Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0012305

Physical Location & Seq

Genomic Coordinates Reverse (-)

38071165 .. 38072919

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG200400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAAGGCAAAAGGGAAGAAGGTATAAGAAAAGGACCATGGAAAGCAGAGGAGGATGAAGTGCTTCTCAACCATGTGAAGAAATGTGGCCCTAGAGACTGGAGCTCCATTCGATCCAAAGGCCTCTTGCAGCGTACCGGAAAGTCCTGCCGTCTCCGTTGGGTTAATAAGCTTCGACCCAACTTGAAGAATTGTTCATCAGAGGGAGAATCATCATCTCAGGCTGCATCATGCTCATCACCTTGCATTGGGAACTCTGATGCAATCCAAATGGTGCAACTCCCAGATCTTCTTGACTCCAAGTTGCTTGGTTTCGAAGCAAACCCCGTCCAGCAGGAGCTCGCTCTACCTGAGAAGAATTTATGGATTGAATCCCAACCTCTAATCCCTTTCCTTGAGAACCCACAACCCCAAACAGACCTCGAATTCTCATCTGACACCCAAGAACTCCTGAAACTTGACTTTGACATGTTCACATCTCTGGATGCTGAACTCAGCAAACAACTCGACGTCGAGCCACCGTTTCTTGAGCCAGTAGGAAGCTGTGGAAATGTTGAAGGGGAAAAGATTGACAACCCAATAACCCCGGACTGCGTCTTCGATGACTTTCCAGCCGACATGTTTGATCAAATTGAGCCGCTGCCAAATGGCTCAAATCCATCTGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0044770 GO:0044839 GO:0045893 GO:0045935 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048518 GO:0048522 GO:0048555 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0055046 GO:0055047 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

223

Amino Acids

24.85

Weight (kDa)

4.42

Isoelectric Point (pI)

55.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	11 - 56	1.4e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	14 - 64	1.1e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60460
fragaria_vesca	FvH4_1g25630 FvH4_7g09670
malus_domestica	MD00G1058800.v1.1 MD07G1101000.v1.1
prunus_persica	Prupe.2G124100_v2.0.a1
pyrus_communis	pycom02g18160
rosa_chinensis	RchiOBHm_Chr1g0346571
rosa_laevigata	RLG00000028792
rosa_multiflora	Rmu_sc0002640.1_g000007 Rmu_sc0006463.1_g000019
rosa_roxburghii	Rroxscaffold_4G00308280
rosa_rugosa	Rorug01G0181200 Rorug01G0181300
rosa_samantha	Rh1AG200400 Rh1BG166700 Rh1CG185400 Rh1DG197500
rosa_wichuraiana	Rw1G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	513
AciI	CCGC	1 cut(s)	638
AclWI	GGATC	1 cut(s)	108
AcsI	RAATTY	2 cut(s)	358, 425
AcyI	GRCGYC	1 cut(s)	510
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	1 cut(s)	248
AflIII	ACRYGT	2 cut(s)	468, 618
AgsI	TTSAA	3 cut(s)	187, 371, 557
AluBI	AGCT	4 cut(s)	105, 172, 340, 543
AluI	AGCT	4 cut(s)	105, 172, 340, 543
Alw21I	GWGCWC	2 cut(s)	107, 342
Alw26I	GTCTC	2 cut(s)	90, 158
AlwI	GGATC	1 cut(s)	108
AoxI	GGCC	2 cut(s)	88, 121
ApeKI	GCWGC	3 cut(s)	130, 224, 640
ApoI	RAATTY	2 cut(s)	358, 425
ArsI	GACNNNNNNTTYG	2 cut(s)	581, 613
Asp700I	GAANNNNTTC	1 cut(s)	63
AspS9I	GGNCC	2 cut(s)	35, 89
AsuC2I	CCSGG	1 cut(s)	587
AsuHPI	GGTGA	1 cut(s)	231
AsuII	TTCGAA	1 cut(s)	315
AvaII	GGWCC	1 cut(s)	35
BanII	GRGCYC	2 cut(s)	107, 342
BbsI	GAAGAC	1 cut(s)	589
Bbv12I	GWGCWC	2 cut(s)	107, 342
BbvI	GCAGC	3 cut(s)	142, 211, 627
BccI	CCATC	1 cut(s)	667
BceAI	ACGGC	1 cut(s)	135
BcgI	CGANNNNNNTGC	2 cut(s)	487, 521
BclI	TGATCA	1 cut(s)	625
BcnI	CCSGG	1 cut(s)	587
BcoDI	GTCTC	2 cut(s)	90, 158
BfaI	CTAG	1 cut(s)	93
BglII	AGATCT	1 cut(s)	286
BisI	GCNGC	4 cut(s)	131, 225, 638, 641
BlsI	GCNGC	4 cut(s)	132, 226, 639, 642
Bme1390I	CCNGG	1 cut(s)	587
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	2 cut(s)	35, 89
BmrFI	CCNGG	1 cut(s)	587
BmsI	GCATC	3 cut(s)	236, 250, 475
BpiI	GAAGAC	1 cut(s)	589
BpmI	CTGGAG	1 cut(s)	121
Bpu14I	TTCGAA	1 cut(s)	315
BpuEI	CTTGAG	2 cut(s)	416, 548
BpuMI	CCSGG	1 cut(s)	587
BsaHI	GRCGYC	1 cut(s)	510
BsaJI	CCNNGG	2 cut(s)	38, 585
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	104, 533
BseDI	CCNNGG	2 cut(s)	38, 585
BseGI	GGATG	2 cut(s)	61, 490
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	3 cut(s)	233, 342, 508
BseNI	ACTGG	2 cut(s)	104, 533
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	3 cut(s)	142, 211, 627
BshFI	GGCC	2 cut(s)	90, 123
BsiHKAI	GWGCWC	2 cut(s)	107, 342
BsiSI	CCGG	2 cut(s)	138, 587
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	90, 158
BsmBI	CGTCTC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	90, 123
Bsp119I	TTCGAA	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	107, 342
Bsp143I	GATC	3 cut(s)	113, 286, 625
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	1 cut(s)	638
BspANI	GGCC	2 cut(s)	90, 123
BspCNI	CTCAG	3 cut(s)	232, 343, 507
BspPI	GGATC	1 cut(s)	108
BspT104I	TTCGAA	1 cut(s)	315
BsrI	ACTGG	2 cut(s)	104, 533
BssECI	CCNNGG	2 cut(s)	38, 585
BssMI	GATC	3 cut(s)	113, 286, 625
BssNI	GRCGYC	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	522
BstACI	GRCGYC	1 cut(s)	510
BstBI	TTCGAA	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	3 cut(s)	219, 351, 494
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	61, 490
BstKTI	GATC	3 cut(s)	116, 289, 628
BstMAI	GTCTC	2 cut(s)	90, 158
BstMBI	GATC	3 cut(s)	113, 286, 625
BstNSI	RCATGY	2 cut(s)	472, 622
BstSCI	CCNGG	1 cut(s)	585
BstV1I	GCAGC	3 cut(s)	142, 211, 627
BstV2I	GAAGAC	1 cut(s)	589
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	90, 123
BtgI	CCRYGG	1 cut(s)	38
BtsCI	GGATG	2 cut(s)	61, 490
Cac8I	GCNNGC	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	35, 89
CseI	GACGC	1 cut(s)	583
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	5 cut(s)	39, 74, 231, 469, 619
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	3 cut(s)	219, 351, 494
DpnI	GATC	3 cut(s)	115, 288, 627
DpnII	GATC	3 cut(s)	113, 286, 625
Ecl136II	GAGCTC	2 cut(s)	105, 340
Eco130I	CCWWGG	1 cut(s)	38
Eco147I	AGGCCT	1 cut(s)	123
Eco24I	GRGCYC	2 cut(s)	107, 342
Eco47I	GGWCC	1 cut(s)	35
Eco53kI	GAGCTC	2 cut(s)	105, 340
EcoICRI	GAGCTC	2 cut(s)	105, 340
EcoRI	GAATTC	1 cut(s)	425
EcoT14I	CCWWGG	1 cut(s)	38
EcoT38I	GRGCYC	2 cut(s)	107, 342
ErhI	CCWWGG	1 cut(s)	38
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	5 cut(s)	42, 77, 234, 472, 622
FaiI	YATR	7 cut(s)	26, 40, 75, 232, 364, 470, 620
FatI	CATG	5 cut(s)	38, 73, 230, 468, 618
FbaI	TGATCA	1 cut(s)	625
Fnu4HI	GCNGC	4 cut(s)	131, 225, 638, 641
FokI	GGATG	2 cut(s)	68, 497
FriOI	GRGCYC	2 cut(s)	107, 342
Fsp4HI	GCNGC	4 cut(s)	131, 225, 638, 641
FspBI	CTAG	1 cut(s)	93
GluI	GCNGC	4 cut(s)	131, 225, 638, 641
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	90, 123
HapII	CCGG	2 cut(s)	138, 587
HgaI	GACGC	1 cut(s)	583
Hin1I	GRCGYC	1 cut(s)	510
Hin1II	CATG	5 cut(s)	42, 77, 234, 472, 622
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	3 cut(s)	209, 296, 371
HpaII	CCGG	2 cut(s)	138, 587
HphI	GGTGA	1 cut(s)	231
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188I	TCNGA	4 cut(s)	202, 259, 436, 664
Hpy188III	TCNNGA	4 cut(s)	293, 451, 482, 527
Hpy8I	GTNNAC	1 cut(s)	474
Hpy99I	CGWCG	2 cut(s)	512, 515
HpyAV	CCTTC	2 cut(s)	14, 551
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	5 cut(s)	130, 227, 246, 263, 277
HpyF3I	CTNAG	3 cut(s)	219, 351, 494
HpySE526I	ACGT	1 cut(s)	510
Hsp92I	GRCGYC	1 cut(s)	510
Hsp92II	CATG	5 cut(s)	42, 77, 234, 472, 622
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	3 cut(s)	113, 286, 625
LmnI	GCTCC	3 cut(s)	102, 110, 337
Lsp1109I	GCAGC	3 cut(s)	142, 211, 627
LweI	GCATC	3 cut(s)	236, 250, 475
MaeI	CTAG	1 cut(s)	93
MaeII	ACGT	1 cut(s)	510
MalI	GATC	3 cut(s)	115, 288, 627
MboI	GATC	3 cut(s)	113, 286, 625
MboII	GAAGA	6 cut(s)	29, 91, 199, 281, 367, 589
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	2 cut(s)	107, 342
MluCI	AATT	4 cut(s)	190, 358, 425, 630
MlyI	GAGTC	1 cut(s)	290
MnlI	CCTC	6 cut(s)	43, 46, 134, 196, 390, 431
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	640
MspI	CCGG	2 cut(s)	138, 587
MspR9I	CCNGG	1 cut(s)	587
NciI	CCSGG	1 cut(s)	587
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	3 cut(s)	113, 286, 625
NlaIII	CATG	5 cut(s)	42, 77, 234, 472, 622
NspI	RCATGY	2 cut(s)	472, 622
NspV	TTCGAA	1 cut(s)	315
PceI	AGGCCT	1 cut(s)	123
PciI	ACATGT	2 cut(s)	468, 618
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	2 cut(s)	209, 371
PflFI	GACNNNGTC	1 cut(s)	593
PkrI	GCNGC	4 cut(s)	132, 226, 639, 642
PleI	GAGTC	1 cut(s)	290
PpsI	GAGTC	1 cut(s)	290
PscI	ACATGT	2 cut(s)	468, 618
Psp124BI	GAGCTC	2 cut(s)	107, 342
PspPI	GGNCC	2 cut(s)	35, 89
PsuI	RGATCY	1 cut(s)	286
PsyI	GACNNNGTC	1 cut(s)	593
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SacI	GAGCTC	2 cut(s)	107, 342
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	4 cut(s)	131, 225, 638, 641
Sau3AI	GATC	3 cut(s)	113, 286, 625
Sau96I	GGNCC	2 cut(s)	35, 89
SchI	GAGTC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	587
SduI	GDGCHC	2 cut(s)	107, 342
SfaNI	GCATC	3 cut(s)	236, 250, 475
SfuI	TTCGAA	1 cut(s)	315
SinI	GGWCC	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	395, 527
SmoI	CTYRAG	2 cut(s)	395, 527
Sse9I	AATT	4 cut(s)	190, 358, 425, 630
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	1 cut(s)	638
SspMI	CTAG	1 cut(s)	93
SstI	GAGCTC	2 cut(s)	107, 342
StuI	AGGCCT	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	585
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	522
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	7 cut(s)	112, 175, 315, 423, 507, 513, 600
TasI	AATT	4 cut(s)	190, 358, 425, 630
TauI	GCSGC	1 cut(s)	640
TfiI	GAWTC	2 cut(s)	209, 371
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseI	GCWGC	3 cut(s)	130, 224, 640
TspDTI	ATGAA	2 cut(s)	72, 186
TspGWI	ACGGA	1 cut(s)	146
Tth111I	GACNNNGTC	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	2 cut(s)	358, 425
XceI	RCATGY	2 cut(s)	472, 622
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	1 cut(s)	93
ZraI	GACGTC	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.