RchiOBHm_Chr1g0346571
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012305
Physical Location & Seq
Reverse (-)
38995185 .. 38997439
2255 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57284

Sequence Viewer

Length: 936 bp
ATGGAAGGCAAAAGGGAAGAAGGTATAAGAAAAGGACCATGGAAAGCAGAGGAGGATGAAGTGCTTCTCAACCATGTGAAGAAATGTGGCCCTAGAGACTGGAGCTCCATTCGATCCAAAGGCCTCTTGCAGCGTACCGGAAAGTCCTGCCGTCTCCGTTGGGTTAATAAGCTTCGACCCAACTTGAAGAATGGGTGCAAATTTTCACTAGAGGAGGAGAGGGTGGTAATAGAGTTGCAAGCGCAATTTGGGAACAAATGGGCAAAAATAGCAACACATTTGCCTGGAAGAACTGACAATGATGTCAAGAACTTTTGGAGTAGCAGGCAGAAGAGACTGGCTAGGATTCTGCAGACATCTACAGCAGCAATCACACCCTCCAAATCACACAAAAACAGAAGGGAAATATCTGTTTACCATGATGAGGTTCCTACCTTGGAGATTCCAAAGTTCAGTTGTTCATCAGAGGGAGAATCATCATCTCAGGCTGCATCATGCTCATCACCTTGCATTGGGAACTCTGATGCAATCCAAATGGTGCCACTCCCAGATCTTCTTGACTCCAAGTTGCTTGGTTTCGAAGCAAACCCCGTCCAGCAGGAGCTCGCTCTACCTGAGAATAATCTATGGATTGAATCCCAACCTCTAATCCCTTTCCTAGAGAACCCACAACCCCAAACAGACCTCGAATTCTCATCTGACACCCAAGAACTCCTGAAACTAGACTTTGACATGTTCACATCTCTGGATGCTGAACTTAGCAAACAACTCGACGTCGAGCCACCGTTTCTTGAGCCAGTAGGAAGCTGTGGAAATGTTGAAGGGGAAAAGATTGACAACCCAATAACCCCGGACTGCGTCTTCGATGACTTTCCAGCCGACATGTTTGATCAAATTGAGCCGCTGCCAAATGGCTCAAATCCATCTGATGATTGA

Protein Analysis

311

Amino Acids

34.92

Weight (kDa)

4.9

Isoelectric Point (pI)

58.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 11 - 56 2.4e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 14 - 65 9.3e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 107 9.2e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 68 - 108 9.9e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60460
fragaria_vesca FvH4_1g25630 FvH4_7g09670
malus_domestica MD00G1058800.v1.1 MD07G1101000.v1.1
prunus_persica Prupe.2G124100_v2.0.a1
pyrus_communis pycom02g18160
rosa_chinensis RchiOBHm_Chr1g0346571
rosa_laevigata RLG00000028792
rosa_multiflora Rmu_sc0002640.1_g000007 Rmu_sc0006463.1_g000019
rosa_roxburghii Rroxscaffold_4G00308280
rosa_rugosa Rorug01G0181200 Rorug01G0181300
rosa_samantha Rh1AG200400 Rh1BG166700 Rh1CG185400 Rh1DG197500
rosa_wichuraiana Rw1G016790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AatII GACGTC 1 cut(s) 777
AccB1I GGYRCC 1 cut(s) 538
AciI CCGC 1 cut(s) 902
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 2 cut(s) 200, 689
AcyI GRCGYC 1 cut(s) 774
AfaI GTAC 1 cut(s) 136
AfiI CCNNNNNNNGG 2 cut(s) 424, 512
AflIII ACRYGT 2 cut(s) 732, 882
AgsI TTSAA 3 cut(s) 187, 635, 821
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 4 cut(s) 105, 172, 604, 807
AluI AGCT 4 cut(s) 105, 172, 604, 807
Alw21I GWGCWC 2 cut(s) 107, 606
Alw26I GTCTC 3 cut(s) 90, 158, 328
AlwI GGATC 1 cut(s) 108
AoxI GGCC 2 cut(s) 88, 121
ApeKI GCWGC 4 cut(s) 130, 365, 488, 904
ApoI RAATTY 2 cut(s) 200, 689
ArsI GACNNNNNNTTYG 2 cut(s) 845, 877
Asp700I GAANNNNTTC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 35, 89
AsuC2I CCSGG 1 cut(s) 851
AsuHPI GGTGA 1 cut(s) 495
AsuII TTCGAA 1 cut(s) 579
AvaII GGWCC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 538
BanII GRGCYC 2 cut(s) 107, 606
BbsI GAAGAC 1 cut(s) 853
Bbv12I GWGCWC 2 cut(s) 107, 606
BbvI GCAGC 4 cut(s) 142, 377, 475, 891
BccI CCATC 1 cut(s) 931
BceAI ACGGC 1 cut(s) 135
BcgI CGANNNNNNTGC 2 cut(s) 751, 785
BciT130I CCWGG 1 cut(s) 285
BclI TGATCA 1 cut(s) 889
BcnI CCSGG 1 cut(s) 851
BcoDI GTCTC 3 cut(s) 90, 158, 328
BfaI CTAG 5 cut(s) 93, 209, 342, 659, 722
BfmI CTRYAG 2 cut(s) 350, 360
BglII AGATCT 1 cut(s) 550
BisI GCNGC 5 cut(s) 131, 366, 489, 902, 905
BlsI GCNGC 5 cut(s) 132, 367, 490, 903, 906
Bme1390I CCNGG 2 cut(s) 285, 851
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 35, 89
BmiI GGNNCC 2 cut(s) 429, 540
BmrFI CCNGG 2 cut(s) 285, 851
BmsI GCATC 3 cut(s) 500, 514, 739
BpiI GAAGAC 1 cut(s) 853
BpmI CTGGAG 1 cut(s) 121
Bpu14I TTCGAA 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 812
BpuMI CCSGG 1 cut(s) 851
BsaHI GRCGYC 1 cut(s) 774
BsaJI CCNNGG 3 cut(s) 38, 435, 849
BsaWI WCCGGW 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 512
Bse1I ACTGG 3 cut(s) 104, 342, 797
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 3 cut(s) 38, 435, 849
BseGI GGATG 2 cut(s) 61, 754
BseLI CCNNNNNNNGG 2 cut(s) 424, 512
BseMII CTCAG 2 cut(s) 497, 606
BseNI ACTGG 3 cut(s) 104, 342, 797
BseRI GAGGAG 3 cut(s) 65, 227, 230
BseXI GCAGC 4 cut(s) 142, 377, 475, 891
BshFI GGCC 2 cut(s) 90, 123
BshNI GGYRCC 1 cut(s) 538
BsiHKAI GWGCWC 2 cut(s) 107, 606
BsiSI CCGG 2 cut(s) 138, 851
BslI CCNNNNNNNGG 2 cut(s) 424, 512
BsmAI GTCTC 3 cut(s) 90, 158, 328
BsmBI CGTCTC 1 cut(s) 158
BsnI GGCC 2 cut(s) 90, 123
Bsp119I TTCGAA 1 cut(s) 579
Bsp1286I GDGCHC 2 cut(s) 107, 606
Bsp143I GATC 3 cut(s) 113, 550, 889
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 1 cut(s) 902
BspANI GGCC 2 cut(s) 90, 123
BspCNI CTCAG 2 cut(s) 496, 607
BspLI GGNNCC 2 cut(s) 429, 540
BspMAI CTGCAG 1 cut(s) 354
BspPI GGATC 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 579
BspT107I GGYRCC 1 cut(s) 538
BsrI ACTGG 3 cut(s) 104, 342, 797
BssECI CCNNGG 3 cut(s) 38, 435, 849
BssMI GATC 3 cut(s) 113, 550, 889
BssNI GRCGYC 1 cut(s) 774
BssT1I CCWWGG 2 cut(s) 38, 435
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 786
Bst6I CTCTTC 1 cut(s) 326
BstACI GRCGYC 1 cut(s) 774
BstBI TTCGAA 1 cut(s) 579
BstC8I GCNNGC 3 cut(s) 240, 326, 606
BstDEI CTNAG 3 cut(s) 483, 615, 758
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 2 cut(s) 61, 754
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 3 cut(s) 116, 553, 892
BstMAI GTCTC 3 cut(s) 90, 158, 328
BstMBI GATC 3 cut(s) 113, 550, 889
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 2 cut(s) 736, 886
BstSCI CCNGG 2 cut(s) 283, 849
BstSFI CTRYAG 2 cut(s) 350, 360
BstV1I GCAGC 4 cut(s) 142, 377, 475, 891
BstV2I GAAGAC 1 cut(s) 853
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
BsuRI GGCC 2 cut(s) 90, 123
BtgI CCRYGG 1 cut(s) 38
BtsCI GGATG 2 cut(s) 61, 754
Cac8I GCNNGC 3 cut(s) 240, 326, 606
CfoI GCGC 1 cut(s) 244
Cfr13I GGNCC 2 cut(s) 35, 89
CseI GACGC 1 cut(s) 847
Csp6I GTAC 1 cut(s) 135
CviAII CATG 6 cut(s) 39, 74, 419, 495, 733, 883
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 3 cut(s) 483, 615, 758
DpnI GATC 3 cut(s) 115, 552, 891
DpnII GATC 3 cut(s) 113, 550, 889
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
Ecl136II GAGCTC 2 cut(s) 105, 604
Eco130I CCWWGG 2 cut(s) 38, 435
Eco147I AGGCCT 1 cut(s) 123
Eco24I GRGCYC 2 cut(s) 107, 606
Eco47I GGWCC 1 cut(s) 35
Eco53kI GAGCTC 2 cut(s) 105, 604
EcoICRI GAGCTC 2 cut(s) 105, 604
EcoRI GAATTC 1 cut(s) 689
EcoRII CCWGG 1 cut(s) 283
EcoT14I CCWWGG 2 cut(s) 38, 435
EcoT38I GRGCYC 2 cut(s) 107, 606
ErhI CCWWGG 2 cut(s) 38, 435
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 6 cut(s) 42, 77, 422, 498, 736, 886
FaiI YATR 8 cut(s) 26, 40, 75, 420, 496, 628, 734, 884
FatI CATG 6 cut(s) 38, 73, 418, 494, 732, 882
FbaI TGATCA 1 cut(s) 889
Fnu4HI GCNGC 5 cut(s) 131, 366, 489, 902, 905
FokI GGATG 2 cut(s) 68, 761
FriOI GRGCYC 2 cut(s) 107, 606
Fsp4HI GCNGC 5 cut(s) 131, 366, 489, 902, 905
FspBI CTAG 5 cut(s) 93, 209, 342, 659, 722
GlaI GCGC 1 cut(s) 243
GluI GCNGC 5 cut(s) 131, 366, 489, 902, 905
GsuI CTGGAG 1 cut(s) 121
HaeIII GGCC 2 cut(s) 90, 123
HapII CCGG 2 cut(s) 138, 851
HgaI GACGC 1 cut(s) 847
HhaI GCGC 1 cut(s) 244
Hin1I GRCGYC 1 cut(s) 774
Hin1II CATG 6 cut(s) 42, 77, 422, 498, 736, 886
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 5 cut(s) 346, 442, 473, 560, 635
HpaII CCGG 2 cut(s) 138, 851
HphI GGTGA 1 cut(s) 495
Hpy166II GTNNAC 2 cut(s) 415, 738
Hpy188I TCNGA 4 cut(s) 466, 523, 700, 928
Hpy188III TCNNGA 5 cut(s) 307, 557, 715, 746, 791
Hpy8I GTNNAC 2 cut(s) 415, 738
Hpy99I CGWCG 2 cut(s) 776, 779
HpyAV CCTTC 3 cut(s) 14, 393, 815
HpyCH4III ACNGT 1 cut(s) 786
HpyCH4IV ACGT 1 cut(s) 774
HpyCH4V TGCA 7 cut(s) 130, 198, 238, 352, 491, 510, 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 3 cut(s) 483, 615, 758
HpySE526I ACGT 1 cut(s) 774
Hsp92I GRCGYC 1 cut(s) 774
Hsp92II CATG 6 cut(s) 42, 77, 422, 498, 736, 886
HspAI GCGC 1 cut(s) 242
Ksp22I TGATCA 1 cut(s) 889
Kzo9I GATC 3 cut(s) 113, 550, 889
LmnI GCTCC 3 cut(s) 102, 110, 601
Lsp1109I GCAGC 4 cut(s) 142, 377, 475, 891
LweI GCATC 3 cut(s) 500, 514, 739
MaeI CTAG 5 cut(s) 93, 209, 342, 659, 722
MaeII ACGT 1 cut(s) 774
MalI GATC 3 cut(s) 115, 552, 891
MboI GATC 3 cut(s) 113, 550, 889
MboII GAAGA 7 cut(s) 29, 91, 199, 300, 343, 545, 853
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 2 cut(s) 107, 606
MluCI AATT 4 cut(s) 200, 245, 689, 894
MlyI GAGTC 1 cut(s) 554
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 1 cut(s) 165
MspA1I CMGCKG 1 cut(s) 904
MspI CCGG 2 cut(s) 138, 851
MspR9I CCNGG 2 cut(s) 285, 851
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 269
NciI CCSGG 1 cut(s) 851
NcoI CCATGG 1 cut(s) 38
NdeII GATC 3 cut(s) 113, 550, 889
NlaIII CATG 6 cut(s) 42, 77, 422, 498, 736, 886
NlaIV GGNNCC 2 cut(s) 429, 540
NspI RCATGY 2 cut(s) 736, 886
NspV TTCGAA 1 cut(s) 579
PceI AGGCCT 1 cut(s) 123
PciI ACATGT 2 cut(s) 732, 882
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 4 cut(s) 346, 442, 473, 635
PflFI GACNNNGTC 1 cut(s) 857
PkrI GCNGC 5 cut(s) 132, 367, 490, 903, 906
PleI GAGTC 1 cut(s) 554
PpsI GAGTC 1 cut(s) 554
PscI ACATGT 2 cut(s) 732, 882
Psp124BI GAGCTC 2 cut(s) 107, 606
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 2 cut(s) 429, 540
PspPI GGNCC 2 cut(s) 35, 89
PstI CTGCAG 1 cut(s) 354
PsuI RGATCY 1 cut(s) 550
PsyI GACNNNGTC 1 cut(s) 857
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SacI GAGCTC 2 cut(s) 107, 606
SaqAI TTAA 1 cut(s) 165
SatI GCNGC 5 cut(s) 131, 366, 489, 902, 905
Sau3AI GATC 3 cut(s) 113, 550, 889
Sau96I GGNCC 2 cut(s) 35, 89
SchI GAGTC 1 cut(s) 554
ScrFI CCNGG 2 cut(s) 285, 851
SduI GDGCHC 2 cut(s) 107, 606
SfaNI GCATC 3 cut(s) 500, 514, 739
SfcI CTRYAG 2 cut(s) 350, 360
SfuI TTCGAA 1 cut(s) 579
SinI GGWCC 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
Sse9I AATT 4 cut(s) 200, 245, 689, 894
SseBI AGGCCT 1 cut(s) 123
SsiI CCGC 1 cut(s) 902
SspMI CTAG 5 cut(s) 93, 209, 342, 659, 722
SstI GAGCTC 2 cut(s) 107, 606
StuI AGGCCT 1 cut(s) 123
StyD4I CCNGG 2 cut(s) 283, 849
StyI CCWWGG 2 cut(s) 38, 435
TaaI ACNGT 1 cut(s) 786
TaiI ACGT 1 cut(s) 777
TaqI TCGA 7 cut(s) 112, 175, 579, 687, 771, 777, 864
TasI AATT 4 cut(s) 200, 245, 689, 894
TauI GCSGC 1 cut(s) 904
TfiI GAWTC 4 cut(s) 346, 442, 473, 635
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TseI GCWGC 4 cut(s) 130, 365, 488, 904
TspDTI ATGAA 2 cut(s) 72, 450
TspGWI ACGGA 1 cut(s) 146
Tth111I GACNNNGTC 1 cut(s) 857
VpaK11BI GGWCC 1 cut(s) 35
XapI RAATTY 2 cut(s) 200, 689
XceI RCATGY 2 cut(s) 736, 886
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 5 cut(s) 93, 209, 342, 659, 722
ZraI GACGTC 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.