Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012305

Physical Location & Seq

Genomic Coordinates Reverse (-)

22342321 .. 22343576

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAGGAAAATGGAAGCGAAGAAGGAAGAGATAAAGAAAGGTCCATGGAAAGCCGAAGAAGACGAAGTACTCATCAACCATGTCAAGAGATACGGTCCTCGTGATTGGAGCTCCATTCGATCCAAAGGTCTTCTTCAACGCACCGGCAAATCCTGTCGTCTTCGTTGGGTCAATAAACTCCGTCCCAATCTCAAAAATGGATGCAAGTTCTCGGCTGACGAAGAGAGGACTGTGATTGAGTTACAATCTGAGTTTGGTAACAAATGGGCGAGAATCGCTACGTATCTACCGGGAAGAACTGATAACGATGTGAAGAATTTCTGGAGTAGCAGACAAAAGAGACTCGCTAGGATTCTTCATAACTCCTCTGATGCATCGAGTTCGAGTTTCAATCCCAAATCTTCTTCTTCTCATCGACTCAAGGGCAAAAACGTCAAACCAATCCGTCAATCCTCTCAGGGTTTTGGTTTGGTTGAGGAAGAGGTTACAGTTTCTTCTTCATGTTCCCAGATGGTTCCTTATTCATCTGATCAAGTTGGTGATGAAGTCTTGAGGTTGCCGGATTTGGGTGTTAAGTTAGAGCATCAGCCTTTCGCTTTTGGCACTGATCTTGTCCTAGCAGAGTACTCTGACTCACAGAATGATGCAAATCAGCAAGCAATCAGCCCTTTCTCTCCAGAAAGCAGAGAGCTTTTGGCTAGACTTGACGACCCTTTTTACTATGATATACTTGGACCAGCTGATTCTTCTGAGCCATTGTTCGCTCTCCCTCAGCCGTTCTTCGAGCCTTCGCCTGTGCCGAGAAGATGCAGACATGTTTCAAAGGATGAAGAAGCTGATGTTTTCTTAGACGATTTCCCAGCTGACATGTTTGATCAGGTTGATCCAATCCCAAGTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0044770 GO:0044839 GO:0045893 GO:0045935 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048518 GO:0048522 GO:0048555 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0055046 GO:0055047 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

300

Amino Acids

34.06

Weight (kDa)

6.27

Isoelectric Point (pI)

69.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	13 - 58	9.1e-13	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	16 - 67	2.1e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 109	1.6e-12	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60460
fragaria_vesca	FvH4_1g25630 FvH4_7g09670
malus_domestica	MD00G1058800.v1.1 MD07G1101000.v1.1
prunus_persica	Prupe.2G124100_v2.0.a1
pyrus_communis	pycom02g18160
rosa_chinensis	RchiOBHm_Chr1g0346571
rosa_laevigata	RLG00000028792
rosa_multiflora	Rmu_sc0002640.1_g000007 Rmu_sc0006463.1_g000019
rosa_roxburghii	Rroxscaffold_4G00308280
rosa_rugosa	Rorug01G0181200 Rorug01G0181300
rosa_samantha	Rh1AG200400 Rh1BG166700 Rh1CG185400 Rh1DG197500
rosa_wichuraiana	Rw1G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	114, 878
AcsI	RAATTY	1 cut(s)	316
AfaI	GTAC	2 cut(s)	69, 626
AfiI	CCNNNNNNNGG	1 cut(s)	566
AflIII	ACRYGT	2 cut(s)	814, 867
AgsI	TTSAA	3 cut(s)	137, 391, 822
AluBI	AGCT	5 cut(s)	111, 691, 740, 836, 863
AluI	AGCT	5 cut(s)	111, 691, 740, 836, 863
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	2 cut(s)	114, 878
ApoI	RAATTY	1 cut(s)	316
Asp700I	GAANNNNTTC	1 cut(s)	317
AspS9I	GGNCC	3 cut(s)	41, 95, 734
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	551
AvaII	GGWCC	3 cut(s)	41, 95, 734
BanII	GRGCYC	1 cut(s)	113
BarI	GAAGNNNNNNTAC	2 cut(s)	51, 83
BauI	CACGAG	1 cut(s)	99
BbsI	GAAGAC	3 cut(s)	66, 122, 152
Bbv12I	GWGCWC	1 cut(s)	113
BbvCI	CCTCAGC	1 cut(s)	771
BccI	CCATC	1 cut(s)	505
BceAI	ACGGC	1 cut(s)	760
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BclI	TGATCA	2 cut(s)	529, 874
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	334
BfaI	CTAG	3 cut(s)	348, 617, 699
BmcAI	AGTACT	2 cut(s)	69, 626
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	3 cut(s)	41, 95, 734
BmgT120I	GGNCC	3 cut(s)	41, 95, 734
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	6 cut(s)	191, 361, 383, 592, 634, 797
BpiI	GAAGAC	3 cut(s)	66, 122, 152
BpmI	CTGGAG	2 cut(s)	343, 660
Bpu10I	CCTNAGC	1 cut(s)	771
BpuEI	CTTGAG	2 cut(s)	404, 571
BpuMI	CCSGG	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse118I	RCCGGY	1 cut(s)	143
Bse8I	GATNNNNATC	1 cut(s)	648
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	2 cut(s)	206, 832
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMII	CTCAG	4 cut(s)	240, 470, 741, 785
BseRI	GAGGAG	1 cut(s)	355
BseYI	CCCAGC	1 cut(s)	859
BsiHKAI	GWGCWC	1 cut(s)	113
BsiSI	CCGG	3 cut(s)	144, 290, 560
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	566
BsmAI	GTCTC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	5 cut(s)	119, 529, 607, 874, 883
Bsp19I	CCATGG	1 cut(s)	44
BspCNI	CTCAG	4 cut(s)	241, 469, 742, 784
BspLI	GGNNCC	1 cut(s)	516
BspPI	GGATC	2 cut(s)	114, 878
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	5 cut(s)	119, 529, 607, 874, 883
BssSI	CACGAG	1 cut(s)	99
BssT1I	CCWWGG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	99
Bst4CI	ACNGT	3 cut(s)	95, 232, 490
Bst6I	CTCTTC	3 cut(s)	21, 216, 474
BstBAI	YACGTR	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	657
BstDEI	CTNAG	6 cut(s)	249, 456, 750, 771, 847, 900
BstDSI	CCRYGG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	206, 832
BstKTI	GATC	5 cut(s)	122, 532, 610, 877, 886
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	5 cut(s)	119, 529, 607, 874, 883
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNSI	RCATGY	2 cut(s)	818, 871
BstSCI	CCNGG	1 cut(s)	289
BstSNI	TACGTA	1 cut(s)	282
BstV2I	GAAGAC	3 cut(s)	66, 122, 152
BtgI	CCRYGG	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	206, 832
BtsIMutI	CAGTG	1 cut(s)	603
Cac8I	GCNNGC	1 cut(s)	657
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	3 cut(s)	41, 95, 734
Csp6I	GTAC	2 cut(s)	68, 625
CviAII	CATG	5 cut(s)	45, 80, 501, 815, 868
CviQI	GTAC	2 cut(s)	68, 625
DdeI	CTNAG	6 cut(s)	249, 456, 750, 771, 847, 900
DpnI	GATC	5 cut(s)	121, 531, 609, 876, 885
DpnII	GATC	5 cut(s)	119, 529, 607, 874, 883
Eam1104I	CTCTTC	3 cut(s)	21, 216, 474
EarI	CTCTTC	3 cut(s)	21, 216, 474
Ecl136II	GAGCTC	1 cut(s)	111
Eco105I	TACGTA	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	44
Eco24I	GRGCYC	1 cut(s)	113
Eco47I	GGWCC	3 cut(s)	41, 95, 734
Eco53kI	GAGCTC	1 cut(s)	111
EcoICRI	GAGCTC	1 cut(s)	111
EcoT14I	CCWWGG	1 cut(s)	44
EcoT22I	ATGCAT	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	44
FaeI	CATG	5 cut(s)	48, 83, 504, 818, 871
FaiI	YATR	8 cut(s)	46, 81, 360, 502, 723, 728, 816, 869
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	5 cut(s)	44, 79, 500, 814, 867
FbaI	TGATCA	2 cut(s)	529, 874
FokI	GGATG	2 cut(s)	213, 839
FriOI	GRGCYC	1 cut(s)	113
FspBI	CTAG	3 cut(s)	348, 617, 699
GsaI	CCCAGC	1 cut(s)	863
GsuI	CTGGAG	2 cut(s)	343, 660
HapII	CCGG	3 cut(s)	144, 290, 560
Hin1II	CATG	5 cut(s)	48, 83, 504, 818, 871
HinfI	GANTC	6 cut(s)	273, 342, 352, 417, 632, 743
HpaII	CCGG	3 cut(s)	144, 290, 560
HphI	GGTGA	1 cut(s)	551
Hpy188I	TCNGA	5 cut(s)	250, 370, 529, 631, 751
Hpy188III	TCNNGA	5 cut(s)	85, 101, 322, 550, 677
HpyAV	CCTTC	2 cut(s)	16, 798
HpyCH4III	ACNGT	3 cut(s)	95, 232, 490
HpyCH4IV	ACGT	2 cut(s)	281, 432
HpyCH4V	TGCA	4 cut(s)	204, 374, 647, 810
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	6 cut(s)	249, 456, 750, 771, 847, 900
HpySE526I	ACGT	2 cut(s)	281, 432
Hsp92II	CATG	5 cut(s)	48, 83, 504, 818, 871
Ksp22I	TGATCA	2 cut(s)	529, 874
Kzo9I	GATC	5 cut(s)	119, 529, 607, 874, 883
LmnI	GCTCC	2 cut(s)	108, 116
LweI	GCATC	6 cut(s)	191, 361, 383, 592, 634, 797
MaeI	CTAG	3 cut(s)	348, 617, 699
MaeII	ACGT	2 cut(s)	281, 432
MaeIII	GTNAC	3 cut(s)	240, 257, 484
MalI	GATC	5 cut(s)	121, 531, 609, 876, 885
MboI	GATC	5 cut(s)	119, 529, 607, 874, 883
MhlI	GDGCHC	1 cut(s)	113
MluCI	AATT	1 cut(s)	316
MlyI	GAGTC	3 cut(s)	336, 411, 626
MnlI	CCTC	8 cut(s)	108, 219, 376, 463, 469, 475, 546, 780
Mph1103I	ATGCAT	1 cut(s)	376
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	1 cut(s)	573
MspA1I	CMGCKG	2 cut(s)	740, 863
MspI	CCGG	3 cut(s)	144, 290, 560
MspR9I	CCNGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	275
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	44
NdeII	GATC	5 cut(s)	119, 529, 607, 874, 883
NlaIII	CATG	5 cut(s)	48, 83, 504, 818, 871
NlaIV	GGNNCC	1 cut(s)	516
NmeAIII	GCCGAG	2 cut(s)	191, 825
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	2 cut(s)	818, 871
PciI	ACATGT	2 cut(s)	814, 867
PcsI	WCGNNNNNNNCGW	1 cut(s)	797
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	3 cut(s)	273, 352, 743
PleI	GAGTC	3 cut(s)	336, 411, 626
PpsI	GAGTC	3 cut(s)	336, 411, 626
Ppu21I	YACGTR	1 cut(s)	282
PscI	ACATGT	2 cut(s)	814, 867
Psp124BI	GAGCTC	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	859
PspN4I	GGNNCC	1 cut(s)	516
PspPI	GGNCC	3 cut(s)	41, 95, 734
PvuII	CAGCTG	2 cut(s)	740, 863
RsaI	GTAC	2 cut(s)	69, 626
RsaNI	GTAC	2 cut(s)	68, 625
SacI	GAGCTC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	573
Sau3AI	GATC	5 cut(s)	119, 529, 607, 874, 883
Sau96I	GGNCC	3 cut(s)	41, 95, 734
ScaI	AGTACT	2 cut(s)	69, 626
SchI	GAGTC	3 cut(s)	336, 411, 626
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	113
SfaNI	GCATC	6 cut(s)	191, 361, 383, 592, 634, 797
SinI	GGWCC	3 cut(s)	41, 95, 734
SmlI	CTYRAG	2 cut(s)	419, 550
SmoI	CTYRAG	2 cut(s)	419, 550
SnaBI	TACGTA	1 cut(s)	282
Sse9I	AATT	1 cut(s)	316
SspMI	CTAG	3 cut(s)	348, 617, 699
SstI	GAGCTC	1 cut(s)	113
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	44
TaaI	ACNGT	3 cut(s)	95, 232, 490
TaiI	ACGT	2 cut(s)	284, 435
TaqI	TCGA	5 cut(s)	118, 377, 383, 415, 783
TasI	AATT	1 cut(s)	316
TatI	WGTACW	2 cut(s)	67, 624
TfiI	GAWTC	3 cut(s)	273, 352, 743
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	1 cut(s)	610
TspDTI	ATGAA	5 cut(s)	347, 489, 513, 558, 843
TspGWI	ACGGA	2 cut(s)	170, 434
TspRI	CASTG	1 cut(s)	610
VpaK11BI	GGWCC	3 cut(s)	41, 95, 734
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	2 cut(s)	818, 871
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	3 cut(s)	348, 617, 699
ZrmI	AGTACT	2 cut(s)	69, 626
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.