Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0012305

Physical Location & Seq

Genomic Coordinates Reverse (-)

18037303 .. 18039723

Gene Structure 2421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G124100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGAGGGTAGAAGAGAAGAGGGTATAAGGAAAGGGCCATGGAAAGCAGAGGAAGATGAAGTTCTGTTAAACCATGTGAAGAAGTGTGGCCCAAGAGACTGGAGCTCCATTCGATCCAAAGGCCTCTTGCAGAGGACTGGCAAGTCTTGCCGTCTCCGTTGGGTCAATAAGCTTAGACCCAACTTGAAGAATGGGTGCAAATTCTCACTAGAGGAGGAGAGGTTGGTGATAGACTTACAAGCACAATTTGGGAACAAATGGGCAAGAATAGCAACCTATTTGCCTGGGAGGACTGACAATGATGTTAAGAATTTTTGGAGTAGCAGGCAGAAGAGGCTGGCTAGGATTCTGCAGGCATCAGCACCCTCCAAGTCACACAAAAACAAAAGGGAAGGCCCTGTTTATGATGAGGTTCTGACTTTGGAGGGTCCAAAGTTCAGTTGTTCATCAGAGGGAGAATCATCATCACAGGCTCAATCATGCTCATCACCACCTTGCTTTGGGAACTCCGAGATTATCAAAATGGTGCCACTACCAGATCTTGTTAAGCCCAAGTTACTTGCTCTTGAAGCAAACCCTGTTCAACAAGAGCTTGCCCCAACTGAGAAGAATCCATGGATTGAGCCCCAACCACTAATCCCTTTTCCGCAAAACCCACAACCCCAAACAGACCTAGAATTCTCATTAGAAACCCAAGAACTATTGGCAAGATTTGACCCCTATTTCGACTTGTTAACGCCTCTGGTTGCTTCAGAACTTGGAAATGGAGGAGAACAACTTCTCATGGAGCCCCCATTTCTCGAACCGGTAGGAAGTTGTGGAAGTGGTGAAAGGGACAAAATTGGCAATCCCATAACCCCGGACTGTGTCTTCGACGACTTACCGGTAGACATGTTTGATCAGATTGAACAGCTTCCAAACTCATCAGAGCAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0044770 GO:0044839 GO:0045893 GO:0045935 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048518 GO:0048522 GO:0048555 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0055046 GO:0055047 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

313

Amino Acids

35.12

Weight (kDa)

5.4

Isoelectric Point (pI)

63.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60460
fragaria_vesca	FvH4_1g25630 FvH4_7g09670
malus_domestica	MD00G1058800.v1.1 MD07G1101000.v1.1
prunus_persica	Prupe.2G124100_v2.0.a1
pyrus_communis	pycom02g18160
rosa_chinensis	RchiOBHm_Chr1g0346571
rosa_laevigata	RLG00000028792
rosa_multiflora	Rmu_sc0002640.1_g000007 Rmu_sc0006463.1_g000019
rosa_roxburghii	Rroxscaffold_4G00308280
rosa_rugosa	Rorug01G0181200 Rorug01G0181300
rosa_samantha	Rh1AG200400 Rh1BG166700 Rh1CG185400 Rh1DG197500
rosa_wichuraiana	Rw1G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	142
AccB1I	GGYRCC	1 cut(s)	526
AccI	GTMKAC	1 cut(s)	888
AciI	CCGC	1 cut(s)	647
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	3 cut(s)	200, 310, 677
AcuI	CTGAAG	1 cut(s)	735
AfiI	CCNNNNNNNGG	1 cut(s)	500
AflIII	ACRYGT	1 cut(s)	891
AgeI	ACCGGT	2 cut(s)	805, 883
AgsI	TTSAA	4 cut(s)	187, 569, 584, 908
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	4 cut(s)	105, 172, 592, 913
AluI	AGCT	4 cut(s)	105, 172, 592, 913
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	2 cut(s)	90, 158
AlwI	GGATC	1 cut(s)	108
AoxI	GGCC	4 cut(s)	35, 88, 121, 394
ApeKI	GCWGC	1 cut(s)	931
ApoI	RAATTY	3 cut(s)	200, 310, 677
ArsI	GACNNNNNNTTYG	4 cut(s)	707, 739, 854, 886
AsiGI	ACCGGT	2 cut(s)	805, 883
Asp700I	GAANNNNTTC	2 cut(s)	777, 912
AspS9I	GGNCC	4 cut(s)	35, 89, 395, 428
AsuC2I	CCSGG	1 cut(s)	860
AsuHPI	GGTGA	3 cut(s)	238, 480, 839
AvaII	GGWCC	1 cut(s)	428
BanI	GGYRCC	1 cut(s)	526
BanII	GRGCYC	3 cut(s)	107, 627, 792
BbsI	GAAGAC	1 cut(s)	862
Bbv12I	GWGCWC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	135
BciT130I	CCWGG	1 cut(s)	285
BclI	TGATCA	1 cut(s)	898
BcnI	CCSGG	1 cut(s)	860
BcoDI	GTCTC	2 cut(s)	90, 158
BfaI	CTAG	3 cut(s)	209, 342, 674
BfmI	CTRYAG	1 cut(s)	350
BglII	AGATCT	1 cut(s)	538
BisI	GCNGC	1 cut(s)	932
BlsI	GCNGC	1 cut(s)	933
Bme1390I	CCNGG	2 cut(s)	285, 860
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	4 cut(s)	35, 89, 395, 428
BmiI	GGNNCC	3 cut(s)	429, 528, 789
BmrFI	CCNGG	2 cut(s)	285, 860
BmsI	GCATC	1 cut(s)	365
BpiI	GAAGAC	1 cut(s)	862
BpmI	CTGGAG	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	860
BsaJI	CCNNGG	4 cut(s)	38, 284, 614, 858
BsaWI	WCCGGW	2 cut(s)	805, 883
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 206, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse118I	RCCGGY	2 cut(s)	805, 883
Bse1I	ACTGG	2 cut(s)	104, 142
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	4 cut(s)	38, 284, 614, 858
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	2 cut(s)	104, 142
BseRI	GAGGAG	3 cut(s)	227, 230, 783
BshFI	GGCC	4 cut(s)	37, 90, 123, 396
BshNI	GGYRCC	1 cut(s)	526
BshTI	ACCGGT	2 cut(s)	805, 883
BsiHKAI	GWGCWC	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	806, 860, 884
BslFI	GGGAC	1 cut(s)	848
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	2 cut(s)	90, 158
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	848
BsnI	GGCC	4 cut(s)	37, 90, 123, 396
Bsp1286I	GDGCHC	3 cut(s)	107, 627, 792
Bsp143I	GATC	3 cut(s)	113, 538, 898
Bsp19I	CCATGG	2 cut(s)	38, 614
BspACI	CCGC	1 cut(s)	647
BspANI	GGCC	4 cut(s)	37, 90, 123, 396
BspCNI	CTCAG	1 cut(s)	595
BspLI	GGNNCC	3 cut(s)	429, 528, 789
BspMAI	CTGCAG	1 cut(s)	354
BspPI	GGATC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	526
BsrFI	RCCGGY	2 cut(s)	805, 883
BsrI	ACTGG	2 cut(s)	104, 142
BssAI	RCCGGY	2 cut(s)	805, 883
BssECI	CCNNGG	4 cut(s)	38, 284, 614, 858
BssMI	GATC	3 cut(s)	113, 538, 898
BssT1I	CCWWGG	2 cut(s)	38, 614
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	866
Bst6I	CTCTTC	3 cut(s)	7, 12, 326
BstAPI	GCANNNNNTGC	1 cut(s)	147
BstC8I	GCNNGC	4 cut(s)	326, 339, 354, 594
BstDEI	CTNAG	2 cut(s)	173, 603
BstDSI	CCRYGG	2 cut(s)	38, 614
BstKTI	GATC	3 cut(s)	116, 541, 901
BstMAI	GTCTC	2 cut(s)	90, 158
BstMBI	GATC	3 cut(s)	113, 538, 898
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 269, 334, 569
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	895
BstSCI	CCNGG	2 cut(s)	283, 858
BstSFI	CTRYAG	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	862
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	4 cut(s)	37, 90, 123, 396
BtgI	CCRYGG	2 cut(s)	38, 614
Cac8I	GCNNGC	4 cut(s)	326, 339, 354, 594
Cfr10I	RCCGGY	2 cut(s)	805, 883
Cfr13I	GGNCC	4 cut(s)	35, 89, 395, 428
CspAI	ACCGGT	2 cut(s)	805, 883
CviAII	CATG	6 cut(s)	39, 74, 480, 615, 784, 892
DdeI	CTNAG	2 cut(s)	173, 603
DpnI	GATC	3 cut(s)	115, 540, 900
DpnII	GATC	3 cut(s)	113, 538, 898
DrdI	GACNNNNNNGTC	1 cut(s)	142
DseDI	GACNNNNNNGTC	1 cut(s)	142
Eam1104I	CTCTTC	3 cut(s)	7, 12, 326
EarI	CTCTTC	3 cut(s)	7, 12, 326
Ecl136II	GAGCTC	1 cut(s)	105
Eco130I	CCWWGG	2 cut(s)	38, 614
Eco147I	AGGCCT	1 cut(s)	123
Eco24I	GRGCYC	3 cut(s)	107, 627, 792
Eco47I	GGWCC	1 cut(s)	428
Eco53kI	GAGCTC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	735
EcoICRI	GAGCTC	1 cut(s)	105
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	2 cut(s)	38, 614
EcoT38I	GRGCYC	3 cut(s)	107, 627, 792
ErhI	CCWWGG	2 cut(s)	38, 614
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	6 cut(s)	42, 77, 483, 618, 787, 895
FaiI	YATR	9 cut(s)	26, 40, 75, 405, 481, 616, 785, 854, 893
FaqI	GGGAC	1 cut(s)	848
FatI	CATG	6 cut(s)	38, 73, 479, 614, 783, 891
FbaI	TGATCA	1 cut(s)	898
FblI	GTMKAC	1 cut(s)	888
Fnu4HI	GCNGC	1 cut(s)	932
FriOI	GRGCYC	3 cut(s)	107, 627, 792
Fsp4HI	GCNGC	1 cut(s)	932
FspBI	CTAG	3 cut(s)	209, 342, 674
GluI	GCNGC	1 cut(s)	932
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	4 cut(s)	37, 90, 123, 396
HapII	CCGG	3 cut(s)	806, 860, 884
Hin1II	CATG	6 cut(s)	42, 77, 483, 618, 787, 895
HincII	GTYRAC	1 cut(s)	735
HindII	GTYRAC	1 cut(s)	735
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	3 cut(s)	346, 458, 610
HpaI	GTTAAC	1 cut(s)	735
HpaII	CCGG	3 cut(s)	806, 860, 884
HphI	GGTGA	3 cut(s)	238, 480, 839
Hpy166II	GTNNAC	2 cut(s)	735, 889
Hpy188I	TCNGA	6 cut(s)	417, 451, 511, 754, 903, 928
Hpy188III	TCNNGA	2 cut(s)	566, 800
Hpy8I	GTNNAC	2 cut(s)	735, 889
Hpy99I	CGWCG	1 cut(s)	878
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	1 cut(s)	866
HpyCH4V	TGCA	3 cut(s)	130, 198, 352
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 269, 334, 569
HpyF3I	CTNAG	2 cut(s)	173, 603
Hsp92II	CATG	6 cut(s)	42, 77, 483, 618, 787, 895
Ksp22I	TGATCA	1 cut(s)	898
KspAI	GTTAAC	1 cut(s)	735
Kzo9I	GATC	3 cut(s)	113, 538, 898
LmnI	GCTCC	3 cut(s)	102, 110, 787
LweI	GCATC	1 cut(s)	365
MaeI	CTAG	3 cut(s)	209, 342, 674
MaeIII	GTNAC	2 cut(s)	372, 555
MalI	GATC	3 cut(s)	115, 540, 900
MboI	GATC	3 cut(s)	113, 538, 898
MboII	GAAGA	8 cut(s)	24, 29, 65, 91, 199, 343, 619, 862
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	3 cut(s)	107, 627, 792
MluCI	AATT	5 cut(s)	200, 245, 310, 677, 840
MroXI	GAANNNNTTC	2 cut(s)	777, 912
MseI	TTAA	4 cut(s)	68, 306, 546, 734
MspI	CCGG	3 cut(s)	806, 860, 884
MspR9I	CCNGG	2 cut(s)	285, 860
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	4 cut(s)	147, 269, 334, 569
NciI	CCSGG	1 cut(s)	860
NcoI	CCATGG	2 cut(s)	38, 614
NdeII	GATC	3 cut(s)	113, 538, 898
NlaIII	CATG	6 cut(s)	42, 77, 483, 618, 787, 895
NlaIV	GGNNCC	3 cut(s)	429, 528, 789
NmuCI	GTSAC	1 cut(s)	372
NspI	RCATGY	1 cut(s)	895
PceI	AGGCCT	1 cut(s)	123
PciI	ACATGT	1 cut(s)	891
PdmI	GAANNNNTTC	2 cut(s)	777, 912
PfeI	GAWTC	3 cut(s)	346, 458, 610
PflFI	GACNNNGTC	1 cut(s)	866
PinAI	ACCGGT	2 cut(s)	805, 883
PkrI	GCNGC	1 cut(s)	933
PscI	ACATGT	1 cut(s)	891
Psp124BI	GAGCTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	3 cut(s)	429, 528, 789
PspPI	GGNCC	4 cut(s)	35, 89, 395, 428
PstI	CTGCAG	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	866
SacI	GAGCTC	1 cut(s)	107
SaqAI	TTAA	4 cut(s)	68, 306, 546, 734
SatI	GCNGC	1 cut(s)	932
Sau3AI	GATC	3 cut(s)	113, 538, 898
Sau96I	GGNCC	4 cut(s)	35, 89, 395, 428
ScrFI	CCNGG	2 cut(s)	285, 860
SduI	GDGCHC	3 cut(s)	107, 627, 792
SetI	ASST	9 cut(s)	107, 174, 224, 278, 414, 496, 594, 675, 915
SfaNI	GCATC	1 cut(s)	365
SfcI	CTRYAG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	428
Sse9I	AATT	5 cut(s)	200, 245, 310, 677, 840
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	647
SspMI	CTAG	3 cut(s)	209, 342, 674
SstI	GAGCTC	1 cut(s)	107
StuI	AGGCCT	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	283, 858
StyI	CCWWGG	2 cut(s)	38, 614
TaaI	ACNGT	1 cut(s)	866
TaqI	TCGA	4 cut(s)	112, 726, 801, 873
TasI	AATT	5 cut(s)	200, 245, 310, 677, 840
TfiI	GAWTC	3 cut(s)	346, 458, 610
Tru1I	TTAA	4 cut(s)	68, 306, 546, 734
Tru9I	TTAA	4 cut(s)	68, 306, 546, 734
TseFI	GTSAC	1 cut(s)	372
TseI	GCWGC	1 cut(s)	931
Tsp45I	GTSAC	1 cut(s)	372
TspDTI	ATGAA	2 cut(s)	72, 435
TspGWI	ACGGA	1 cut(s)	146
Tth111I	GACNNNGTC	1 cut(s)	866
VpaK11BI	GGWCC	1 cut(s)	428
XapI	RAATTY	3 cut(s)	200, 310, 677
XceI	RCATGY	1 cut(s)	895
XmiI	GTMKAC	1 cut(s)	888
XmnI	GAANNNNTTC	2 cut(s)	777, 912
XspI	CTAG	3 cut(s)	209, 342, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.