Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0012305

Physical Location & Seq

Genomic Coordinates Reverse (-)

16460810 .. 16462598

Gene Structure 1789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g18160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGAAGGTAAAAAAGAAGAGGGTATAAGGAAAGGGCCATGGAAGGCAGAGGAAGACGAAGTGCTATTGAACCATGTGAAGAAATGCGGACCAAGAGACTGGAGCTCCATTCGATCCAAGGGCCTCTTGCAGCGAACCGGAAAGTCTTGCCGGCTCCGTTGGGTCAATAAGCTCCGACCCAACTTGAAGAATGGGTGCAAATTTTCAGTGGAGGAGGAGAGGATGGTGATAGAGTTGCAGGCACAATTTGGGAACAAATGGGCAAGAATAGCGACCTACTTGCCGGGGAGGACGGACAACGACGTCAAGAATTTTTGGAGCAGCAGGCAGAAGAGGCTGGCTAGGATTCTACAGACACCAACAGCAGCCACGTTCTCCTCCAAATCACATAAAACCAGAAGGGAAGTCTCCGTTTTTCATGAGCTTCCCACTTTACAGATGACAGGTCCTTTTCTTCTTTTGCTTCAGGCTCCAAAATTCAATTGCTCATCAGAGGGAGAACCATCGACACAGGTTCCGTCATGCTCGTCACCGCCACCTTACATTTGGAACTCTGAGATCATCAAAATGGTGCCGCTGCTGGATATTGTTAAGCCCGAGTCTATTTGCTTCAAAACAAACCCCGTTCAACATGAACTCACCATAACTGATAAGGATACAAGGAATGAGTCCCAGTCTGTAATACCTTTCCTGCAGAACCCACAGCCCCAAACAGACCTATTCTCATCCGAAACCCAAGAACTCTTGGCAACATTCGACCCCTATTTCGACATGTTAGTACCTCTGGATGCTTCGGAGCTTGGAAATGGAGAACCACTTCCCATGGAACCTCCATTGTTTGAACCAGTAGGAAGCTGTGTAAGCTGTGAAAGGGAACAAATCGACCATACCATGGCTCCGGATTGTCTGTTGGATGACTTCCCGACAGACATGTTTGATCAACTTGACTCACTTCCGAACACATCAGGGCAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0044770 GO:0044839 GO:0045893 GO:0045935 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048518 GO:0048522 GO:0048555 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0055046 GO:0055047 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

326

Amino Acids

36.89

Weight (kDa)

5.65

Isoelectric Point (pI)

59.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60460
fragaria_vesca	FvH4_1g25630 FvH4_7g09670
malus_domestica	MD00G1058800.v1.1 MD07G1101000.v1.1
prunus_persica	Prupe.2G124100_v2.0.a1
pyrus_communis	pycom02g18160
rosa_chinensis	RchiOBHm_Chr1g0346571
rosa_laevigata	RLG00000028792
rosa_multiflora	Rmu_sc0002640.1_g000007 Rmu_sc0006463.1_g000019
rosa_roxburghii	Rroxscaffold_4G00308280
rosa_rugosa	Rorug01G0181200 Rorug01G0181300
rosa_samantha	Rh1AG200400 Rh1BG166700 Rh1CG185400 Rh1DG197500
rosa_wichuraiana	Rw1G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
AatII	GACGTC	1 cut(s)	306
AccB1I	GGYRCC	1 cut(s)	571
AccB7I	CCANNNNNTGG	1 cut(s)	892
AccIII	TCCGGA	1 cut(s)	898
AciI	CCGC	3 cut(s)	87, 533, 575
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	3 cut(s)	200, 310, 476
AcuI	CTGAAG	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	780
AfiI	CCNNNNNNNGG	1 cut(s)	892
AflIII	ACRYGT	2 cut(s)	771, 930
AgsI	TTSAA	6 cut(s)	70, 187, 481, 613, 629, 842
AluBI	AGCT	6 cut(s)	105, 172, 424, 799, 855, 864
AluI	AGCT	6 cut(s)	105, 172, 424, 799, 855, 864
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	2 cut(s)	90, 412
AlwI	GGATC	1 cut(s)	108
Ama87I	CYCGRG	1 cut(s)	596
Aor13HI	TCCGGA	1 cut(s)	898
AoxI	GGCC	2 cut(s)	35, 121
ApeKI	GCWGC	5 cut(s)	130, 321, 365, 577, 970
ApoI	RAATTY	3 cut(s)	200, 310, 476
ArsI	GACNNNNNNTTYG	2 cut(s)	749, 781
Asp700I	GAANNNNTTC	1 cut(s)	816
AspS9I	GGNCC	4 cut(s)	35, 89, 121, 446
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	3 cut(s)	238, 522, 631
AvaI	CYCGRG	1 cut(s)	596
AvaII	GGWCC	2 cut(s)	89, 446
BanI	GGYRCC	1 cut(s)	571
BanII	GRGCYC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	4 cut(s)	142, 333, 377, 564
BccI	CCATC	2 cut(s)	217, 511
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciVI	GTATCC	1 cut(s)	649
BclI	TGATCA	1 cut(s)	937
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	2 cut(s)	90, 412
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	2 cut(s)	350, 692
BfuI	GTATCC	1 cut(s)	649
BisI	GCNGC	6 cut(s)	131, 322, 366, 575, 578, 971
BlsI	GCNGC	6 cut(s)	132, 323, 367, 576, 579, 972
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	2 cut(s)	89, 446
BmeT110I	CYCGRG	1 cut(s)	596
BmgT120I	GGNCC	4 cut(s)	35, 89, 121, 446
BmiI	GGNNCC	6 cut(s)	155, 471, 516, 573, 828, 897
BmrFI	CCNGG	1 cut(s)	285
BmrI	ACTGGG	1 cut(s)	667
BmsI	GCATC	1 cut(s)	778
BmuI	ACTGGG	1 cut(s)	667
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	121
BpuMI	CCSGG	1 cut(s)	285
BsaHI	GRCGYC	1 cut(s)	303
BsaJI	CCNNGG	5 cut(s)	38, 117, 284, 822, 891
BsaWI	WCCGGW	2 cut(s)	137, 898
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 880, 910
Bsc4I	CCNNNNNNNGG	1 cut(s)	892
Bse118I	RCCGGY	1 cut(s)	150
Bse1I	ACTGG	3 cut(s)	104, 673, 845
BseAI	TCCGGA	1 cut(s)	898
BseDI	CCNNGG	5 cut(s)	38, 117, 284, 822, 891
BseGI	GGATG	4 cut(s)	228, 725, 793, 919
BseLI	CCNNNNNNNGG	1 cut(s)	892
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	3 cut(s)	104, 673, 845
BseRI	GAGGAG	3 cut(s)	227, 230, 367
BseXI	GCAGC	4 cut(s)	142, 333, 377, 564
BshFI	GGCC	2 cut(s)	37, 123
BshNI	GGYRCC	1 cut(s)	571
BsiHKAI	GWGCWC	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	596
BsiSI	CCGG	4 cut(s)	138, 151, 284, 899
BslFI	GGGAC	1 cut(s)	655
BslI	CCNNNNNNNGG	1 cut(s)	892
BsmAI	GTCTC	2 cut(s)	90, 412
BsmFI	GGGAC	1 cut(s)	655
BsnI	GGCC	2 cut(s)	37, 123
BsoBI	CYCGRG	1 cut(s)	596
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp13I	TCCGGA	1 cut(s)	898
Bsp143I	GATC	3 cut(s)	113, 558, 937
Bsp19I	CCATGG	3 cut(s)	38, 822, 891
BspACI	CCGC	3 cut(s)	87, 533, 575
BspANI	GGCC	2 cut(s)	37, 123
BspCNI	CTCAG	1 cut(s)	547
BspEI	TCCGGA	1 cut(s)	898
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	6 cut(s)	155, 471, 516, 573, 828, 897
BspMAI	CTGCAG	1 cut(s)	696
BspPI	GGATC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	571
BsrFI	RCCGGY	1 cut(s)	150
BsrI	ACTGG	3 cut(s)	104, 673, 845
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	5 cut(s)	38, 117, 284, 822, 891
BssMI	GATC	3 cut(s)	113, 558, 937
BssNI	GRCGYC	1 cut(s)	303
BssT1I	CCWWGG	4 cut(s)	38, 117, 822, 891
Bst6I	CTCTTC	2 cut(s)	12, 326
BstACI	GRCGYC	1 cut(s)	303
BstC8I	GCNNGC	4 cut(s)	152, 240, 326, 339
BstDEI	CTNAG	1 cut(s)	555
BstDSI	CCRYGG	3 cut(s)	38, 822, 891
BstF5I	GGATG	4 cut(s)	228, 725, 793, 919
BstKTI	GATC	3 cut(s)	116, 561, 940
BstMAI	GTCTC	2 cut(s)	90, 412
BstMBI	GATC	3 cut(s)	113, 558, 937
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 334, 861
BstNSI	RCATGY	2 cut(s)	775, 934
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	2 cut(s)	350, 692
BstV1I	GCAGC	4 cut(s)	142, 333, 377, 564
BstV2I	GAAGAC	1 cut(s)	60
BstXI	CCANNNNNNTGG	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	2 cut(s)	37, 123
BtgI	CCRYGG	3 cut(s)	38, 822, 891
BtsCI	GGATG	4 cut(s)	228, 725, 793, 919
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	4 cut(s)	152, 240, 326, 339
CciI	TCATGA	1 cut(s)	418
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	4 cut(s)	35, 89, 121, 446
Csp6I	GTAC	1 cut(s)	779
CviAII	CATG	9 cut(s)	39, 74, 419, 522, 632, 772, 823, 892, 931
CviQI	GTAC	1 cut(s)	779
DdeI	CTNAG	1 cut(s)	555
DpnI	GATC	3 cut(s)	115, 560, 939
DpnII	GATC	3 cut(s)	113, 558, 937
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
Eam1104I	CTCTTC	2 cut(s)	12, 326
EarI	CTCTTC	2 cut(s)	12, 326
Ecl136II	GAGCTC	1 cut(s)	105
Eco130I	CCWWGG	4 cut(s)	38, 117, 822, 891
Eco24I	GRGCYC	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	89, 446
Eco53kI	GAGCTC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	449
Eco88I	CYCGRG	1 cut(s)	596
EcoICRI	GAGCTC	1 cut(s)	105
EcoO109I	RGGNCCY	2 cut(s)	121, 446
EcoT14I	CCWWGG	4 cut(s)	38, 117, 822, 891
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	4 cut(s)	38, 117, 822, 891
FaeI	CATG	9 cut(s)	42, 77, 422, 525, 635, 775, 826, 895, 934
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	1 cut(s)	655
FatI	CATG	9 cut(s)	38, 73, 418, 521, 631, 771, 822, 891, 930
FbaI	TGATCA	1 cut(s)	937
Fnu4HI	GCNGC	6 cut(s)	131, 322, 366, 575, 578, 971
FokI	GGATG	4 cut(s)	235, 712, 800, 926
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	6 cut(s)	131, 322, 366, 575, 578, 971
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	6 cut(s)	131, 322, 366, 575, 578, 971
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	37, 123
HapII	CCGG	4 cut(s)	138, 151, 284, 899
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	9 cut(s)	42, 77, 422, 525, 635, 775, 826, 895, 934
HinfI	GANTC	4 cut(s)	346, 599, 668, 947
HpaII	CCGG	4 cut(s)	138, 151, 284, 899
HphI	GGTGA	3 cut(s)	238, 522, 631
Hpy188I	TCNGA	6 cut(s)	176, 493, 556, 730, 796, 957
Hpy188III	TCNNGA	5 cut(s)	307, 419, 785, 899, 922
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	2 cut(s)	37, 393
HpyCH4IV	ACGT	2 cut(s)	303, 371
HpyCH4V	TGCA	4 cut(s)	130, 198, 238, 694
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 334, 861
HpyF3I	CTNAG	1 cut(s)	555
HpySE526I	ACGT	2 cut(s)	303, 371
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	9 cut(s)	42, 77, 422, 525, 635, 775, 826, 895, 934
Kpn2I	TCCGGA	1 cut(s)	898
KroI	GCCGGC	1 cut(s)	150
KroNI	GCCGGC	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	3 cut(s)	113, 558, 937
LmnI	GCTCC	8 cut(s)	102, 110, 159, 177, 318, 475, 796, 901
Lsp1109I	GCAGC	4 cut(s)	142, 333, 377, 564
LweI	GCATC	1 cut(s)	778
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	2 cut(s)	303, 371
MaeIII	GTNAC	1 cut(s)	528
MalI	GATC	3 cut(s)	115, 560, 939
MboI	GATC	3 cut(s)	113, 558, 937
MboII	GAAGA	6 cut(s)	29, 65, 91, 199, 343, 446
MfeI	CAATTG	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	5 cut(s)	200, 245, 310, 476, 481
MlyI	GAGTC	3 cut(s)	608, 677, 941
MmeI	TCCRAC	2 cut(s)	199, 891
MroI	TCCGGA	1 cut(s)	898
MroNI	GCCGGC	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	816
MseI	TTAA	1 cut(s)	591
MslI	CAYNNNNRTG	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	577
MspI	CCGG	4 cut(s)	138, 151, 284, 899
MspR9I	CCNGG	1 cut(s)	285
MunI	CAATTG	1 cut(s)	481
MwoI	GCNNNNNNNGC	3 cut(s)	269, 334, 861
NaeI	GCCGGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	285
NcoI	CCATGG	3 cut(s)	38, 822, 891
NdeII	GATC	3 cut(s)	113, 558, 937
NgoMIV	GCCGGC	1 cut(s)	150
NlaIII	CATG	9 cut(s)	42, 77, 422, 525, 635, 775, 826, 895, 934
NlaIV	GGNNCC	6 cut(s)	155, 471, 516, 573, 828, 897
NmuCI	GTSAC	1 cut(s)	528
NspI	RCATGY	2 cut(s)	775, 934
PagI	TCATGA	1 cut(s)	418
PciI	ACATGT	2 cut(s)	771, 930
PdiI	GCCGGC	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	816
PfeI	GAWTC	1 cut(s)	346
PflMI	CCANNNNNTGG	1 cut(s)	892
PkrI	GCNGC	6 cut(s)	132, 323, 367, 576, 579, 972
PleI	GAGTC	3 cut(s)	607, 676, 941
PpsI	GAGTC	3 cut(s)	607, 676, 941
PpuMI	RGGWCCY	1 cut(s)	446
PscI	ACATGT	2 cut(s)	771, 930
Psp124BI	GAGCTC	1 cut(s)	107
Psp5II	RGGWCCY	1 cut(s)	446
PspN4I	GGNNCC	6 cut(s)	155, 471, 516, 573, 828, 897
PspPI	GGNCC	4 cut(s)	35, 89, 121, 446
PspPPI	RGGWCCY	1 cut(s)	446
PstI	CTGCAG	1 cut(s)	696
RsaI	GTAC	1 cut(s)	780
RsaNI	GTAC	1 cut(s)	779
RseI	CAYNNNNRTG	1 cut(s)	566
SacI	GAGCTC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	6 cut(s)	131, 322, 366, 575, 578, 971
Sau3AI	GATC	3 cut(s)	113, 558, 937
Sau96I	GGNCC	4 cut(s)	35, 89, 121, 446
SchI	GAGTC	3 cut(s)	608, 677, 941
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	1 cut(s)	107
SfaNI	GCATC	1 cut(s)	778
SfcI	CTRYAG	2 cut(s)	350, 692
SinI	GGWCC	2 cut(s)	89, 446
SmiMI	CAYNNNNRTG	1 cut(s)	566
Sse9I	AATT	5 cut(s)	200, 245, 310, 476, 481
SsiI	CCGC	3 cut(s)	87, 533, 575
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	1 cut(s)	107
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	4 cut(s)	38, 117, 822, 891
TaiI	ACGT	2 cut(s)	306, 374
TaqI	TCGA	5 cut(s)	112, 506, 756, 768, 882
TasI	AATT	5 cut(s)	200, 245, 310, 476, 481
TauI	GCSGC	1 cut(s)	577
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	528
TseI	GCWGC	5 cut(s)	130, 321, 365, 577, 970
Tsp45I	GTSAC	1 cut(s)	528
TspDTI	ATGAA	2 cut(s)	407, 648
TspGWI	ACGGA	4 cut(s)	146, 308, 400, 507
TspRI	CASTG	1 cut(s)	213
Van91I	CCANNNNNTGG	1 cut(s)	892
VpaK11BI	GGWCC	2 cut(s)	89, 446
XapI	RAATTY	3 cut(s)	200, 310, 476
XceI	RCATGY	2 cut(s)	775, 934
XcmI	CCANNNNNNNNNTGG	1 cut(s)	543
XmnI	GAANNNNTTC	1 cut(s)	816
XspI	CTAG	1 cut(s)	342
ZraI	GACGTC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.