Rroxscaffold_5G00350230

Belongs to the short-chain dehydrogenases reductases (SDR) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0008576
Physical Location & Seq
Forward (+)
23944408 .. 23947017
2610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350230.1

Sequence Viewer

Length: 789 bp
ATGGCGGAGTTGGGACTGAAGGTGATATTAACAGCCAGAGACATTGAAAGGGGTTGCAAGGCTGTTGAAGCACTTAGGGCACAAGGTCTTCATAATATTACCTTTTTCCGCCTCGATGTTTCTGATCCTTGTTCTATCAAAACCTTCTCATCATGGTTCACCGAAAACTTTGCAGCCTTGGATATTCTTGTGAACAACGCAGCAGTTTCGTTCAACGAAATCCATGAAAACTCAGTGGAACATGCCGAGACAGTAATCAAAACCAATTTCAATGGACCAAAGTTACTGACTGAGGCTCTCTTGCCCATGTTCCGTACCTCATCCATCAGTCGAATACTCAATCTCAGCTCCAGACTTGGTTCCCTAAATAAAGTAGGAAACCCTAGCATAAAAGAGGTTCTAGAAAGCGAGAAACTATCAGAGGATGATATCGAGGCAGTTGTTAGCTTGTTTCTGGAACAAGTGAAGACCGGGACATGGAAGACCGGAGGTTGGCCTGAATTGTGGACGGACTATGCGGTGTCGAAGCTTGCACTGAATGCATACACCAGGGTTTTGGCAAAGCGCTACGAAGGAAGTTTGAGAGTGAATAGCTTCTGTCCCGGCTTTACTCAGACCTCGATGACTCGGTGCAAGGGAGATCACACCGCCGATGATGCGGCCATTGTCGGTGCTAGGCTGGCCTTGCTTCCTCCGGACAAGATACAGAGTGGAAAATTTTTTCTATGGGGCAGTAGCAGTAGCACTAGTACCAGTAATAATAATGTGGTGGTATCCTCCAAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00590 ko00790 ko00980 ko01100 ko05204 map00590 map00790 map00980 map01100 map05204
Pfam Domains
Protein Families
adh_short

Protein Analysis

262

Amino Acids

28.75

Weight (kDa)

6.91

Isoelectric Point (pI)

30.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 1 - 122 6.4e-19 short chain dehydrogenase
adh_short_C2 PF13561 1 - 118 4.5e-15 Enoyl-(Acyl carrier protein) reductase
adh_short_C2 PF13561 165 - 217 3.9e-06 Enoyl-(Acyl carrier protein) reductase
adh_short PF00106 168 - 212 6.9e-06 short chain dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 787
AccIII TCCGGA 1 cut(s) 694
AciI CCGC 5 cut(s) 5, 109, 518, 648, 659
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 660
AcsI RAATTY 1 cut(s) 716
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 2 cut(s) 316, 751
AfeI AGCGCT 1 cut(s) 566
AfiI CCNNNNNNNGG 2 cut(s) 477, 492
AgsI TTSAA 4 cut(s) 47, 68, 214, 271
AhlI ACTAGT 1 cut(s) 746
AjnI CCWGG 1 cut(s) 548
AluBI AGCT 4 cut(s) 348, 447, 529, 594
AluI AGCT 4 cut(s) 348, 447, 529, 594
Alw26I GTCTC 2 cut(s) 33, 242
AlwI GGATC 1 cut(s) 119
Aor13HI TCCGGA 1 cut(s) 694
Aor51HI AGCGCT 1 cut(s) 566
AoxI GGCC 3 cut(s) 494, 660, 681
ApeKI GCWGC 2 cut(s) 173, 200
ApoI RAATTY 1 cut(s) 716
Asp700I GAANNNNTTC 1 cut(s) 593
AspLEI GCGC 1 cut(s) 567
AspS9I GGNCC 1 cut(s) 275
AsuC2I CCSGG 2 cut(s) 472, 603
AsuHPI GGTGA 2 cut(s) 34, 151
AvaII GGWCC 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 82
BbsI GAAGAC 3 cut(s) 80, 473, 488
BbvI GCAGC 2 cut(s) 185, 212
BccI CCATC 1 cut(s) 332
BcgI CGANNNNNNTGC 4 cut(s) 152, 186, 189, 223
BciT130I CCWGG 1 cut(s) 550
BciVI GTATCC 1 cut(s) 784
BcnI CCSGG 2 cut(s) 472, 603
BcoDI GTCTC 2 cut(s) 33, 242
BcuI ACTAGT 1 cut(s) 746
BfaI CTAG 4 cut(s) 384, 401, 675, 747
BfoI RGCGCY 1 cut(s) 568
BfuI GTATCC 1 cut(s) 784
BisI GCNGC 3 cut(s) 174, 201, 660
BlsI GCNGC 3 cut(s) 175, 202, 661
Bme1390I CCNGG 3 cut(s) 472, 550, 603
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 361
BmrFI CCNGG 3 cut(s) 472, 550, 603
BmsI GCATC 1 cut(s) 646
BpiI GAAGAC 3 cut(s) 80, 473, 488
BpmI CTGGAG 1 cut(s) 334
BpuMI CCSGG 2 cut(s) 472, 603
BsaJI CCNNGG 2 cut(s) 177, 549
BsaWI WCCGGW 2 cut(s) 485, 694
Bsc4I CCNNNNNNNGG 2 cut(s) 477, 492
Bse1I ACTGG 1 cut(s) 753
BseAI TCCGGA 1 cut(s) 694
BseBI CCWGG 1 cut(s) 550
BseDI CCNNGG 2 cut(s) 177, 549
BseGI GGATG 2 cut(s) 320, 430
BseLI CCNNNNNNNGG 2 cut(s) 477, 492
BseMII CTCAG 4 cut(s) 246, 282, 358, 626
BseNI ACTGG 1 cut(s) 753
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 2 cut(s) 185, 212
BshFI GGCC 3 cut(s) 496, 662, 683
BsiSI CCGG 4 cut(s) 471, 486, 603, 695
BslFI GGGAC 3 cut(s) 27, 487, 585
BslI CCNNNNNNNGG 2 cut(s) 477, 492
BsmAI GTCTC 2 cut(s) 33, 242
BsmFI GGGAC 3 cut(s) 27, 487, 585
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 3 cut(s) 496, 662, 683
Bsp1286I GDGCHC 1 cut(s) 82
Bsp13I TCCGGA 1 cut(s) 694
Bsp143I GATC 2 cut(s) 124, 640
BspACI CCGC 5 cut(s) 5, 109, 518, 648, 659
BspANI GGCC 3 cut(s) 496, 662, 683
BspCNI CTCAG 4 cut(s) 245, 283, 357, 625
BspEI TCCGGA 1 cut(s) 694
BspLI GGNNCC 1 cut(s) 361
BspPI GGATC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 753
BssECI CCNNGG 2 cut(s) 177, 549
BssMI GATC 2 cut(s) 124, 640
BssT1I CCWWGG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 550
Bst4CI ACNGT 1 cut(s) 253
BstAPI GCANNNNNTGC 1 cut(s) 539
BstC8I GCNNGC 2 cut(s) 531, 681
BstDEI CTNAG 5 cut(s) 74, 232, 291, 344, 612
BstF5I GGATG 2 cut(s) 320, 430
BstH2I RGCGCY 1 cut(s) 568
BstHHI GCGC 1 cut(s) 567
BstKTI GATC 2 cut(s) 127, 643
BstMAI GTCTC 2 cut(s) 33, 242
BstMBI GATC 2 cut(s) 124, 640
BstMWI GCNNNNNNNGC 6 cut(s) 68, 77, 539, 656, 680, 685
BstNI CCWGG 1 cut(s) 550
BstNSI RCATGY 1 cut(s) 245
BstSCI CCNGG 3 cut(s) 470, 548, 601
BstSLI GKGCMC 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 185, 212
BstV2I GAAGAC 3 cut(s) 80, 473, 488
BstXI CCANNNNNNTGG 1 cut(s) 556
BsuI GTATCC 1 cut(s) 784
BsuRI GGCC 3 cut(s) 496, 662, 683
BtsCI GGATG 2 cut(s) 320, 430
BtsIMutI CAGTG 2 cut(s) 240, 533
Cac8I GCNNGC 2 cut(s) 531, 681
CfoI GCGC 1 cut(s) 567
Cfr13I GGNCC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 315, 750
CviAII CATG 5 cut(s) 153, 224, 242, 307, 477
CviQI GTAC 2 cut(s) 315, 750
DdeI CTNAG 5 cut(s) 74, 232, 291, 344, 612
DpnI GATC 2 cut(s) 126, 642
DpnII GATC 2 cut(s) 124, 640
EaeI YGGCCR 1 cut(s) 660
EciI GGCGGA 2 cut(s) 20, 98
Eco130I CCWWGG 1 cut(s) 177
Eco32I GATATC 1 cut(s) 430
Eco47I GGWCC 1 cut(s) 275
Eco47III AGCGCT 1 cut(s) 566
Eco57I CTGAAG 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 548
EcoRV GATATC 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 544
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 5 cut(s) 156, 227, 245, 310, 480
FaqI GGGAC 3 cut(s) 27, 487, 585
FatI CATG 5 cut(s) 152, 223, 241, 306, 476
Fnu4HI GCNGC 3 cut(s) 174, 201, 660
FokI GGATG 2 cut(s) 307, 437
Fsp4HI GCNGC 3 cut(s) 174, 201, 660
FspBI CTAG 4 cut(s) 384, 401, 675, 747
GlaI GCGC 1 cut(s) 566
GluI GCNGC 3 cut(s) 174, 201, 660
GsuI CTGGAG 1 cut(s) 334
HaeII RGCGCY 1 cut(s) 568
HaeIII GGCC 3 cut(s) 496, 662, 683
HapII CCGG 4 cut(s) 471, 486, 603, 695
HhaI GCGC 1 cut(s) 567
Hin1II CATG 5 cut(s) 156, 227, 245, 310, 480
Hin6I GCGC 1 cut(s) 565
HinP1I GCGC 1 cut(s) 565
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 1 cut(s) 625
HpaII CCGG 4 cut(s) 471, 486, 603, 695
HphI GGTGA 2 cut(s) 34, 151
Hpy166II GTNNAC 3 cut(s) 159, 193, 507
Hpy188I TCNGA 3 cut(s) 124, 421, 615
Hpy188III TCNNGA 4 cut(s) 351, 401, 455, 695
Hpy8I GTNNAC 3 cut(s) 159, 193, 507
HpyAV CCTTC 3 cut(s) 13, 154, 566
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4V TGCA 5 cut(s) 57, 173, 533, 542, 633
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 77, 539, 656, 680, 685
HpyF3I CTNAG 5 cut(s) 74, 232, 291, 344, 612
Hsp92II CATG 5 cut(s) 156, 227, 245, 310, 480
HspAI GCGC 1 cut(s) 565
Kpn2I TCCGGA 1 cut(s) 694
Kzo9I GATC 2 cut(s) 124, 640
LmnI GCTCC 1 cut(s) 353
Lsp1109I GCAGC 2 cut(s) 185, 212
LweI GCATC 1 cut(s) 646
MaeI CTAG 4 cut(s) 384, 401, 675, 747
MaeIII GTNAC 1 cut(s) 282
MalI GATC 2 cut(s) 126, 642
MboI GATC 2 cut(s) 124, 640
MboII GAAGA 3 cut(s) 80, 478, 493
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 3 cut(s) 265, 500, 716
MlyI GAGTC 1 cut(s) 619
Mph1103I ATGCAT 1 cut(s) 544
MroI TCCGGA 1 cut(s) 694
MroXI GAANNNNTTC 1 cut(s) 593
MseI TTAA 1 cut(s) 29
MspI CCGG 4 cut(s) 471, 486, 603, 695
MspR9I CCNGG 3 cut(s) 472, 550, 603
Mva1269I GAATGC 1 cut(s) 544
MvaI CCWGG 1 cut(s) 550
MwoI GCNNNNNNNGC 6 cut(s) 68, 77, 539, 656, 680, 685
NciI CCSGG 2 cut(s) 472, 603
NdeII GATC 2 cut(s) 124, 640
NlaIII CATG 5 cut(s) 156, 227, 245, 310, 480
NlaIV GGNNCC 1 cut(s) 361
NmeAIII GCCGAG 1 cut(s) 271
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 1 cut(s) 245
PctI GAATGC 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 593
PkrI GCNGC 3 cut(s) 175, 202, 661
PleI GAGTC 1 cut(s) 619
PpsI GAGTC 1 cut(s) 619
PsiI TTATAA 1 cut(s) 787
Psp6I CCWGG 1 cut(s) 548
PspGI CCWGG 1 cut(s) 548
PspN4I GGNNCC 1 cut(s) 361
PspPI GGNCC 1 cut(s) 275
RsaI GTAC 2 cut(s) 316, 751
RsaNI GTAC 2 cut(s) 315, 750
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 3 cut(s) 174, 201, 660
Sau3AI GATC 2 cut(s) 124, 640
Sau96I GGNCC 1 cut(s) 275
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 3 cut(s) 472, 550, 603
SduI GDGCHC 1 cut(s) 82
SfaNI GCATC 1 cut(s) 646
SinI GGWCC 1 cut(s) 275
SpeI ACTAGT 1 cut(s) 746
Sse9I AATT 3 cut(s) 265, 500, 716
SsiI CCGC 5 cut(s) 5, 109, 518, 648, 659
SspI AATATT 1 cut(s) 97
SspMI CTAG 4 cut(s) 384, 401, 675, 747
StyD4I CCNGG 3 cut(s) 470, 548, 601
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 253
TaqI TCGA 5 cut(s) 114, 331, 432, 524, 620
TasI AATT 3 cut(s) 265, 500, 716
TauI GCSGC 1 cut(s) 662
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 2 cut(s) 240, 540
TseI GCWGC 2 cut(s) 173, 200
TspDTI ATGAA 2 cut(s) 80, 240
TspGWI ACGGA 2 cut(s) 302, 524
TspRI CASTG 2 cut(s) 240, 540
VpaK11BI GGWCC 1 cut(s) 275
XapI RAATTY 1 cut(s) 716
XbaI TCTAGA 1 cut(s) 400
XceI RCATGY 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 593
XspI CTAG 4 cut(s) 384, 401, 675, 747
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.