MD00G1058800.v1.1
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0012305
Physical Location & Seq
Reverse (-)
10718089 .. 10719289
1201 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1058800.v1.1.491

Sequence Viewer

Length: 528 bp
ATGGAAGGTAAAAAAGAAGAGGGTATAAGGAAAGGACCATGGAAGGCAGAGGAAGACGAAGTGCTATTGAACCATGTGAAGAAATGTGGACCAAGAGACTGGAGCTCCATTCGATCCAAGGGCCTCTTGCAGCGAACCGGAAAGTCTTGCCGGCTCCGTTGGGTCAATAAGCTCCGACCCAACTTGAAGAATGGGTGCAAATTTTCAGTGGAGGAGGAGAGGGTGGTGATAGAGTTGCAGGCACAATTTGGGAACAAATGGGCAAGAATAGCGACCTATTTGCCGGGGAGGACGGACAACGACGTCAAGAATTTTTGGAGCAGCAGGCAGAAGAGGCTGGCTAGGATTCTACAGACACCAACAGCAATCACGTTCTCCTCCAAATCACATAAAACCAGAAGGGAAGTCTCTGTTTTTCATGAGCTTCCCACTTTACAGGCAATTTACCTTTTCTTCTTTAAAAAGAACTTGTACATGAGGATACGATGCAGGATAGTGGGCCCTGTTAAAATTTTGTCGGAAATTTAA

Protein Analysis

176

Amino Acids

20.52

Weight (kDa)

10.31

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 11 - 56 9.4e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 14 - 65 3.4e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 107 1e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 68 - 108 1e-05 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012305)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G60460
fragaria_vesca FvH4_1g25630 FvH4_7g09670
malus_domestica MD00G1058800.v1.1 MD07G1101000.v1.1
prunus_persica Prupe.2G124100_v2.0.a1
pyrus_communis pycom02g18160
rosa_chinensis RchiOBHm_Chr1g0346571
rosa_laevigata RLG00000028792
rosa_multiflora Rmu_sc0002640.1_g000007 Rmu_sc0006463.1_g000019
rosa_roxburghii Rroxscaffold_4G00308280
rosa_rugosa Rorug01G0181200 Rorug01G0181300
rosa_samantha Rh1AG200400 Rh1BG166700 Rh1CG185400 Rh1DG197500
rosa_wichuraiana Rw1G016790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AatII GACGTC 1 cut(s) 306
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 4 cut(s) 200, 310, 510, 522
AcyI GRCGYC 1 cut(s) 303
AfaI GTAC 1 cut(s) 473
AgsI TTSAA 2 cut(s) 70, 187
AluBI AGCT 3 cut(s) 105, 172, 424
AluI AGCT 3 cut(s) 105, 172, 424
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 2 cut(s) 90, 412
AlwI GGATC 1 cut(s) 108
AoxI GGCC 2 cut(s) 121, 499
ApaI GGGCCC 1 cut(s) 503
ApeKI GCWGC 2 cut(s) 130, 321
ApoI RAATTY 4 cut(s) 200, 310, 510, 522
AspS9I GGNCC 5 cut(s) 35, 89, 121, 499, 500
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 1 cut(s) 238
AvaII GGWCC 2 cut(s) 35, 89
BaeGI GKGCMC 1 cut(s) 503
BanII GRGCYC 2 cut(s) 107, 503
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 2 cut(s) 142, 333
BcgI CGANNNNNNTGC 2 cut(s) 262, 296
BciVI GTATCC 1 cut(s) 474
BcnI CCSGG 1 cut(s) 285
BcoDI GTCTC 2 cut(s) 90, 412
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 350
BfuI GTATCC 1 cut(s) 474
BisI GCNGC 2 cut(s) 131, 322
BlsI GCNGC 2 cut(s) 132, 323
Bme1390I CCNGG 1 cut(s) 285
Bme18I GGWCC 2 cut(s) 35, 89
BmgT120I GGNCC 5 cut(s) 35, 89, 121, 499, 500
BmiI GGNNCC 2 cut(s) 155, 501
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 1 cut(s) 476
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 121
BpuMI CCSGG 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 303
BsaJI CCNNGG 3 cut(s) 38, 117, 284
BsaWI WCCGGW 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bse118I RCCGGY 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 104
BseDI CCNNGG 3 cut(s) 38, 117, 284
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 3 cut(s) 227, 230, 367
BseSI GKGCMC 1 cut(s) 503
BseXI GCAGC 2 cut(s) 142, 333
BshFI GGCC 2 cut(s) 123, 501
BsiHKAI GWGCWC 1 cut(s) 107
BsiSI CCGG 3 cut(s) 138, 151, 284
BsmAI GTCTC 2 cut(s) 90, 412
BsnI GGCC 2 cut(s) 123, 501
Bsp120I GGGCCC 1 cut(s) 499
Bsp1286I GDGCHC 2 cut(s) 107, 503
Bsp1407I TGTACA 1 cut(s) 471
Bsp143I GATC 1 cut(s) 113
Bsp19I CCATGG 1 cut(s) 38
BspANI GGCC 2 cut(s) 123, 501
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 155, 501
BspPI GGATC 1 cut(s) 108
BsrFI RCCGGY 1 cut(s) 150
BsrGI TGTACA 1 cut(s) 471
BsrI ACTGG 1 cut(s) 104
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 3 cut(s) 38, 117, 284
BssMI GATC 1 cut(s) 113
BssNI GRCGYC 1 cut(s) 303
BssT1I CCWWGG 2 cut(s) 38, 117
Bst6I CTCTTC 2 cut(s) 12, 326
BstACI GRCGYC 1 cut(s) 303
BstAUI TGTACA 1 cut(s) 471
BstC8I GCNNGC 4 cut(s) 152, 240, 326, 339
BstDSI CCRYGG 1 cut(s) 38
BstKTI GATC 1 cut(s) 116
BstMAI GTCTC 2 cut(s) 90, 412
BstMBI GATC 1 cut(s) 113
BstMWI GCNNNNNNNGC 2 cut(s) 269, 334
BstSCI CCNGG 1 cut(s) 283
BstSFI CTRYAG 1 cut(s) 350
BstSLI GKGCMC 1 cut(s) 503
BstV1I GCAGC 2 cut(s) 142, 333
BstV2I GAAGAC 1 cut(s) 60
BstXI CCANNNNNNTGG 1 cut(s) 99
BsuI GTATCC 1 cut(s) 474
BsuRI GGCC 2 cut(s) 123, 501
BtgI CCRYGG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 4 cut(s) 152, 240, 326, 339
CciI TCATGA 1 cut(s) 418
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 5 cut(s) 35, 89, 121, 499, 500
Csp6I GTAC 1 cut(s) 472
CviAII CATG 4 cut(s) 39, 74, 419, 475
CviJI RGCY 8 cut(s) 105, 123, 154, 172, 337, 341, 424, 501
CviKI_1 RGCY 8 cut(s) 105, 123, 154, 172, 337, 341, 424, 501
CviQI GTAC 1 cut(s) 472
DpnI GATC 1 cut(s) 115
DpnII GATC 1 cut(s) 113
DraI TTTAAA 1 cut(s) 460
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
Eam1104I CTCTTC 2 cut(s) 12, 326
EarI CTCTTC 2 cut(s) 12, 326
Ecl136II GAGCTC 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 38, 117
Eco24I GRGCYC 2 cut(s) 107, 503
Eco47I GGWCC 2 cut(s) 35, 89
Eco53kI GAGCTC 1 cut(s) 105
EcoICRI GAGCTC 1 cut(s) 105
EcoO109I RGGNCCY 2 cut(s) 121, 500
EcoT14I CCWWGG 2 cut(s) 38, 117
EcoT38I GRGCYC 2 cut(s) 107, 503
ErhI CCWWGG 2 cut(s) 38, 117
FaeI CATG 4 cut(s) 42, 77, 422, 478
FaiI YATR 6 cut(s) 26, 40, 75, 390, 420, 476
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FatI CATG 4 cut(s) 38, 73, 418, 474
Fnu4HI GCNGC 2 cut(s) 131, 322
FriOI GRGCYC 2 cut(s) 107, 503
Fsp4HI GCNGC 2 cut(s) 131, 322
FspBI CTAG 1 cut(s) 342
GluI GCNGC 2 cut(s) 131, 322
GsuI CTGGAG 1 cut(s) 121
HaeIII GGCC 2 cut(s) 123, 501
HapII CCGG 3 cut(s) 138, 151, 284
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 4 cut(s) 42, 77, 422, 478
HinfI GANTC 1 cut(s) 346
HpaII CCGG 3 cut(s) 138, 151, 284
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 2 cut(s) 176, 520
Hpy188III TCNNGA 2 cut(s) 307, 419
Hpy8I GTNNAC 1 cut(s) 89
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 2 cut(s) 37, 393
HpyCH4IV ACGT 2 cut(s) 303, 371
HpyCH4V TGCA 4 cut(s) 130, 198, 238, 489
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 334
HpySE526I ACGT 2 cut(s) 303, 371
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 4 cut(s) 42, 77, 422, 478
KroI GCCGGC 1 cut(s) 150
KroNI GCCGGC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 113
LmnI GCTCC 5 cut(s) 102, 110, 159, 177, 318
Lsp1109I GCAGC 2 cut(s) 142, 333
LweI GCATC 1 cut(s) 476
MaeI CTAG 1 cut(s) 342
MaeII ACGT 2 cut(s) 303, 371
MalI GATC 1 cut(s) 115
MboI GATC 1 cut(s) 113
MboII GAAGA 6 cut(s) 29, 65, 91, 199, 343, 445
MhlI GDGCHC 2 cut(s) 107, 503
MluCI AATT 6 cut(s) 200, 245, 310, 441, 510, 522
MmeI TCCRAC 2 cut(s) 199, 498
MroNI GCCGGC 1 cut(s) 150
MseI TTAA 3 cut(s) 459, 507, 526
MspI CCGG 3 cut(s) 138, 151, 284
MspR9I CCNGG 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 269, 334
NaeI GCCGGC 1 cut(s) 152
NciI CCSGG 1 cut(s) 285
NcoI CCATGG 1 cut(s) 38
NdeII GATC 1 cut(s) 113
NgoMIV GCCGGC 1 cut(s) 150
NlaIII CATG 4 cut(s) 42, 77, 422, 478
NlaIV GGNNCC 2 cut(s) 155, 501
PagI TCATGA 1 cut(s) 418
PdiI GCCGGC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 2 cut(s) 132, 323
Psp124BI GAGCTC 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 155, 501
PspOMI GGGCCC 1 cut(s) 499
PspPI GGNCC 5 cut(s) 35, 89, 121, 499, 500
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
SacI GAGCTC 1 cut(s) 107
SaqAI TTAA 3 cut(s) 459, 507, 526
SatI GCNGC 2 cut(s) 131, 322
Sau3AI GATC 1 cut(s) 113
Sau96I GGNCC 5 cut(s) 35, 89, 121, 499, 500
ScrFI CCNGG 1 cut(s) 285
SduI GDGCHC 2 cut(s) 107, 503
SetI ASST 8 cut(s) 10, 107, 174, 278, 306, 374, 426, 450
SfaNI GCATC 1 cut(s) 476
SfcI CTRYAG 1 cut(s) 350
SinI GGWCC 2 cut(s) 35, 89
Sse9I AATT 6 cut(s) 200, 245, 310, 441, 510, 522
SspMI CTAG 1 cut(s) 342
SstI GAGCTC 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 283
StyI CCWWGG 2 cut(s) 38, 117
TaiI ACGT 2 cut(s) 306, 374
TaqI TCGA 1 cut(s) 112
TasI AATT 6 cut(s) 200, 245, 310, 441, 510, 522
TatI WGTACW 1 cut(s) 471
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 3 cut(s) 459, 507, 526
Tru9I TTAA 3 cut(s) 459, 507, 526
TscAI CASTG 1 cut(s) 213
TseI GCWGC 2 cut(s) 130, 321
TspDTI ATGAA 1 cut(s) 407
TspGWI ACGGA 2 cut(s) 146, 308
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 2 cut(s) 35, 89
XapI RAATTY 4 cut(s) 200, 310, 510, 522
XspI CTAG 1 cut(s) 342
ZraI GACGTC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.