Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012305

Physical Location & Seq

Genomic Coordinates Reverse (-)

9263544 .. 9265605

Gene Structure 2062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGAAGGCAAAAGGGATGAAGGTATAAGAAAAGGACCATGGAAAGCGGAGGAAGATGAAGTGCTTCTCAACCATGTCAAGAAATGTGGTCCGAGGGACTGGAGCTCCATTCGATCCAAAGGCCTCTTGCAGCGTACCGGAAAGTCTTGCCGTCTCCGTTGGGTTAATAAGCTTCGACCCAATTTGAAGAATGGGTGCAAATTTTCACTAGAGGAGGAGAGGGTGGTGATAGAGTTGCAAGCACAATTTGGGAACAAATGGGCAAAAATTGCAACCCATTTGGCTGGAAGAACTGACAATGATGTCAAGAACTTTTGGAGTAGCAGGCAGAAGAGACTGGCTAGGATTCTGCAGACATCAACAGCAGCAATCACACCCTCCAAATCACACAAAAACAGAAGGGAAATTCCTGTTTATCATGATGAGGTTCCCACCTTGGAGGAGCCGGAGTATAGAGAGAATCCAAAGCACTTCTTTTTCAAAGAGATTCCAAAATTCAGTTGTTCATCAGAGGGAGAGTCATCATCGCAGGCTGCATCATGCTCATCACCATGCATTGGAAACTCCGATGCGCTCCAAATGGTGCCAGTCCCTGATCTTCTTGACTCCAAGTTTCTTGGTTTTGAAGCAGACCCTGTTCAGCAGGAGCCCGCACTACCTGAGAAGAATCTATGGATCGAGTCCCAACCTCTAATCCCGTTCCTGGAGAACCAACAACCCCAAACAGACCTTGAATTCTCATCAGACCAAGAACTCCTGAAACTGGACTTCGACATGCTCACAACTCTGGATGCTGAACTTGGCAAACAACTCGACATCGGACCACCATTTCTTGAGCCAGTAGGAAGCTGTGGAAATGTTGAAGGGGAAATGATTGACGACCCAATAACCCCGGACTGCGTCTTCGATGACTTTCCAGCAGACATGTTTGATCAAATCGAGCTGCTGCCGAATGGTTCAAATCCATCTCATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0044770 GO:0044839 GO:0045893 GO:0045935 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048518 GO:0048522 GO:0048555 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0055046 GO:0055047 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

326

Amino Acids

36.75

Weight (kDa)

4.98

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	11 - 56	2.6e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	14 - 65	9.9e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 107	1.5e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60460
fragaria_vesca	FvH4_1g25630 FvH4_7g09670
malus_domestica	MD00G1058800.v1.1 MD07G1101000.v1.1
prunus_persica	Prupe.2G124100_v2.0.a1
pyrus_communis	pycom02g18160
rosa_chinensis	RchiOBHm_Chr1g0346571
rosa_laevigata	RLG00000028792
rosa_multiflora	Rmu_sc0002640.1_g000007 Rmu_sc0006463.1_g000019
rosa_roxburghii	Rroxscaffold_4G00308280
rosa_rugosa	Rorug01G0181200 Rorug01G0181300
rosa_samantha	Rh1AG200400 Rh1BG166700 Rh1CG185400 Rh1DG197500
rosa_wichuraiana	Rw1G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	583
AccB7I	CCANNNNNTGG	1 cut(s)	557
AciI	CCGC	2 cut(s)	47, 651
AclWI	GGATC	2 cut(s)	108, 683
AcsI	RAATTY	4 cut(s)	200, 405, 494, 734
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	3 cut(s)	557, 703, 763
AflIII	ACRYGT	1 cut(s)	924
AgsI	TTSAA	6 cut(s)	187, 481, 626, 734, 863, 960
AjnI	CCWGG	1 cut(s)	702
AluBI	AGCT	4 cut(s)	105, 172, 849, 943
AluI	AGCT	4 cut(s)	105, 172, 849, 943
Alw21I	GWGCWC	1 cut(s)	107
Alw26I	GTCTC	2 cut(s)	158, 328
AlwI	GGATC	2 cut(s)	108, 683
AlwNI	CAGNNNCTG	2 cut(s)	593, 635
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	5 cut(s)	130, 365, 533, 943, 946
ApoI	RAATTY	4 cut(s)	200, 405, 494, 734
ArsI	GACNNNNNNTTYG	2 cut(s)	887, 919
Asp700I	GAANNNNTTC	1 cut(s)	63
AspLEI	GCGC	1 cut(s)	574
AspS9I	GGNCC	3 cut(s)	35, 89, 821
AsuC2I	CCSGG	1 cut(s)	893
AsuHPI	GGTGA	2 cut(s)	238, 540
AvaII	GGWCC	3 cut(s)	35, 89, 821
BanI	GGYRCC	1 cut(s)	583
BanII	GRGCYC	2 cut(s)	107, 651
BbsI	GAAGAC	1 cut(s)	895
Bbv12I	GWGCWC	1 cut(s)	107
BbvI	GCAGC	5 cut(s)	142, 377, 520, 930, 933
BccI	CCATC	1 cut(s)	973
BceAI	ACGGC	1 cut(s)	135
BcgI	CGANNNNNNTGC	2 cut(s)	793, 827
BciT130I	CCWGG	1 cut(s)	704
BclI	TGATCA	1 cut(s)	931
BcnI	CCSGG	1 cut(s)	893
BcoDI	GTCTC	2 cut(s)	158, 328
BfaI	CTAG	2 cut(s)	209, 342
BfmI	CTRYAG	1 cut(s)	350
BisI	GCNGC	5 cut(s)	131, 366, 534, 944, 947
BlsI	GCNGC	5 cut(s)	132, 367, 535, 945, 948
Bme1390I	CCNGG	2 cut(s)	704, 893
Bme18I	GGWCC	3 cut(s)	35, 89, 821
BmgT120I	GGNCC	3 cut(s)	35, 89, 821
BmiI	GGNNCC	4 cut(s)	429, 444, 585, 648
BmrFI	CCNGG	2 cut(s)	704, 893
BmsI	GCATC	3 cut(s)	545, 559, 781
BpiI	GAAGAC	1 cut(s)	895
BpmI	CTGGAG	2 cut(s)	121, 725
BpuEI	CTTGAG	1 cut(s)	854
BpuMI	CCSGG	1 cut(s)	893
BsaJI	CCNNGG	4 cut(s)	38, 92, 435, 891
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 434, 464
Bsc4I	CCNNNNNNNGG	3 cut(s)	557, 703, 763
Bse1I	ACTGG	5 cut(s)	104, 342, 587, 768, 839
BseBI	CCWGG	1 cut(s)	704
BseDI	CCNNGG	4 cut(s)	38, 92, 435, 891
BseGI	GGATG	2 cut(s)	22, 796
BseLI	CCNNNNNNNGG	3 cut(s)	557, 703, 763
BseMII	CTCAG	1 cut(s)	651
BseNI	ACTGG	5 cut(s)	104, 342, 587, 768, 839
BseRI	GAGGAG	3 cut(s)	227, 230, 455
BseXI	GCAGC	5 cut(s)	142, 377, 520, 930, 933
BshFI	GGCC	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	583
BsiHKAI	GWGCWC	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	138, 446, 893
BslFI	GGGAC	3 cut(s)	110, 575, 667
BslI	CCNNNNNNNGG	3 cut(s)	557, 703, 763
BsmAI	GTCTC	2 cut(s)	158, 328
BsmBI	CGTCTC	1 cut(s)	158
BsmFI	GGGAC	3 cut(s)	110, 575, 667
BsnI	GGCC	1 cut(s)	123
Bsp1286I	GDGCHC	2 cut(s)	107, 651
Bsp143I	GATC	4 cut(s)	113, 595, 675, 931
Bsp19I	CCATGG	1 cut(s)	38
BspACI	CCGC	2 cut(s)	47, 651
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	652
BspHI	TCATGA	2 cut(s)	418, 970
BspLI	GGNNCC	4 cut(s)	429, 444, 585, 648
BspMAI	CTGCAG	1 cut(s)	354
BspPI	GGATC	2 cut(s)	108, 683
BspT107I	GGYRCC	1 cut(s)	583
BsrI	ACTGG	5 cut(s)	104, 342, 587, 768, 839
BssECI	CCNNGG	4 cut(s)	38, 92, 435, 891
BssMI	GATC	4 cut(s)	113, 595, 675, 931
BssT1I	CCWWGG	2 cut(s)	38, 435
Bst2UI	CCWGG	1 cut(s)	704
Bst6I	CTCTTC	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	4 cut(s)	240, 326, 531, 651
BstDEI	CTNAG	1 cut(s)	660
BstDSI	CCRYGG	1 cut(s)	38
BstF5I	GGATG	2 cut(s)	22, 796
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	4 cut(s)	116, 598, 678, 934
BstMAI	GTCTC	2 cut(s)	158, 328
BstMBI	GATC	4 cut(s)	113, 595, 675, 931
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	704
BstNSI	RCATGY	2 cut(s)	778, 928
BstSCI	CCNGG	2 cut(s)	702, 891
BstSFI	CTRYAG	1 cut(s)	350
BstV1I	GCAGC	5 cut(s)	142, 377, 520, 930, 933
BstV2I	GAAGAC	1 cut(s)	895
BstXI	CCANNNNNNTGG	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	2 cut(s)	22, 796
Cac8I	GCNNGC	4 cut(s)	240, 326, 531, 651
CaiI	CAGNNNCTG	2 cut(s)	593, 635
CciI	TCATGA	2 cut(s)	418, 970
CfoI	GCGC	1 cut(s)	574
Cfr13I	GGNCC	3 cut(s)	35, 89, 821
CseI	GACGC	1 cut(s)	889
Csp6I	GTAC	1 cut(s)	135
CspCI	CAANNNNNGTGG	2 cut(s)	67, 102
CviAII	CATG	8 cut(s)	39, 74, 419, 540, 552, 775, 925, 971
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	1 cut(s)	660
DpnI	GATC	4 cut(s)	115, 597, 677, 933
DpnII	GATC	4 cut(s)	113, 595, 675, 931
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	105
Eco130I	CCWWGG	2 cut(s)	38, 435
Eco147I	AGGCCT	1 cut(s)	123
Eco24I	GRGCYC	2 cut(s)	107, 651
Eco47I	GGWCC	3 cut(s)	35, 89, 821
Eco53kI	GAGCTC	1 cut(s)	105
EcoICRI	GAGCTC	1 cut(s)	105
EcoRI	GAATTC	1 cut(s)	734
EcoRII	CCWGG	1 cut(s)	702
EcoT14I	CCWWGG	2 cut(s)	38, 435
EcoT22I	ATGCAT	1 cut(s)	557
EcoT38I	GRGCYC	2 cut(s)	107, 651
ErhI	CCWWGG	2 cut(s)	38, 435
Esp3I	CGTCTC	1 cut(s)	158
FaeI	CATG	8 cut(s)	42, 77, 422, 543, 555, 778, 928, 974
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FaqI	GGGAC	3 cut(s)	110, 575, 667
FatI	CATG	8 cut(s)	38, 73, 418, 539, 551, 774, 924, 970
FauI	CCCGC	1 cut(s)	658
FbaI	TGATCA	1 cut(s)	931
Fnu4HI	GCNGC	5 cut(s)	131, 366, 534, 944, 947
FokI	GGATG	2 cut(s)	29, 803
FriOI	GRGCYC	2 cut(s)	107, 651
Fsp4HI	GCNGC	5 cut(s)	131, 366, 534, 944, 947
FspBI	CTAG	2 cut(s)	209, 342
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	5 cut(s)	131, 366, 534, 944, 947
GsuI	CTGGAG	2 cut(s)	121, 725
HaeIII	GGCC	1 cut(s)	123
HapII	CCGG	3 cut(s)	138, 446, 893
HgaI	GACGC	1 cut(s)	889
HhaI	GCGC	1 cut(s)	574
Hin1II	CATG	8 cut(s)	42, 77, 422, 543, 555, 778, 928, 974
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HindIII	AAGCTT	1 cut(s)	170
HinfI	GANTC	7 cut(s)	346, 460, 487, 518, 605, 667, 680
HpaII	CCGG	3 cut(s)	138, 446, 893
HphI	GGTGA	2 cut(s)	238, 540
Hpy188I	TCNGA	5 cut(s)	93, 511, 568, 745, 821
Hpy188III	TCNNGA	8 cut(s)	79, 307, 419, 602, 757, 788, 833, 971
HpyAV	CCTTC	3 cut(s)	14, 393, 857
HpyCH4V	TGCA	7 cut(s)	130, 198, 238, 272, 352, 536, 555
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	660
Hsp92II	CATG	8 cut(s)	42, 77, 422, 543, 555, 778, 928, 974
HspAI	GCGC	1 cut(s)	572
Ksp22I	TGATCA	1 cut(s)	931
Kzo9I	GATC	4 cut(s)	113, 595, 675, 931
LmnI	GCTCC	5 cut(s)	102, 110, 442, 579, 646
Lsp1109I	GCAGC	5 cut(s)	142, 377, 520, 930, 933
LweI	GCATC	3 cut(s)	545, 559, 781
MaeI	CTAG	2 cut(s)	209, 342
MalI	GATC	4 cut(s)	115, 597, 677, 933
MboI	GATC	4 cut(s)	113, 595, 675, 931
MboII	GAAGA	7 cut(s)	65, 199, 300, 343, 590, 676, 895
MhlI	GDGCHC	2 cut(s)	107, 651
MluCI	AATT	7 cut(s)	181, 200, 245, 267, 405, 494, 734
MlyI	GAGTC	3 cut(s)	527, 599, 689
Mph1103I	ATGCAT	1 cut(s)	557
MroXI	GAANNNNTTC	1 cut(s)	63
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	1 cut(s)	550
MspI	CCGG	3 cut(s)	138, 446, 893
MspR9I	CCNGG	2 cut(s)	704, 893
MvaI	CCWGG	1 cut(s)	704
MwoI	GCNNNNNNNGC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	893
NcoI	CCATGG	1 cut(s)	38
NdeII	GATC	4 cut(s)	113, 595, 675, 931
NlaIII	CATG	8 cut(s)	42, 77, 422, 543, 555, 778, 928, 974
NlaIV	GGNNCC	4 cut(s)	429, 444, 585, 648
NsiI	ATGCAT	1 cut(s)	557
NspI	RCATGY	2 cut(s)	778, 928
PagI	TCATGA	2 cut(s)	418, 970
PceI	AGGCCT	1 cut(s)	123
PciI	ACATGT	1 cut(s)	924
PdmI	GAANNNNTTC	1 cut(s)	63
PfeI	GAWTC	4 cut(s)	346, 460, 487, 667
PflFI	GACNNNGTC	1 cut(s)	899
PflMI	CCANNNNNTGG	1 cut(s)	557
PfoI	TCCNGGA	1 cut(s)	702
PkrI	GCNGC	5 cut(s)	132, 367, 535, 945, 948
PleI	GAGTC	3 cut(s)	526, 599, 688
PpsI	GAGTC	3 cut(s)	526, 599, 688
PscI	ACATGT	1 cut(s)	924
Psp124BI	GAGCTC	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	702
PspGI	CCWGG	1 cut(s)	702
PspN4I	GGNNCC	4 cut(s)	429, 444, 585, 648
PspPI	GGNCC	3 cut(s)	35, 89, 821
PstI	CTGCAG	1 cut(s)	354
PstNI	CAGNNNCTG	2 cut(s)	593, 635
PsyI	GACNNNGTC	1 cut(s)	899
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	550
SacI	GAGCTC	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	5 cut(s)	131, 366, 534, 944, 947
Sau3AI	GATC	4 cut(s)	113, 595, 675, 931
Sau96I	GGNCC	3 cut(s)	35, 89, 821
SchI	GAGTC	3 cut(s)	527, 599, 689
ScrFI	CCNGG	2 cut(s)	704, 893
SduI	GDGCHC	2 cut(s)	107, 651
SfaNI	GCATC	3 cut(s)	545, 559, 781
SfcI	CTRYAG	1 cut(s)	350
SinI	GGWCC	3 cut(s)	35, 89, 821
SmiMI	CAYNNNNRTG	1 cut(s)	550
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
Sse9I	AATT	7 cut(s)	181, 200, 245, 267, 405, 494, 734
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	2 cut(s)	47, 651
SspMI	CTAG	2 cut(s)	209, 342
SstI	GAGCTC	1 cut(s)	107
StuI	AGGCCT	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	702, 891
StyI	CCWWGG	2 cut(s)	38, 435
TaqI	TCGA	7 cut(s)	112, 175, 678, 771, 813, 906, 939
TasI	AATT	7 cut(s)	181, 200, 245, 267, 405, 494, 734
TfiI	GAWTC	4 cut(s)	346, 460, 487, 667
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseI	GCWGC	5 cut(s)	130, 365, 533, 943, 946
TspDTI	ATGAA	3 cut(s)	33, 72, 495
TspGWI	ACGGA	1 cut(s)	146
Tth111I	GACNNNGTC	1 cut(s)	899
Van91I	CCANNNNNTGG	1 cut(s)	557
VpaK11BI	GGWCC	3 cut(s)	35, 89, 821
XapI	RAATTY	4 cut(s)	200, 405, 494, 734
XceI	RCATGY	2 cut(s)	778, 928
XmnI	GAANNNNTTC	1 cut(s)	63
XspI	CTAG	2 cut(s)	209, 342
Zsp2I	ATGCAT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.