Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012305

Physical Location & Seq

Genomic Coordinates Forward (+)

17481343 .. 17483221

Gene Structure 1879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g25630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAAGGCAAAAGAGAGGAAGGTATAAGAAAAGGACCATGGAAAGCAGAGGAGGATCAAGTGCTTCTGAACCATGTTAAGAAATGTGGTCCGAAAGACTGGAGCTCCATTCGATCCAAAGGCCTATTGCAACGTACCGGAAAGTCTTGCCGTCTCCGTTGGGTTAATAAGCTTCGACCCAACTTGAAGAATGGGTGCAAATTTTCACTAGAGGAGGAGAGGGTGGTGATAGAGTTGCAAGCACAATTTGGAAACAAATGGGCAAAAATAGCAACCCATTTGGCTGGAAGAACTGACAATGATGTCAAGAACTTTTGGAGTAGCAGGCAGAAGAGACTGGCTAGGATTCTACAGACATCAACAGCAGCAATAACACCCTCCAAATCACACAAAAATAGAAGGGAAATTCCTGTTTACCACGATAAGGTTCCCACCTTGGAGGAGTCGGAGTATAGAGAGAATCCAAAGCCCTTCTTTTTCAAAGAGATTCCAAAATTCAGTTGTTCATCAGAGGGAGAGTCATCATTACAGGCAGCATCATGCTCATCACGTTGCATTGGCAACTCTGAAATGGTGCCAGTCCCTGAACTTGTTGACTCCAAGTTGCTTGGTTTTGAAGCAGACCCTGTTCAGCAGGAGCTTGCTCTACCTGCTGAGAAGAATCTATGGATTGAGTCCCAACCTCTAATCCCTTTCCTAGAGAACCCACAACCACAAACAGACCTCGAATTCTCATCAGACACCCAAGAACTCCTGAAACTTGACTTCGACATGTTGACAACTCTGGATGCTGAACTTAGCAAACAACTCGACATCGGGCCACCATTTCTTGAGCCGGTAGGAAATGTTGAAGGGGACAAGATTGACGACCCAATAACCCCGGACTGCCTCTTCGATGACTTTCCAGCTGACATGTTTGATCAAATCGAGCCGCTATCTCATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0044770 GO:0044839 GO:0045893 GO:0045935 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048518 GO:0048522 GO:0048555 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0055046 GO:0055047 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

316

Amino Acids

35.79

Weight (kDa)

5.23

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	11 - 56	1.8e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	14 - 65	5.6e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 107	1.4e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60460
fragaria_vesca	FvH4_1g25630 FvH4_7g09670
malus_domestica	MD00G1058800.v1.1 MD07G1101000.v1.1
prunus_persica	Prupe.2G124100_v2.0.a1
pyrus_communis	pycom02g18160
rosa_chinensis	RchiOBHm_Chr1g0346571
rosa_laevigata	RLG00000028792
rosa_multiflora	Rmu_sc0002640.1_g000007 Rmu_sc0006463.1_g000019
rosa_roxburghii	Rroxscaffold_4G00308280
rosa_rugosa	Rorug01G0181200 Rorug01G0181300
rosa_samantha	Rh1AG200400 Rh1BG166700 Rh1CG185400 Rh1DG197500
rosa_wichuraiana	Rw1G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
Acc36I	ACCTGC	1 cut(s)	658
AccB1I	GGYRCC	1 cut(s)	574
AciI	CCGC	1 cut(s)	932
AclWI	GGATC	2 cut(s)	63, 108
AcsI	RAATTY	4 cut(s)	200, 405, 494, 728
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	424
AflIII	ACRYGT	2 cut(s)	771, 912
AgsI	TTSAA	4 cut(s)	187, 481, 617, 851
AluBI	AGCT	4 cut(s)	105, 172, 640, 908
AluI	AGCT	4 cut(s)	105, 172, 640, 908
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	2 cut(s)	158, 328
AlwI	GGATC	2 cut(s)	63, 108
AlwNI	CAGNNNCTG	2 cut(s)	584, 626
AoxI	GGCC	2 cut(s)	121, 818
ApeKI	GCWGC	2 cut(s)	365, 533
ApoI	RAATTY	4 cut(s)	200, 405, 494, 728
ArsI	GACNNNNNNTTYG	2 cut(s)	875, 907
AspS9I	GGNCC	3 cut(s)	35, 89, 818
AsuC2I	CCSGG	1 cut(s)	881
AsuHPI	GGTGA	1 cut(s)	238
AvaII	GGWCC	2 cut(s)	35, 89
BanI	GGYRCC	1 cut(s)	574
BanII	GRGCYC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	377, 545
BceAI	ACGGC	1 cut(s)	135
BcgI	CGANNNNNNTGC	2 cut(s)	790, 824
BclI	TGATCA	1 cut(s)	919
BcnI	CCSGG	1 cut(s)	881
BcoDI	GTCTC	2 cut(s)	158, 328
BfaI	CTAG	3 cut(s)	209, 342, 698
BfmI	CTRYAG	1 cut(s)	350
BfuAI	ACCTGC	1 cut(s)	658
BisI	GCNGC	3 cut(s)	366, 534, 932
BlsI	GCNGC	3 cut(s)	367, 535, 933
Bme1390I	CCNGG	1 cut(s)	881
Bme18I	GGWCC	2 cut(s)	35, 89
BmgT120I	GGNCC	3 cut(s)	35, 89, 818
BmiI	GGNNCC	2 cut(s)	429, 576
BmrFI	CCNGG	1 cut(s)	881
BmsI	GCATC	2 cut(s)	545, 778
BpmI	CTGGAG	1 cut(s)	121
BpuEI	CTTGAG	1 cut(s)	851
BpuMI	CCSGG	1 cut(s)	881
BsaJI	CCNNGG	3 cut(s)	38, 435, 879
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 434, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse118I	RCCGGY	1 cut(s)	835
Bse1I	ACTGG	3 cut(s)	104, 342, 578
BseDI	CCNNGG	3 cut(s)	38, 435, 879
BseGI	GGATG	1 cut(s)	793
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	645
BseNI	ACTGG	3 cut(s)	104, 342, 578
BseRI	GAGGAG	4 cut(s)	65, 227, 230, 455
BseXI	GCAGC	2 cut(s)	377, 545
BshFI	GGCC	2 cut(s)	123, 820
BshNI	GGYRCC	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	138, 836, 881
BslFI	GGGAC	3 cut(s)	566, 661, 869
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	2 cut(s)	158, 328
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	3 cut(s)	566, 661, 869
BsnI	GGCC	2 cut(s)	123, 820
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp143I	GATC	3 cut(s)	55, 113, 919
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	1 cut(s)	932
BspANI	GGCC	2 cut(s)	123, 820
BspCNI	CTCAG	1 cut(s)	646
BspHI	TCATGA	1 cut(s)	940
BspLI	GGNNCC	2 cut(s)	429, 576
BspMI	ACCTGC	1 cut(s)	658
BspPI	GGATC	2 cut(s)	63, 108
BspT107I	GGYRCC	1 cut(s)	574
BsrFI	RCCGGY	1 cut(s)	835
BsrI	ACTGG	3 cut(s)	104, 342, 578
BssAI	RCCGGY	1 cut(s)	835
BssECI	CCNNGG	3 cut(s)	38, 435, 879
BssMI	GATC	3 cut(s)	55, 113, 919
BssT1I	CCWWGG	2 cut(s)	38, 435
Bst6I	CTCTTC	2 cut(s)	326, 896
BstC8I	GCNNGC	3 cut(s)	240, 326, 642
BstDEI	CTNAG	2 cut(s)	654, 797
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	793
BstKTI	GATC	3 cut(s)	58, 116, 922
BstMAI	GTCTC	2 cut(s)	158, 328
BstMBI	GATC	3 cut(s)	55, 113, 919
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 650
BstNSI	RCATGY	2 cut(s)	775, 916
BstSCI	CCNGG	1 cut(s)	879
BstSFI	CTRYAG	1 cut(s)	350
BstV1I	GCAGC	2 cut(s)	377, 545
BstXI	CCANNNNNNTGG	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	123, 820
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	793
BveI	ACCTGC	1 cut(s)	658
Cac8I	GCNNGC	3 cut(s)	240, 326, 642
CaiI	CAGNNNCTG	2 cut(s)	584, 626
CciI	TCATGA	1 cut(s)	940
Cfr10I	RCCGGY	1 cut(s)	835
Cfr13I	GGNCC	3 cut(s)	35, 89, 818
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	6 cut(s)	39, 74, 540, 772, 913, 941
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	2 cut(s)	654, 797
DpnI	GATC	3 cut(s)	57, 115, 921
DpnII	GATC	3 cut(s)	55, 113, 919
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
Eam1104I	CTCTTC	2 cut(s)	326, 896
EarI	CTCTTC	2 cut(s)	326, 896
Ecl136II	GAGCTC	1 cut(s)	105
Eco130I	CCWWGG	2 cut(s)	38, 435
Eco147I	AGGCCT	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	35, 89
Eco53kI	GAGCTC	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	105
EcoRI	GAATTC	1 cut(s)	728
EcoT14I	CCWWGG	2 cut(s)	38, 435
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	2 cut(s)	38, 435
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	6 cut(s)	42, 77, 543, 775, 916, 944
FaiI	YATR	9 cut(s)	26, 40, 75, 453, 541, 667, 773, 914, 942
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FaqI	GGGAC	3 cut(s)	566, 661, 869
FatI	CATG	6 cut(s)	38, 73, 539, 771, 912, 940
FbaI	TGATCA	1 cut(s)	919
Fnu4HI	GCNGC	3 cut(s)	366, 534, 932
FokI	GGATG	1 cut(s)	800
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	3 cut(s)	366, 534, 932
FspBI	CTAG	3 cut(s)	209, 342, 698
GluI	GCNGC	3 cut(s)	366, 534, 932
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	123, 820
HapII	CCGG	3 cut(s)	138, 836, 881
Hin1II	CATG	6 cut(s)	42, 77, 543, 775, 916, 944
HincII	GTYRAC	2 cut(s)	595, 777
HindII	GTYRAC	2 cut(s)	595, 777
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	8 cut(s)	346, 443, 460, 487, 518, 596, 661, 674
HpaII	CCGG	3 cut(s)	138, 836, 881
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	3 cut(s)	415, 595, 777
Hpy188I	TCNGA	6 cut(s)	69, 93, 448, 511, 568, 739
Hpy188III	TCNNGA	5 cut(s)	307, 754, 785, 830, 941
Hpy8I	GTNNAC	3 cut(s)	415, 595, 777
HpyAV	CCTTC	4 cut(s)	14, 393, 481, 845
HpyCH4IV	ACGT	2 cut(s)	133, 550
HpyCH4V	TGCA	4 cut(s)	130, 198, 238, 555
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 650
HpyF3I	CTNAG	2 cut(s)	654, 797
HpySE526I	ACGT	2 cut(s)	133, 550
Hsp92II	CATG	6 cut(s)	42, 77, 543, 775, 916, 944
Ksp22I	TGATCA	1 cut(s)	919
Kzo9I	GATC	3 cut(s)	55, 113, 919
LmnI	GCTCC	3 cut(s)	102, 110, 637
Lsp1109I	GCAGC	2 cut(s)	377, 545
LweI	GCATC	2 cut(s)	545, 778
MaeI	CTAG	3 cut(s)	209, 342, 698
MaeII	ACGT	2 cut(s)	133, 550
MalI	GATC	3 cut(s)	57, 115, 921
MboI	GATC	3 cut(s)	55, 113, 919
MboII	GAAGA	5 cut(s)	199, 300, 343, 670, 883
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	5 cut(s)	200, 245, 405, 494, 728
MlyI	GAGTC	4 cut(s)	452, 527, 590, 683
MmeI	TCCRAC	1 cut(s)	426
MseI	TTAA	2 cut(s)	78, 165
MspA1I	CMGCKG	1 cut(s)	908
MspI	CCGG	3 cut(s)	138, 836, 881
MspR9I	CCNGG	1 cut(s)	881
MwoI	GCNNNNNNNGC	2 cut(s)	269, 650
NciI	CCSGG	1 cut(s)	881
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	3 cut(s)	55, 113, 919
NlaIII	CATG	6 cut(s)	42, 77, 543, 775, 916, 944
NlaIV	GGNNCC	2 cut(s)	429, 576
NspI	RCATGY	2 cut(s)	775, 916
PagI	TCATGA	1 cut(s)	940
PceI	AGGCCT	1 cut(s)	123
PciI	ACATGT	2 cut(s)	771, 912
PfeI	GAWTC	4 cut(s)	346, 460, 487, 661
PkrI	GCNGC	3 cut(s)	367, 535, 933
PleI	GAGTC	4 cut(s)	451, 526, 590, 682
PpsI	GAGTC	4 cut(s)	451, 526, 590, 682
PscI	ACATGT	2 cut(s)	771, 912
Psp124BI	GAGCTC	1 cut(s)	107
PspN4I	GGNNCC	2 cut(s)	429, 576
PspPI	GGNCC	3 cut(s)	35, 89, 818
PstNI	CAGNNNCTG	2 cut(s)	584, 626
PvuII	CAGCTG	1 cut(s)	908
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	78, 165
SatI	GCNGC	3 cut(s)	366, 534, 932
Sau3AI	GATC	3 cut(s)	55, 113, 919
Sau96I	GGNCC	3 cut(s)	35, 89, 818
SchI	GAGTC	4 cut(s)	452, 527, 590, 683
ScrFI	CCNGG	1 cut(s)	881
SduI	GDGCHC	1 cut(s)	107
SfaNI	GCATC	2 cut(s)	545, 778
SfcI	CTRYAG	1 cut(s)	350
SinI	GGWCC	2 cut(s)	35, 89
SmlI	CTYRAG	1 cut(s)	830
SmoI	CTYRAG	1 cut(s)	830
Sse9I	AATT	5 cut(s)	200, 245, 405, 494, 728
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	932
SspMI	CTAG	3 cut(s)	209, 342, 698
SstI	GAGCTC	1 cut(s)	107
StuI	AGGCCT	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	879
StyI	CCWWGG	2 cut(s)	38, 435
TaiI	ACGT	2 cut(s)	136, 553
TaqI	TCGA	7 cut(s)	112, 175, 726, 768, 810, 894, 927
TasI	AATT	5 cut(s)	200, 245, 405, 494, 728
TauI	GCSGC	1 cut(s)	934
TfiI	GAWTC	4 cut(s)	346, 460, 487, 661
Tru1I	TTAA	2 cut(s)	78, 165
Tru9I	TTAA	2 cut(s)	78, 165
TseI	GCWGC	2 cut(s)	365, 533
TspDTI	ATGAA	1 cut(s)	495
TspGWI	ACGGA	1 cut(s)	146
VpaK11BI	GGWCC	2 cut(s)	35, 89
XapI	RAATTY	4 cut(s)	200, 405, 494, 728
XceI	RCATGY	2 cut(s)	775, 916
XspI	CTAG	3 cut(s)	209, 342, 698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.