1 cut(s) 206
BstAPI GCANNNNNTGC 1 cut(s) 671
BstC8I GCNNGC 2 cut(s) 663, 813
BstDEI CTNAG 4 cut(s) 364, 423, 476, 744
BstF5I GGATG 2 cut(s) 452, 562
BstFNI CGCG 1 cut(s) 332
BstH2I RGCGCY 1 cut(s) 700
BstHHI GCGC 2 cut(s) 121, 699
BstKTI GATC 3 cut(s) 22, 259, 775
BstMAI GTCTC 3 cut(s) 68, 165, 374
BstMBI GATC 3 cut(s) 19, 256, 772
BstMWI GCNNNNNNNGC 7 cut(s) 173, 200, 209, 671, 788, 812, 817
BstNI CCWGG 2 cut(s) 682, 735
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 3 cut(s) 602, 680, 733
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 317
BstV2I GAAGAC 3 cut(s) 212, 605, 620
BstXI CCANNNNNNTGG 1 cut(s) 688
BsuI GTATCC 1 cut(s) 916
BsuRI GGCC 3 cut(s) 628, 794, 815
BtsCI GGATG 2 cut(s) 452, 562
BtsIMutI CAGTG 2 cut(s) 372, 665
Cac8I GCNNGC 2 cut(s) 663, 813
CfoI GCGC 2 cut(s) 121, 699
Cfr13I GGNCC 1 cut(s) 407
CseI GACGC 1 cut(s) 182
Csp6I GTAC 3 cut(s) 447, 876, 882
CviAII CATG 4 cut(s) 285, 374, 439, 609
CviQI GTAC 3 cut(s) 447, 876, 882
DdeI CTNAG 4 cut(s) 364, 423, 476, 744
DpnI GATC 3 cut(s) 21, 258, 774
DpnII GATC 3 cut(s) 19, 256, 772
EaeI YGGCCR 1 cut(s) 792
EciI GGCGGA 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 309
Eco32I GATATC 1 cut(s) 562
Eco47I GGWCC 1 cut(s) 407
Eco47III AGCGCT 1 cut(s) 698
Eco57I CTGAAG 1 cut(s) 170
EcoRII CCWGG 2 cut(s) 680, 733
EcoRV GATATC 1 cut(s) 562
EcoT14I CCWWGG 1 cut(s) 309
EcoT22I ATGCAT 1 cut(s) 676
ErhI CCWWGG 1 cut(s) 309
Esp3I CGTCTC 1 cut(s) 165
FaeI CATG 4 cut(s) 288, 377, 442, 612
FaqI GGGAC 3 cut(s) 28, 159, 619
FatI CATG 4 cut(s) 284, 373, 438, 608
Fnu4HI GCNGC 3 cut(s) 306, 333, 792
FokI GGATG 2 cut(s) 439, 569
Fsp4HI GCNGC 3 cut(s) 306, 333, 792
FspBI CTAG 5 cut(s) 483, 516, 533, 807, 879
GlaI GCGC 2 cut(s) 120, 698
GluI GCNGC 3 cut(s) 306, 333, 792
HaeII RGCGCY 1 cut(s) 700
HaeIII GGCC 3 cut(s) 628, 794, 815
HapII CCGG 4 cut(s) 93, 603, 618, 827
HgaI GACGC 1 cut(s) 182
HhaI GCGC 2 cut(s) 121, 699
Hin1II CATG 4 cut(s) 288, 377, 442, 612
Hin6I GCGC 2 cut(s) 119, 697
HinP1I GCGC 2 cut(s) 119, 697
HindIII AAGCTT 1 cut(s) 659
HinfI GANTC 1 cut(s) 757
HpaII CCGG 4 cut(s) 93, 603, 618, 827
HphI GGTGA 2 cut(s) 136, 166
Hpy166II GTNNAC 3 cut(s) 291, 325, 639
Hpy188I TCNGA 4 cut(s) 70, 256, 553, 747
Hpy188III TCNNGA 4 cut(s) 483, 533, 587, 827
Hpy8I GTNNAC 3 cut(s) 291, 325, 639
HpyAV CCTTC 4 cut(s) 45, 145, 286, 698
HpyCH4III ACNGT 2 cut(s) 79, 385
HpyCH4V TGCA 5 cut(s) 189, 305, 665, 674, 765
HpyF10VI GCNNNNNNNGC 7 cut(s) 173, 200, 209, 671, 788, 812, 817
HpyF3I CTNAG 4 cut(s) 364, 423, 476, 744
Hsp92II CATG 4 cut(s) 288, 377, 442, 612
HspAI GCGC 2 cut(s) 119, 697
Kpn2I TCCGGA 1 cut(s) 826
Kzo9I GATC 3 cut(s) 19, 256, 772
LmnI GCTCC 1 cut(s) 95
Lsp1109I GCAGC 1 cut(s) 317
LweI GCATC 1 cut(s) 778
MaeI CTAG 5 cut(s) 483, 516, 533, 807, 879
MaeIII GTNAC 2 cut(s) 88, 414
MalI GATC 3 cut(s) 21, 258, 774
MboI GATC 3 cut(s) 19, 256, 772
MboII GAAGA 3 cut(s) 212, 610, 625
MluCI AATT 4 cut(s) 108, 397, 632, 848
MlyI GAGTC 1 cut(s) 751
MmeI TCCRAC 1 cut(s) 48
Mph1103I ATGCAT 1 cut(s) 676
MroI TCCGGA 1 cut(s) 826
MroXI GAANNNNTTC 1 cut(s) 725
MseI TTAA 1 cut(s) 207
MspCI CTTAAG 1 cut(s) 206
MspI CCGG 4 cut(s) 93, 603, 618, 827
MspR9I CCNGG 3 cut(s) 604, 682, 735
Mva1269I GAATGC 1 cut(s) 676
MvaI CCWGG 2 cut(s) 682, 735
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 7 cut(s) 173, 200, 209, 671, 788, 812, 817
NciI CCSGG 1 cut(s) 604
NdeII GATC 3 cut(s) 19, 256, 772
NlaIII CATG 4 cut(s) 288, 377, 442, 612
NlaIV GGNNCC 1 cut(s) 493
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 1 cut(s) 88
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 1 cut(s) 377
PctI GAATGC 1 cut(s) 676
PdmI GAANNNNTTC 1 cut(s) 725
PkrI GCNGC 3 cut(s) 307, 334, 793
PleI GAGTC 1 cut(s) 751
PpsI GAGTC 1 cut(s) 751
PsiI TTATAA 1 cut(s) 919
Psp6I CCWGG 2 cut(s) 680, 733
PspGI CCWGG 2 cut(s) 680, 733
PspN4I GGNNCC 1 cut(s) 493
PspPI GGNCC 1 cut(s) 407
RsaI GTAC 3 cut(s) 448, 877, 883
RsaNI GTAC 3 cut(s) 447, 876, 882
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 3 cut(s) 306, 333, 792
Sau3AI GATC 3 cut(s) 19, 256, 772
Sau96I GGNCC 1 cut(s) 407
ScaI AGTACT 1 cut(s) 877
SchI GAGTC 1 cut(s) 751
ScrFI CCNGG 3 cut(s) 604, 682, 735
SfaNI GCATC 1 cut(s) 778
SinI GGWCC 1 cut(s) 407
SmlI CTYRAG 2 cut(s) 206, 213
SmoI CTYRAG 2 cut(s) 206, 213
SpeI ACTAGT 1 cut(s) 878
Sse9I AATT 4 cut(s) 108, 397, 632, 848
SsiI CCGC 5 cut(s) 137, 332, 650, 780, 791
SspI AATATT 1 cut(s) 229
SspMI CTAG 5 cut(s) 483, 516, 533, 807, 879
StyD4I CCNGG 3 cut(s) 602, 680, 733
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 2 cut(s) 79, 385
TaqI TCGA 5 cut(s) 246, 463, 564, 656, 752
TasI AATT 4 cut(s) 108, 397, 632, 848
TatI WGTACW 1 cut(s) 875
TauI GCSGC 2 cut(s) 335, 794
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 2 cut(s) 372, 672
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 3 cut(s) 17, 212, 372
TspGWI ACGGA 3 cut(s) 30, 434, 656
TspRI CASTG 2 cut(s) 372, 672
Vha464I CTTAAG 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 407
XapI RAATTY 1 cut(s) 848
XbaI TCTAGA 2 cut(s) 482, 532
XceI RCATGY 1 cut(s) 377
XmnI GAANNNNTTC 1 cut(s) 725
XspI CTAG 5 cut(s) 483, 516, 533, 807, 879
ZrmI AGTACT 1 cut(s) 877
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.