Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012305

Physical Location & Seq

Genomic Coordinates Forward (+)

24963560 .. 24964425

Gene Structure 866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0181300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTTTTCAAATGTCAATAACGACACGATGATTACTAAAAAGAGAAGACCAAGGTCAAGGTGGTCTGAGCTCCCTACAGAACTACTAGAGTTGATCATGAAAAAGCTTACTTCTGTGGACATCCTTCGCTTTGAAGCTGTCTGTTCTTGTTGGAATCAAGCTGCAAAATCTTATATCTCTGCCCCATATTTCACACTCGACATGCCTCAAACCCCATGGCTTATGATTCCTGGTGGTGAAGAAAATCATGTCCATACTCGCCGCTTCTTCAACCTCGCAGAGTTCAAGTACTACACTATCAATAACGCGTTTGGAGATATTCCTGATGCCTGGTGTGTCGGTTCATCACATGGGTGGCTGGTCCTTACGGAGGAGAAAGGAACTGCTTGTCTTTTTAATCCGTTTTCTGGAGATAGGATTGAACTCCCATCAATATGGACACTGCATCCAGTCATAAGCAAGGATTATATCGCCAAAGCTGTCACCTCCTCCAAGCCACCATCGTCGTCATCCTCGTCTTCCAGTAAGGACTTCGTTGTTGCAATAATACTCTACTCTAATATGTGGATAACGCAACTTGCTTTCCATAGGCATGGAGACGACGCATGGACTGGCTTCGGTCAGAAGCGTACTGTCTATCATGACGAATTATTTGGTGGAGTCCTTGGGTGCACTTTTGTTGGTGAGGCGATTTATAGTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0044770 GO:0044839 GO:0045893 GO:0045935 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048518 GO:0048522 GO:0048555 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0055046 GO:0055047 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

234

Amino Acids

26.49

Weight (kDa)

6.65

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	21 - 57	7e-07	F-box domain
F-box-like	PF12937	21 - 56	5.9e-07	F-box-like
Beta-prop_KIB1-4	PF03478	89 - 215	9.7e-22	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60460
fragaria_vesca	FvH4_1g25630 FvH4_7g09670
malus_domestica	MD00G1058800.v1.1 MD07G1101000.v1.1
prunus_persica	Prupe.2G124100_v2.0.a1
pyrus_communis	pycom02g18160
rosa_chinensis	RchiOBHm_Chr1g0346571
rosa_laevigata	RLG00000028792
rosa_multiflora	Rmu_sc0002640.1_g000007 Rmu_sc0006463.1_g000019
rosa_roxburghii	Rroxscaffold_4G00308280
rosa_rugosa	Rorug01G0181200 Rorug01G0181300
rosa_samantha	Rh1AG200400 Rh1BG166700 Rh1CG185400 Rh1DG197500
rosa_wichuraiana	Rw1G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	308
AciI	CCGC	1 cut(s)	262
AfaI	GTAC	2 cut(s)	290, 631
AfiI	CCNNNNNNNGG	2 cut(s)	370, 407
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	5 cut(s)	9, 134, 271, 286, 422
AjnI	CCWGG	2 cut(s)	229, 329
AleI	CACNNNNGTG	1 cut(s)	352
AluBI	AGCT	5 cut(s)	70, 106, 137, 161, 479
AluI	AGCT	5 cut(s)	70, 106, 137, 161, 479
Alw21I	GWGCWC	2 cut(s)	72, 674
Alw26I	GTCTC	1 cut(s)	591
Alw44I	GTGCAC	1 cut(s)	670
ApaLI	GTGCAC	1 cut(s)	670
ApeKI	GCWGC	1 cut(s)	161
ArsI	GACNNNNNNTTYG	2 cut(s)	635, 667
AspS9I	GGNCC	1 cut(s)	361
AsuHPI	GGTGA	3 cut(s)	248, 475, 695
AvaII	GGWCC	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	674
BanII	GRGCYC	1 cut(s)	72
BbsI	GAAGAC	2 cut(s)	52, 510
Bbv12I	GWGCWC	2 cut(s)	72, 674
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	2 cut(s)	436, 508
BciT130I	CCWGG	2 cut(s)	231, 331
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	591
BfaI	CTAG	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	75
BisI	GCNGC	2 cut(s)	162, 262
BlsI	GCNGC	2 cut(s)	163, 263
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	2 cut(s)	231, 331
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BmrFI	CCNGG	2 cut(s)	231, 331
BmsI	GCATC	2 cut(s)	316, 454
BoxI	GACNNNNGTC	1 cut(s)	52
BpiI	GAAGAC	2 cut(s)	52, 510
BpmI	CTGGAG	1 cut(s)	429
BsaJI	CCNNGG	3 cut(s)	50, 215, 664
Bsc4I	CCNNNNNNNGG	2 cut(s)	370, 407
Bse1I	ACTGG	3 cut(s)	449, 522, 616
BseBI	CCWGG	2 cut(s)	231, 331
BseDI	CCNNGG	3 cut(s)	50, 215, 664
BseGI	GGATG	3 cut(s)	120, 445, 509
BseLI	CCNNNNNNNGG	2 cut(s)	370, 407
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	3 cut(s)	449, 522, 616
BseRI	GAGGAG	2 cut(s)	386, 478
BseSI	GKGCMC	1 cut(s)	674
BseXI	GCAGC	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	308
BsiHKAI	GWGCWC	2 cut(s)	72, 674
BslI	CCNNNNNNNGG	2 cut(s)	370, 407
BsmAI	GTCTC	1 cut(s)	591
BsmBI	CGTCTC	1 cut(s)	591
Bsp1286I	GDGCHC	2 cut(s)	72, 674
Bsp143I	GATC	1 cut(s)	93
Bsp19I	CCATGG	1 cut(s)	215
BspACI	CCGC	1 cut(s)	262
BspCNI	CTCAG	1 cut(s)	58
BspFNI	CGCG	1 cut(s)	308
BspHI	TCATGA	2 cut(s)	96, 640
BsrI	ACTGG	3 cut(s)	449, 522, 616
BssECI	CCNNGG	3 cut(s)	50, 215, 664
BssMI	GATC	1 cut(s)	93
BssT1I	CCWWGG	3 cut(s)	50, 215, 664
Bst2UI	CCWGG	2 cut(s)	231, 331
Bst4CI	ACNGT	1 cut(s)	634
BstDEI	CTNAG	1 cut(s)	66
BstDSI	CCRYGG	1 cut(s)	215
BstENI	CCTNNNNNAGG	1 cut(s)	368
BstF5I	GGATG	3 cut(s)	120, 445, 509
BstFNI	CGCG	1 cut(s)	308
BstKTI	GATC	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	591
BstMBI	GATC	1 cut(s)	93
BstNI	CCWGG	2 cut(s)	231, 331
BstNSI	RCATGY	1 cut(s)	205
BstPAI	GACNNNNGTC	1 cut(s)	52
BstSCI	CCNGG	2 cut(s)	229, 329
BstSFI	CTRYAG	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	674
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	2 cut(s)	52, 510
BstXI	CCANNNNNNTGG	2 cut(s)	435, 593
BtgI	CCRYGG	1 cut(s)	215
BtsCI	GGATG	3 cut(s)	120, 445, 509
BtsI	GCAGTG	1 cut(s)	440
BtsIMutI	CAGTG	1 cut(s)	440
CciI	TCATGA	2 cut(s)	96, 640
Cfr13I	GGNCC	1 cut(s)	361
CseI	GACGC	1 cut(s)	611
Csp6I	GTAC	2 cut(s)	289, 630
CviAII	CATG	8 cut(s)	97, 202, 216, 248, 350, 593, 606, 641
CviJI	RGCY	9 cut(s)	70, 106, 137, 161, 220, 358, 479, 496, 615
CviKI_1	RGCY	9 cut(s)	70, 106, 137, 161, 220, 358, 479, 496, 615
CviQI	GTAC	2 cut(s)	289, 630
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	70
Eco130I	CCWWGG	3 cut(s)	50, 215, 664
Eco24I	GRGCYC	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	70
EcoNI	CCTNNNNNAGG	1 cut(s)	368
EcoRII	CCWGG	2 cut(s)	229, 329
EcoT14I	CCWWGG	3 cut(s)	50, 215, 664
EcoT38I	GRGCYC	1 cut(s)	72
ErhI	CCWWGG	3 cut(s)	50, 215, 664
Esp3I	CGTCTC	1 cut(s)	591
FaeI	CATG	8 cut(s)	100, 205, 219, 251, 353, 596, 609, 644
FatI	CATG	8 cut(s)	96, 201, 215, 247, 349, 592, 605, 640
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	162, 262
FokI	GGATG	3 cut(s)	107, 432, 496
FriOI	GRGCYC	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	162, 262
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	2 cut(s)	162, 262
GsuI	CTGGAG	1 cut(s)	429
HgaI	GACGC	1 cut(s)	611
Hin1II	CATG	8 cut(s)	100, 205, 219, 251, 353, 596, 609, 644
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	3 cut(s)	154, 226, 660
HphI	GGTGA	3 cut(s)	248, 475, 695
Hpy166II	GTNNAC	2 cut(s)	118, 672
Hpy188I	TCNGA	2 cut(s)	67, 624
Hpy188III	TCNNGA	4 cut(s)	97, 323, 408, 641
Hpy8I	GTNNAC	2 cut(s)	118, 672
Hpy99I	CGWCG	2 cut(s)	508, 605
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	634
HpyCH4V	TGCA	4 cut(s)	164, 445, 542, 672
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	8 cut(s)	100, 205, 219, 251, 353, 596, 609, 644
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	75
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	2 cut(s)	316, 454
MaeI	CTAG	1 cut(s)	86
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	4 cut(s)	57, 251, 259, 510
MhlI	GDGCHC	2 cut(s)	72, 674
MluCI	AATT	1 cut(s)	647
MluI	ACGCGT	1 cut(s)	306
MlyI	GAGTC	1 cut(s)	669
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	7 cut(s)	216, 284, 364, 496, 499, 523, 679
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	3 cut(s)	352, 433, 591
MspR9I	CCNGG	2 cut(s)	231, 331
MvaI	CCWGG	2 cut(s)	231, 331
MvnI	CGCG	1 cut(s)	308
NcoI	CCATGG	1 cut(s)	215
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	8 cut(s)	100, 205, 219, 251, 353, 596, 609, 644
NmuCI	GTSAC	1 cut(s)	481
NspI	RCATGY	1 cut(s)	205
OliI	CACNNNNGTG	1 cut(s)	352
PagI	TCATGA	2 cut(s)	96, 640
PcsI	WCGNNNNNNNCGW	1 cut(s)	512
PfeI	GAWTC	2 cut(s)	154, 226
PkrI	GCNGC	2 cut(s)	163, 263
PleI	GAGTC	1 cut(s)	668
PpsI	GAGTC	1 cut(s)	668
PshAI	GACNNNNGTC	1 cut(s)	52
Psp124BI	GAGCTC	1 cut(s)	72
Psp6I	CCWGG	2 cut(s)	229, 329
PspGI	CCWGG	2 cut(s)	229, 329
PspPI	GGNCC	1 cut(s)	361
RsaI	GTAC	2 cut(s)	290, 631
RsaNI	GTAC	2 cut(s)	289, 630
RseI	CAYNNNNRTG	3 cut(s)	352, 433, 591
SacI	GAGCTC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	2 cut(s)	162, 262
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	1 cut(s)	361
ScaI	AGTACT	1 cut(s)	290
SchI	GAGTC	1 cut(s)	669
ScrFI	CCNGG	2 cut(s)	231, 331
SduI	GDGCHC	2 cut(s)	72, 674
SetI	ASST	9 cut(s)	56, 62, 72, 108, 139, 163, 276, 481, 488
SfaNI	GCATC	2 cut(s)	316, 454
SfcI	CTRYAG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	3 cut(s)	352, 433, 591
Sse9I	AATT	1 cut(s)	647
SsiI	CCGC	1 cut(s)	262
SspMI	CTAG	1 cut(s)	86
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	2 cut(s)	229, 329
StyI	CCWWGG	3 cut(s)	50, 215, 664
TaaI	ACNGT	1 cut(s)	634
TaqI	TCGA	1 cut(s)	198
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	1 cut(s)	647
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	2 cut(s)	154, 226
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	1 cut(s)	447
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	2 cut(s)	113, 333
TspGWI	ACGGA	2 cut(s)	383, 390
TspRI	CASTG	1 cut(s)	447
VneI	GTGCAC	1 cut(s)	670
VpaK11BI	GGWCC	1 cut(s)	361
XagI	CCTNNNNNAGG	1 cut(s)	368
XceI	RCATGY	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XspI	CTAG	1 cut(s)	86
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.