Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012305

Physical Location & Seq

Genomic Coordinates Reverse (-)

29787035 .. 29788807

Gene Structure 1773 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00308280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAAGGCAAAAGGGAAGAAGGTATAAGAAAAGGACCATGGAAAGCAGAGGAGGATGAAGTGCTTCTCAACCATGTGAAGAAATGTGGCCCTAGAGACTGGAGCTCCATTCGATCCAAAGGCCTCTTGCAGCGTACCGGAAAGTCCTGCCGTCTCCGTTGGGTTAATAAGCTTAGACCCAACTTGAAGAATGGGTGTAAATTTTCACTAGAGGAGGAGAGGGTGGTGATAGAGTTGCAAGCACAATTTGGGAACAAATGGGCAAAAATAGCAACCCATTTGCCCGGAAGAACTGACAATGATGTCAAGAACTTTTGGAGTAGCAGGCAGAAGAGACTGGCTAGGATTCTGCAGACATCAACAGCAGCAATCACACCCTCCAAATCACACAAAAACAGAAGGGAAATTCCTGTTTACCATGATGAGGTTCCCACCTTGGAGGAGTCAGAGTATAGAGAGAATGCAAAACACTTTTTTTTCAAAGAGATTCCAAAGTTCAGTTGTTCATCAGAGGGAGAATCATCATCTCAGGCTGCATCATGCTCATCACCTTGCATTGGGAACTCTGATGCAATCCAAATGGTGCCACTCCCAGATCTTCTTGACTCCAAGTTGCTTGGTTTCGAAGCAAACCCTGTCCAGCAGGAGCTCGCTCTACCTGAGAAGAATCTATGGATTGAGTCCCAACCTCTAATCCCTTTCCTAGAGAACCCACAACCCCAAACAGACCTCGAATTCTCATCTGACACCCAAGAACTCCTGAAACTTGACTTTGACATGTTCACAACTCTGGATGCTGAACTTGGCAAACAACTCGACATCGAGCCACCATTTCTTGAGACAGTAGGAAGCTGTGGAAATGTTGAAGGGGAAAAGATTGACAACCCAATAACCCCGGACTGCGTCTTCGATGACTTTCCAGCCGACATGTTTGATCAAATGGAGCCGCTGCCAAATGGCTCAAATCCATCTGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0044770 GO:0044839 GO:0045893 GO:0045935 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048518 GO:0048522 GO:0048555 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0055046 GO:0055047 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

326

Amino Acids

36.91

Weight (kDa)

5.0

Isoelectric Point (pI)

55.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	11 - 56	2.6e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	14 - 65	1e-10	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 107	9.8e-13	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60460
fragaria_vesca	FvH4_1g25630 FvH4_7g09670
malus_domestica	MD00G1058800.v1.1 MD07G1101000.v1.1
prunus_persica	Prupe.2G124100_v2.0.a1
pyrus_communis	pycom02g18160
rosa_chinensis	RchiOBHm_Chr1g0346571
rosa_laevigata	RLG00000028792
rosa_multiflora	Rmu_sc0002640.1_g000007 Rmu_sc0006463.1_g000019
rosa_roxburghii	Rroxscaffold_4G00308280
rosa_rugosa	Rorug01G0181200 Rorug01G0181300
rosa_samantha	Rh1AG200400 Rh1BG166700 Rh1CG185400 Rh1DG197500
rosa_wichuraiana	Rw1G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	583
AciI	CCGC	1 cut(s)	947
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	3 cut(s)	200, 405, 734
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	424, 557
AflIII	ACRYGT	2 cut(s)	777, 927
AgsI	TTSAA	3 cut(s)	187, 481, 866
AluBI	AGCT	4 cut(s)	105, 172, 649, 852
AluI	AGCT	4 cut(s)	105, 172, 649, 852
Alw21I	GWGCWC	2 cut(s)	107, 651
Alw26I	GTCTC	4 cut(s)	90, 158, 328, 833
AlwI	GGATC	1 cut(s)	108
AoxI	GGCC	2 cut(s)	88, 121
ApeKI	GCWGC	4 cut(s)	130, 365, 533, 949
ApoI	RAATTY	3 cut(s)	200, 405, 734
ArsI	GACNNNNNNTTYG	2 cut(s)	890, 922
Asp700I	GAANNNNTTC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	35, 89
AsuC2I	CCSGG	2 cut(s)	285, 896
AsuHPI	GGTGA	2 cut(s)	238, 540
AsuII	TTCGAA	1 cut(s)	624
AvaII	GGWCC	1 cut(s)	35
BanI	GGYRCC	1 cut(s)	583
BanII	GRGCYC	2 cut(s)	107, 651
BbsI	GAAGAC	1 cut(s)	898
Bbv12I	GWGCWC	2 cut(s)	107, 651
BbvI	GCAGC	4 cut(s)	142, 377, 520, 936
BccI	CCATC	1 cut(s)	976
BceAI	ACGGC	1 cut(s)	135
BcgI	CGANNNNNNTGC	2 cut(s)	796, 830
BclI	TGATCA	1 cut(s)	934
BcnI	CCSGG	2 cut(s)	285, 896
BcoDI	GTCTC	4 cut(s)	90, 158, 328, 833
BfaI	CTAG	4 cut(s)	93, 209, 342, 704
BfmI	CTRYAG	1 cut(s)	350
BglII	AGATCT	1 cut(s)	595
BisI	GCNGC	5 cut(s)	131, 366, 534, 947, 950
BlsI	GCNGC	5 cut(s)	132, 367, 535, 948, 951
Bme1390I	CCNGG	2 cut(s)	285, 896
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	35, 89
BmiI	GGNNCC	3 cut(s)	429, 585, 945
BmrFI	CCNGG	2 cut(s)	285, 896
BmsI	GCATC	3 cut(s)	545, 559, 784
BpiI	GAAGAC	1 cut(s)	898
BpmI	CTGGAG	1 cut(s)	121
Bpu14I	TTCGAA	1 cut(s)	624
BpuEI	CTTGAG	1 cut(s)	857
BpuMI	CCSGG	2 cut(s)	285, 896
BsaJI	CCNNGG	3 cut(s)	38, 435, 894
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 434, 464
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 557
Bse1I	ACTGG	2 cut(s)	104, 342
BseDI	CCNNGG	3 cut(s)	38, 435, 894
BseGI	GGATG	2 cut(s)	61, 799
BseLI	CCNNNNNNNGG	2 cut(s)	424, 557
BseMII	CTCAG	2 cut(s)	542, 651
BseNI	ACTGG	2 cut(s)	104, 342
BseRI	GAGGAG	4 cut(s)	65, 227, 230, 455
BseXI	GCAGC	4 cut(s)	142, 377, 520, 936
BshFI	GGCC	2 cut(s)	90, 123
BshNI	GGYRCC	1 cut(s)	583
BsiHKAI	GWGCWC	2 cut(s)	107, 651
BsiSI	CCGG	3 cut(s)	138, 285, 896
BslFI	GGGAC	1 cut(s)	667
BslI	CCNNNNNNNGG	2 cut(s)	424, 557
BsmAI	GTCTC	4 cut(s)	90, 158, 328, 833
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	667
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	2 cut(s)	90, 123
Bsp119I	TTCGAA	1 cut(s)	624
Bsp1286I	GDGCHC	2 cut(s)	107, 651
Bsp143I	GATC	3 cut(s)	113, 595, 934
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	1 cut(s)	947
BspANI	GGCC	2 cut(s)	90, 123
BspCNI	CTCAG	2 cut(s)	541, 652
BspLI	GGNNCC	3 cut(s)	429, 585, 945
BspMAI	CTGCAG	1 cut(s)	354
BspPI	GGATC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	624
BspT107I	GGYRCC	1 cut(s)	583
BsrI	ACTGG	2 cut(s)	104, 342
BssECI	CCNNGG	3 cut(s)	38, 435, 894
BssMI	GATC	3 cut(s)	113, 595, 934
BssT1I	CCWWGG	2 cut(s)	38, 435
Bst4CI	ACNGT	1 cut(s)	844
Bst6I	CTCTTC	1 cut(s)	326
BstBI	TTCGAA	1 cut(s)	624
BstC8I	GCNNGC	3 cut(s)	240, 326, 651
BstDEI	CTNAG	3 cut(s)	173, 528, 660
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	61, 799
BstKTI	GATC	3 cut(s)	116, 598, 937
BstMAI	GTCTC	4 cut(s)	90, 158, 328, 833
BstMBI	GATC	3 cut(s)	113, 595, 934
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNSI	RCATGY	2 cut(s)	781, 931
BstSCI	CCNGG	2 cut(s)	283, 894
BstSFI	CTRYAG	1 cut(s)	350
BstV1I	GCAGC	4 cut(s)	142, 377, 520, 936
BstV2I	GAAGAC	1 cut(s)	898
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BsuRI	GGCC	2 cut(s)	90, 123
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	61, 799
Cac8I	GCNNGC	3 cut(s)	240, 326, 651
Cfr13I	GGNCC	2 cut(s)	35, 89
CseI	GACGC	1 cut(s)	892
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	6 cut(s)	39, 74, 419, 540, 778, 928
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	3 cut(s)	173, 528, 660
DpnI	GATC	3 cut(s)	115, 597, 936
DpnII	GATC	3 cut(s)	113, 595, 934
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Ecl136II	GAGCTC	2 cut(s)	105, 649
Eco130I	CCWWGG	2 cut(s)	38, 435
Eco147I	AGGCCT	1 cut(s)	123
Eco24I	GRGCYC	2 cut(s)	107, 651
Eco47I	GGWCC	1 cut(s)	35
Eco53kI	GAGCTC	2 cut(s)	105, 649
EcoICRI	GAGCTC	2 cut(s)	105, 649
EcoRI	GAATTC	1 cut(s)	734
EcoT14I	CCWWGG	2 cut(s)	38, 435
EcoT38I	GRGCYC	2 cut(s)	107, 651
ErhI	CCWWGG	2 cut(s)	38, 435
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	6 cut(s)	42, 77, 422, 543, 781, 931
FaiI	YATR	9 cut(s)	26, 40, 75, 420, 453, 541, 673, 779, 929
FaqI	GGGAC	1 cut(s)	667
FatI	CATG	6 cut(s)	38, 73, 418, 539, 777, 927
FbaI	TGATCA	1 cut(s)	934
Fnu4HI	GCNGC	5 cut(s)	131, 366, 534, 947, 950
FokI	GGATG	2 cut(s)	68, 806
FriOI	GRGCYC	2 cut(s)	107, 651
Fsp4HI	GCNGC	5 cut(s)	131, 366, 534, 947, 950
FspBI	CTAG	4 cut(s)	93, 209, 342, 704
GluI	GCNGC	5 cut(s)	131, 366, 534, 947, 950
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	90, 123
HapII	CCGG	3 cut(s)	138, 285, 896
HgaI	GACGC	1 cut(s)	892
Hin1II	CATG	6 cut(s)	42, 77, 422, 543, 781, 931
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	7 cut(s)	346, 443, 487, 518, 605, 667, 680
HpaII	CCGG	3 cut(s)	138, 285, 896
HphI	GGTGA	2 cut(s)	238, 540
Hpy166II	GTNNAC	2 cut(s)	415, 783
Hpy188I	TCNGA	5 cut(s)	448, 511, 568, 745, 973
Hpy188III	TCNNGA	5 cut(s)	307, 602, 760, 791, 836
Hpy8I	GTNNAC	2 cut(s)	415, 783
HpyAV	CCTTC	3 cut(s)	14, 393, 860
HpyCH4III	ACNGT	1 cut(s)	844
HpyCH4V	TGCA	7 cut(s)	130, 238, 352, 464, 536, 555, 572
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	3 cut(s)	173, 528, 660
Hsp92II	CATG	6 cut(s)	42, 77, 422, 543, 781, 931
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	3 cut(s)	113, 595, 934
LmnI	GCTCC	4 cut(s)	102, 110, 646, 943
Lsp1109I	GCAGC	4 cut(s)	142, 377, 520, 936
LweI	GCATC	3 cut(s)	545, 559, 784
MaeI	CTAG	4 cut(s)	93, 209, 342, 704
MalI	GATC	3 cut(s)	115, 597, 936
MboI	GATC	3 cut(s)	113, 595, 934
MboII	GAAGA	8 cut(s)	29, 91, 199, 300, 343, 590, 676, 898
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	2 cut(s)	107, 651
MluCI	AATT	4 cut(s)	200, 245, 405, 734
MlyI	GAGTC	3 cut(s)	452, 599, 689
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	949
MspI	CCGG	3 cut(s)	138, 285, 896
MspR9I	CCNGG	2 cut(s)	285, 896
Mva1269I	GAATGC	1 cut(s)	466
MwoI	GCNNNNNNNGC	1 cut(s)	269
NciI	CCSGG	2 cut(s)	285, 896
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	3 cut(s)	113, 595, 934
NlaIII	CATG	6 cut(s)	42, 77, 422, 543, 781, 931
NlaIV	GGNNCC	3 cut(s)	429, 585, 945
NspI	RCATGY	2 cut(s)	781, 931
NspV	TTCGAA	1 cut(s)	624
PceI	AGGCCT	1 cut(s)	123
PciI	ACATGT	2 cut(s)	777, 927
PctI	GAATGC	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	4 cut(s)	346, 487, 518, 667
PflFI	GACNNNGTC	1 cut(s)	902
PkrI	GCNGC	5 cut(s)	132, 367, 535, 948, 951
PleI	GAGTC	3 cut(s)	451, 599, 688
PpsI	GAGTC	3 cut(s)	451, 599, 688
PscI	ACATGT	2 cut(s)	777, 927
Psp124BI	GAGCTC	2 cut(s)	107, 651
PspN4I	GGNNCC	3 cut(s)	429, 585, 945
PspPI	GGNCC	2 cut(s)	35, 89
PstI	CTGCAG	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	595
PsyI	GACNNNGTC	1 cut(s)	902
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SacI	GAGCTC	2 cut(s)	107, 651
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	5 cut(s)	131, 366, 534, 947, 950
Sau3AI	GATC	3 cut(s)	113, 595, 934
Sau96I	GGNCC	2 cut(s)	35, 89
SchI	GAGTC	3 cut(s)	452, 599, 689
ScrFI	CCNGG	2 cut(s)	285, 896
SduI	GDGCHC	2 cut(s)	107, 651
SfaNI	GCATC	3 cut(s)	545, 559, 784
SfcI	CTRYAG	1 cut(s)	350
SfuI	TTCGAA	1 cut(s)	624
SinI	GGWCC	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	836
SmoI	CTYRAG	1 cut(s)	836
Sse9I	AATT	4 cut(s)	200, 245, 405, 734
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	947
SspMI	CTAG	4 cut(s)	93, 209, 342, 704
SstI	GAGCTC	2 cut(s)	107, 651
StuI	AGGCCT	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	283, 894
StyI	CCWWGG	2 cut(s)	38, 435
TaaI	ACNGT	1 cut(s)	844
TaqI	TCGA	6 cut(s)	112, 624, 732, 816, 822, 909
TasI	AATT	4 cut(s)	200, 245, 405, 734
TauI	GCSGC	1 cut(s)	949
TfiI	GAWTC	4 cut(s)	346, 487, 518, 667
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseI	GCWGC	4 cut(s)	130, 365, 533, 949
TspDTI	ATGAA	2 cut(s)	72, 495
TspGWI	ACGGA	1 cut(s)	146
Tth111I	GACNNNGTC	1 cut(s)	902
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	3 cut(s)	200, 405, 734
XceI	RCATGY	2 cut(s)	781, 931
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	4 cut(s)	93, 209, 342, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.