Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002640.1

Orthogroup ID

OG0012305

Physical Location & Seq

Genomic Coordinates Reverse (-)

37533 .. 39855

Gene Structure 2323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002640.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atggaaggcaaaagggaagaaggtataagaaaaggaccatggaaagcagaggaggatgaagtgcttctcaaccatgtgaagaaatgtggccctagagactggagctccattcgatccaaaggcctcttgcagcgtactggaaagtcctgccgtctccgttgggttaataagcttcgacccaacttgaagaatgggtgcaaattttcactagaggaggagagggtggtaatagagttgcaagcgcaatttgggaacaaatgggcaaaaatagcaacacatttgcctggaagaactgacaatgatgtcaagaacttttggagtagcaggcagaagagactggctaggattctgcagacatctacagcagcaatcacaccctccaaatcacacaaaaacagaagggaaatatctgtttaccatgatgaggttcctaccttggagattccaaagttcagttgttcatcagagggaaaatcatcatctcaggctgcatcatgctcatcaccttgcattgggaactctgatgcaatccaaatggtgccactcccagatcttcttgattccaagttgcttggtttcgaagcaaaccccgtccagcaggagctcgctctacctgagaagaatctatggattgaatcccaacttcacagcccaaactatttccaaaaggtctacaatgcctcacagtcacccttcgagcttcatacttgtaccttagcagcaccctctgatcttcacggtcatgccttatctacaacctttgagatctacgctcaggcctcagcggcatctccaagcgtcaatggccatacctcggccactccaggagataaaatcatgaatcctacaaattacaaaactatgataagtttgatccctccaagggtacgtaggcaatctaatgagactctagatgcaaccacagatagggtattttccccatttcattcacaacaagatcctaccagaatcacttgcctaagggacttgggggactgggagttaggcggtagatcccatgccagaagagctctcagtgaccatttcgccgtacactcccgatgtttgccaaagaaaataaagtccccacccaagaggactattgactggggacttgggagacttgttgatgtcacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0044770 GO:0044839 GO:0045893 GO:0045935 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048518 GO:0048522 GO:0048555 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0055046 GO:0055047 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

379

Amino Acids

42.49

Weight (kDa)

9.4

Isoelectric Point (pI)

60.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60460
fragaria_vesca	FvH4_1g25630 FvH4_7g09670
malus_domestica	MD00G1058800.v1.1 MD07G1101000.v1.1
prunus_persica	Prupe.2G124100_v2.0.a1
pyrus_communis	pycom02g18160
rosa_chinensis	RchiOBHm_Chr1g0346571
rosa_laevigata	RLG00000028792
rosa_multiflora	Rmu_sc0002640.1_g000007 Rmu_sc0006463.1_g000019
rosa_roxburghii	Rroxscaffold_4G00308280
rosa_rugosa	Rorug01G0181200 Rorug01G0181300
rosa_samantha	Rh1AG200400 Rh1BG166700 Rh1CG185400 Rh1DG197500
rosa_wichuraiana	Rw1G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	538
AccI	GTMKAC	1 cut(s)	672
AciI	CCGC	2 cut(s)	785, 1008
AclWI	GGATC	4 cut(s)	108, 868, 953, 1008
AcoI	YGGCCR	2 cut(s)	805, 816
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	4 cut(s)	136, 712, 888, 1053
AfiI	CCNNNNNNNGG	5 cut(s)	424, 512, 814, 883, 927
AgsI	TTSAA	2 cut(s)	187, 635
AjnI	CCWGG	2 cut(s)	283, 823
AluBI	AGCT	5 cut(s)	105, 172, 604, 700, 1031
AluI	AGCT	5 cut(s)	105, 172, 604, 700, 1031
Alw21I	GWGCWC	3 cut(s)	107, 606, 1033
Alw26I	GTCTC	5 cut(s)	90, 158, 328, 899, 1114
AlwI	GGATC	4 cut(s)	108, 868, 953, 1008
AoxI	GGCC	5 cut(s)	88, 121, 777, 805, 816
ApeKI	GCWGC	4 cut(s)	130, 365, 488, 719
ApoI	RAATTY	1 cut(s)	200
Asp700I	GAANNNNTTC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	2 cut(s)	35, 89
AsuHPI	GGTGA	2 cut(s)	495, 681
AsuII	TTCGAA	1 cut(s)	579
AvaII	GGWCC	1 cut(s)	35
AxyI	CCTNAGG	1 cut(s)	980
BalI	TGGCCA	1 cut(s)	807
BanI	GGYRCC	1 cut(s)	538
BanII	GRGCYC	3 cut(s)	107, 606, 1033
Bbv12I	GWGCWC	3 cut(s)	107, 606, 1033
BbvCI	CCTCAGC	1 cut(s)	781
BbvI	GCAGC	4 cut(s)	142, 377, 475, 731
BceAI	ACGGC	2 cut(s)	135, 1034
BciT130I	CCWGG	2 cut(s)	285, 825
BcoDI	GTCTC	5 cut(s)	90, 158, 328, 899, 1114
BfaI	CTAG	4 cut(s)	93, 209, 342, 911
BfmI	CTRYAG	2 cut(s)	350, 360
BglI	GCCNNNNNGGC	1 cut(s)	785
BglII	AGATCT	2 cut(s)	550, 765
BisI	GCNGC	5 cut(s)	131, 366, 489, 720, 786
BlsI	GCNGC	5 cut(s)	132, 367, 490, 721, 787
Bme1390I	CCNGG	2 cut(s)	285, 825
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	35, 89
BmiI	GGNNCC	2 cut(s)	429, 540
BmrFI	CCNGG	2 cut(s)	285, 825
BmrI	ACTGGG	2 cut(s)	1006, 1117
BmsI	GCATC	4 cut(s)	500, 514, 797, 904
BmuI	ACTGGG	2 cut(s)	1006, 1117
BpmI	CTGGAG	2 cut(s)	121, 807
Bpu10I	CCTNAGC	3 cut(s)	715, 774, 781
Bpu14I	TTCGAA	1 cut(s)	579
BsaAI	YACGTR	1 cut(s)	890
BsaJI	CCNNGG	4 cut(s)	38, 435, 813, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	5 cut(s)	424, 512, 814, 883, 927
Bse1I	ACTGG	5 cut(s)	104, 142, 342, 1001, 1112
Bse21I	CCTNAGG	1 cut(s)	980
BseBI	CCWGG	2 cut(s)	285, 825
BseDI	CCNNGG	4 cut(s)	38, 435, 813, 881
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	5 cut(s)	424, 512, 814, 883, 927
BseMII	CTCAG	5 cut(s)	497, 606, 788, 795, 1048
BseNI	ACTGG	5 cut(s)	104, 142, 342, 1001, 1112
BseRI	GAGGAG	3 cut(s)	65, 227, 230
BseXI	GCAGC	4 cut(s)	142, 377, 475, 731
BshFI	GGCC	5 cut(s)	90, 123, 779, 807, 818
BshNI	GGYRCC	1 cut(s)	538
BsiHKAI	GWGCWC	3 cut(s)	107, 606, 1033
BslFI	GGGAC	4 cut(s)	998, 1007, 1069, 1125
BslI	CCNNNNNNNGG	5 cut(s)	424, 512, 814, 883, 927
BsmAI	GTCTC	5 cut(s)	90, 158, 328, 899, 1114
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	4 cut(s)	998, 1007, 1069, 1125
BsnI	GGCC	5 cut(s)	90, 123, 779, 807, 818
Bsp119I	TTCGAA	1 cut(s)	579
Bsp1286I	GDGCHC	3 cut(s)	107, 606, 1033
Bsp143I	GATC	7 cut(s)	113, 550, 730, 765, 873, 958, 1013
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	2 cut(s)	785, 1008
BspANI	GGCC	5 cut(s)	90, 123, 779, 807, 818
BspCNI	CTCAG	5 cut(s)	496, 607, 787, 794, 1047
BspHI	TCATGA	1 cut(s)	837
BspLI	GGNNCC	2 cut(s)	429, 540
BspMAI	CTGCAG	1 cut(s)	354
BspPI	GGATC	4 cut(s)	108, 868, 953, 1008
BspQI	GCTCTTC	1 cut(s)	1021
BspT104I	TTCGAA	1 cut(s)	579
BspT107I	GGYRCC	1 cut(s)	538
BsrI	ACTGG	5 cut(s)	104, 142, 342, 1001, 1112
BssECI	CCNNGG	4 cut(s)	38, 435, 813, 881
BssMI	GATC	7 cut(s)	113, 550, 730, 765, 873, 958, 1013
BssT1I	CCWWGG	3 cut(s)	38, 435, 881
Bst2UI	CCWGG	2 cut(s)	285, 825
Bst4CI	ACNGT	2 cut(s)	687, 740
Bst6I	CTCTTC	2 cut(s)	326, 1021
BstBAI	YACGTR	1 cut(s)	890
BstBI	TTCGAA	1 cut(s)	579
BstC8I	GCNNGC	3 cut(s)	240, 326, 606
BstDEI	CTNAG	7 cut(s)	483, 615, 715, 774, 781, 980, 1034
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	7 cut(s)	116, 553, 733, 768, 876, 961, 1016
BstMAI	GTCTC	5 cut(s)	90, 158, 328, 899, 1114
BstMBI	GATC	7 cut(s)	113, 550, 730, 765, 873, 958, 1013
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 785, 804, 1028
BstNI	CCWGG	2 cut(s)	285, 825
BstSCI	CCNGG	2 cut(s)	283, 823
BstSFI	CTRYAG	2 cut(s)	350, 360
BstSNI	TACGTA	1 cut(s)	890
BstV1I	GCAGC	4 cut(s)	142, 377, 475, 731
BstX2I	RGATCY	4 cut(s)	550, 765, 958, 1013
BstYI	RGATCY	4 cut(s)	550, 765, 958, 1013
Bsu36I	CCTNAGG	1 cut(s)	980
BsuRI	GGCC	5 cut(s)	90, 123, 779, 807, 818
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	1042
Cac8I	GCNNGC	3 cut(s)	240, 326, 606
CciI	TCATGA	1 cut(s)	837
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	2 cut(s)	35, 89
CseI	GACGC	1 cut(s)	787
Csp6I	GTAC	4 cut(s)	135, 711, 887, 1052
CviAII	CATG	8 cut(s)	39, 74, 419, 495, 743, 838, 1019, 1137
CviQI	GTAC	4 cut(s)	135, 711, 887, 1052
DdeI	CTNAG	7 cut(s)	483, 615, 715, 774, 781, 980, 1034
DpnI	GATC	7 cut(s)	115, 552, 732, 767, 875, 960, 1015
DpnII	GATC	7 cut(s)	113, 550, 730, 765, 873, 958, 1013
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
EaeI	YGGCCR	2 cut(s)	805, 816
Eam1104I	CTCTTC	2 cut(s)	326, 1021
EarI	CTCTTC	2 cut(s)	326, 1021
Ecl136II	GAGCTC	3 cut(s)	105, 604, 1031
Eco105I	TACGTA	1 cut(s)	890
Eco130I	CCWWGG	3 cut(s)	38, 435, 881
Eco147I	AGGCCT	2 cut(s)	123, 779
Eco24I	GRGCYC	3 cut(s)	107, 606, 1033
Eco47I	GGWCC	1 cut(s)	35
Eco53kI	GAGCTC	3 cut(s)	105, 604, 1031
Eco81I	CCTNAGG	1 cut(s)	980
EcoICRI	GAGCTC	3 cut(s)	105, 604, 1031
EcoRII	CCWGG	2 cut(s)	283, 823
EcoT14I	CCWWGG	3 cut(s)	38, 435, 881
EcoT38I	GRGCYC	3 cut(s)	107, 606, 1033
ErhI	CCWWGG	3 cut(s)	38, 435, 881
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	8 cut(s)	42, 77, 422, 498, 746, 841, 1022, 1140
FaqI	GGGAC	4 cut(s)	998, 1007, 1069, 1125
FatI	CATG	8 cut(s)	38, 73, 418, 494, 742, 837, 1018, 1136
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	5 cut(s)	131, 366, 489, 720, 786
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	3 cut(s)	107, 606, 1033
Fsp4HI	GCNGC	5 cut(s)	131, 366, 489, 720, 786
FspBI	CTAG	4 cut(s)	93, 209, 342, 911
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	5 cut(s)	131, 366, 489, 720, 786
GsuI	CTGGAG	2 cut(s)	121, 807
HaeIII	GGCC	5 cut(s)	90, 123, 779, 807, 818
HgaI	GACGC	1 cut(s)	787
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	8 cut(s)	42, 77, 422, 498, 746, 841, 1022, 1140
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	8 cut(s)	346, 442, 560, 622, 635, 841, 907, 969
HphI	GGTGA	2 cut(s)	495, 681
Hpy166II	GTNNAC	3 cut(s)	415, 673, 1054
Hpy188I	TCNGA	3 cut(s)	466, 523, 730
Hpy188III	TCNNGA	5 cut(s)	307, 557, 838, 911, 1059
Hpy8I	GTNNAC	3 cut(s)	415, 673, 1054
HpyAV	CCTTC	3 cut(s)	14, 393, 703
HpyCH4III	ACNGT	2 cut(s)	687, 740
HpyCH4IV	ACGT	1 cut(s)	889
HpyCH4V	TGCA	8 cut(s)	130, 198, 238, 352, 491, 510, 527, 917
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 785, 804, 1028
HpyF3I	CTNAG	7 cut(s)	483, 615, 715, 774, 781, 980, 1034
HpySE526I	ACGT	1 cut(s)	889
Hsp92II	CATG	8 cut(s)	42, 77, 422, 498, 746, 841, 1022, 1140
HspAI	GCGC	1 cut(s)	242
Kzo9I	GATC	7 cut(s)	113, 550, 730, 765, 873, 958, 1013
LguI	GCTCTTC	1 cut(s)	1021
LmnI	GCTCC	3 cut(s)	102, 110, 601
Lsp1109I	GCAGC	4 cut(s)	142, 377, 475, 731
LweI	GCATC	4 cut(s)	500, 514, 797, 904
MaeI	CTAG	4 cut(s)	93, 209, 342, 911
MaeII	ACGT	1 cut(s)	889
MaeIII	GTNAC	3 cut(s)	687, 1037, 1132
MalI	GATC	7 cut(s)	115, 552, 732, 767, 875, 960, 1015
MboI	GATC	7 cut(s)	113, 550, 730, 765, 873, 958, 1013
MboII	GAAGA	9 cut(s)	29, 91, 199, 300, 343, 545, 631, 725, 1038
MflI	RGATCY	4 cut(s)	550, 765, 958, 1013
MhlI	GDGCHC	3 cut(s)	107, 606, 1033
MlsI	TGGCCA	1 cut(s)	807
MluCI	AATT	3 cut(s)	200, 245, 850
MluNI	TGGCCA	1 cut(s)	807
MlyI	GAGTC	1 cut(s)	901
Mox20I	TGGCCA	1 cut(s)	807
MroXI	GAANNNNTTC	1 cut(s)	63
MscI	TGGCCA	1 cut(s)	807
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	741
Msp20I	TGGCCA	1 cut(s)	807
MspA1I	CMGCKG	1 cut(s)	785
MspR9I	CCNGG	2 cut(s)	285, 825
MvaI	CCWGG	2 cut(s)	285, 825
MwoI	GCNNNNNNNGC	4 cut(s)	269, 785, 804, 1028
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	7 cut(s)	113, 550, 730, 765, 873, 958, 1013
NlaIII	CATG	8 cut(s)	42, 77, 422, 498, 746, 841, 1022, 1140
NlaIV	GGNNCC	2 cut(s)	429, 540
NmeAIII	GCCGAG	1 cut(s)	794
NmuCI	GTSAC	3 cut(s)	687, 1037, 1132
NspV	TTCGAA	1 cut(s)	579
PagI	TCATGA	1 cut(s)	837
PceI	AGGCCT	2 cut(s)	123, 779
PciSI	GCTCTTC	1 cut(s)	1021
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	7 cut(s)	346, 442, 560, 622, 635, 841, 969
PfoI	TCCNGGA	1 cut(s)	823
PkrI	GCNGC	5 cut(s)	132, 367, 490, 721, 787
PleI	GAGTC	1 cut(s)	901
PpsI	GAGTC	1 cut(s)	901
Ppu21I	YACGTR	1 cut(s)	890
Psp124BI	GAGCTC	3 cut(s)	107, 606, 1033
Psp6I	CCWGG	2 cut(s)	283, 823
PspGI	CCWGG	2 cut(s)	283, 823
PspN4I	GGNNCC	2 cut(s)	429, 540
PspPI	GGNCC	2 cut(s)	35, 89
PstI	CTGCAG	1 cut(s)	354
PsuI	RGATCY	4 cut(s)	550, 765, 958, 1013
RsaI	GTAC	4 cut(s)	136, 712, 888, 1053
RsaNI	GTAC	4 cut(s)	135, 711, 887, 1052
RseI	CAYNNNNRTG	1 cut(s)	741
SacI	GAGCTC	3 cut(s)	107, 606, 1033
SapI	GCTCTTC	1 cut(s)	1021
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	5 cut(s)	131, 366, 489, 720, 786
Sau3AI	GATC	7 cut(s)	113, 550, 730, 765, 873, 958, 1013
Sau96I	GGNCC	2 cut(s)	35, 89
SchI	GAGTC	1 cut(s)	901
ScrFI	CCNGG	2 cut(s)	285, 825
SduI	GDGCHC	3 cut(s)	107, 606, 1033
SfaNI	GCATC	4 cut(s)	500, 514, 797, 904
SfcI	CTRYAG	2 cut(s)	350, 360
SfuI	TTCGAA	1 cut(s)	579
SinI	GGWCC	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	741
SnaBI	TACGTA	1 cut(s)	890
Sse9I	AATT	3 cut(s)	200, 245, 850
SseBI	AGGCCT	2 cut(s)	123, 779
SsiI	CCGC	2 cut(s)	785, 1008
SspMI	CTAG	4 cut(s)	93, 209, 342, 911
SstI	GAGCTC	3 cut(s)	107, 606, 1033
StuI	AGGCCT	2 cut(s)	123, 779
StyD4I	CCNGG	2 cut(s)	283, 823
StyI	CCWWGG	3 cut(s)	38, 435, 881
TaaI	ACNGT	2 cut(s)	687, 740
TaiI	ACGT	1 cut(s)	892
TaqI	TCGA	4 cut(s)	112, 175, 579, 696
TasI	AATT	3 cut(s)	200, 245, 850
TauI	GCSGC	1 cut(s)	788
TfiI	GAWTC	7 cut(s)	346, 442, 560, 622, 635, 841, 969
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	1042
TseFI	GTSAC	3 cut(s)	687, 1037, 1132
TseI	GCWGC	4 cut(s)	130, 365, 488, 719
Tsp45I	GTSAC	3 cut(s)	687, 1037, 1132
TspDTI	ATGAA	5 cut(s)	72, 450, 692, 854, 935
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	1042
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	1 cut(s)	200
XbaI	TCTAGA	1 cut(s)	910
XmiI	GTMKAC	1 cut(s)	672
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	4 cut(s)	93, 209, 342, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.