Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0012305

Physical Location & Seq

Genomic Coordinates Reverse (-)

11188975 .. 11191111

Gene Structure 2137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1101000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAAGGTAAAAAAGAAGAGGGTATAAGGAAAGGGCCATGGAAGGCAGAGGAAGACGAAGTGCTGTTAAAGCATGTGAAGAAATGTGGTCCGAGAGACTGGAGCTCCATTCGATCCAAGGGTCTCTTGCAGCGTACCGGAAAGTCGTGCCGGCTCCGTTGGGTCAATAAGCTCCGTCCCAACTTGAAGAATGGGTGCAAATTTTCGGTGGAGGAGGAGAGGGTGGTGATAGAGTTGCAAGCACAATTTGGGAACAAATGGGCAAGAATAGCGACCTATTTGCCGGGGAGGACGGACAATGACGTCAAGAATTTTTGGAGCAGCAGGCAGAAGAGGCTGGCTAGGATTCTGCAGACATCAGCAGCAGCACCAGCCACACCCTCCTCCAAATCACATAAAACCAAAGGGGAAGTCTCTGGTTTTCATGAGCTTCCCACCATTGTGGAGGCTACAAAATTCAATTGCCCATCGGAGGGAGAACCATCGTCGCAGGCGCAACCATGCTTGTCACCGCCACCTTACGTTCGGAACTCCGAGATCATCAAAATGGTGCCGCTGCCGGATATTGTTAAGCCCAAGTCTCTTTGCTTCGAAACAAACCCCGTTCAACATGAGCTCCCCATAACTGATAAGGATCCATGGACTGATTCCCACTCTGTAATCCCCTTCCTGCAGAACCCACAGCCCCAAACAGACCAAATATTCTCATCCGAAACGCAAGAATTCTTGGCAAGGTTCGACCCCTATTTCGACATGTTAGGACCTCTGGATGCTTTGGAGCTTGGAAACGGAGGAGAACCACTTGTCATGGAGCCTCCATTGTTTGAACCAGTAGGAAGCTGTCTAAGTTGTGAAGGGGAGAAAATCGACCATACCATGACTCCGGATTGTGTGTTCGATGACTTCCCGACAGACATGTTTGATCAATTTGACCCGCTTCCGAACACATCAGGATCAGGGCAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000280 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007049 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0044703 GO:0044770 GO:0044839 GO:0045893 GO:0045935 GO:0048229 GO:0048232 GO:0048235 GO:0048285 GO:0048518 GO:0048522 GO:0048555 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0055046 GO:0055047 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0140014 GO:0140110 GO:1901363 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

323

Amino Acids

36.16

Weight (kDa)

5.75

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	11 - 56	1.8e-12	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	14 - 65	6e-11	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 107	2.6e-12	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60460
fragaria_vesca	FvH4_1g25630 FvH4_7g09670
malus_domestica	MD00G1058800.v1.1 MD07G1101000.v1.1
prunus_persica	Prupe.2G124100_v2.0.a1
pyrus_communis	pycom02g18160
rosa_chinensis	RchiOBHm_Chr1g0346571
rosa_laevigata	RLG00000028792
rosa_multiflora	Rmu_sc0002640.1_g000007 Rmu_sc0006463.1_g000019
rosa_roxburghii	Rroxscaffold_4G00308280
rosa_rugosa	Rorug01G0181200 Rorug01G0181300
rosa_samantha	Rh1AG200400 Rh1BG166700 Rh1CG185400 Rh1DG197500
rosa_wichuraiana	Rw1G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	302
AatII	GACGTC	1 cut(s)	306
AccB1I	GGYRCC	1 cut(s)	550
AccIII	TCCGGA	1 cut(s)	883
AciI	CCGC	3 cut(s)	512, 554, 935
AclWI	GGATC	4 cut(s)	108, 629, 642, 961
AcsI	RAATTY	4 cut(s)	200, 310, 455, 722
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	472, 473
AflIII	ACRYGT	2 cut(s)	753, 915
AgsI	TTSAA	4 cut(s)	187, 460, 608, 827
AleI	CACNNNNGTG	1 cut(s)	440
AloI	GAACNNNNNNTCC	2 cut(s)	878, 910
AluBI	AGCT	6 cut(s)	105, 172, 430, 616, 781, 840
AluI	AGCT	6 cut(s)	105, 172, 430, 616, 781, 840
Alw21I	GWGCWC	2 cut(s)	107, 618
Alw26I	GTCTC	4 cut(s)	90, 128, 418, 585
AlwI	GGATC	4 cut(s)	108, 629, 642, 961
Aor13HI	TCCGGA	1 cut(s)	883
AoxI	GGCC	1 cut(s)	35
ApeKI	GCWGC	6 cut(s)	130, 321, 362, 365, 556, 961
ApoI	RAATTY	4 cut(s)	200, 310, 455, 722
ArsI	GACNNNNNNTTYG	4 cut(s)	396, 428, 731, 763
AspLEI	GCGC	1 cut(s)	496
AspS9I	GGNCC	3 cut(s)	35, 89, 761
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	238, 501
AsuII	TTCGAA	1 cut(s)	591
AvaII	GGWCC	2 cut(s)	89, 761
BamHI	GGATCC	1 cut(s)	634
BanI	GGYRCC	1 cut(s)	550
BanII	GRGCYC	2 cut(s)	107, 618
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	2 cut(s)	107, 618
BbvI	GCAGC	5 cut(s)	142, 333, 374, 377, 543
BccI	CCATC	2 cut(s)	475, 490
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BclI	TGATCA	1 cut(s)	922
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	4 cut(s)	90, 128, 418, 585
BfaI	CTAG	1 cut(s)	342
BfmI	CTRYAG	2 cut(s)	350, 671
BisI	GCNGC	7 cut(s)	131, 322, 363, 366, 554, 557, 962
BlsI	GCNGC	7 cut(s)	132, 323, 364, 367, 555, 558, 963
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	2 cut(s)	89, 761
BmgT120I	GGNCC	3 cut(s)	35, 89, 761
BmiI	GGNNCC	4 cut(s)	155, 552, 636, 813
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	760
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	121
Bpu14I	TTCGAA	1 cut(s)	591
BpuMI	CCSGG	1 cut(s)	285
BsaBI	GATNNNNATC	1 cut(s)	633
BsaHI	GRCGYC	1 cut(s)	303
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	4 cut(s)	38, 117, 284, 638
BsaWI	WCCGGW	2 cut(s)	137, 883
BsaXI	ACNNNNNCTCC	6 cut(s)	89, 119, 600, 630, 865, 895
Bsc4I	CCNNNNNNNGG	2 cut(s)	472, 473
Bse118I	RCCGGY	1 cut(s)	150
Bse1I	ACTGG	2 cut(s)	104, 830
Bse8I	GATNNNNATC	1 cut(s)	633
BseAI	TCCGGA	1 cut(s)	883
BseDI	CCNNGG	4 cut(s)	38, 117, 284, 638
BseGI	GGATG	2 cut(s)	707, 775
BseJI	GATNNNNATC	1 cut(s)	633
BseLI	CCNNNNNNNGG	2 cut(s)	472, 473
BseNI	ACTGG	2 cut(s)	104, 830
BseRI	GAGGAG	4 cut(s)	227, 230, 373, 807
BseXI	GCAGC	5 cut(s)	142, 333, 374, 377, 543
BshFI	GGCC	1 cut(s)	37
BshNI	GGYRCC	1 cut(s)	550
BsiHKAI	GWGCWC	2 cut(s)	107, 618
BsiSI	CCGG	5 cut(s)	138, 151, 284, 560, 884
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	472, 473
BsmAI	GTCTC	4 cut(s)	90, 128, 418, 585
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	37
Bso31I	GGTCTC	1 cut(s)	128
Bsp119I	TTCGAA	1 cut(s)	591
Bsp1286I	GDGCHC	2 cut(s)	107, 618
Bsp13I	TCCGGA	1 cut(s)	883
Bsp143I	GATC	5 cut(s)	113, 537, 634, 922, 953
Bsp19I	CCATGG	2 cut(s)	38, 638
BspACI	CCGC	3 cut(s)	512, 554, 935
BspANI	GGCC	1 cut(s)	37
BspEI	TCCGGA	1 cut(s)	883
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	4 cut(s)	155, 552, 636, 813
BspMAI	CTGCAG	2 cut(s)	354, 675
BspPI	GGATC	4 cut(s)	108, 629, 642, 961
BspT104I	TTCGAA	1 cut(s)	591
BspT107I	GGYRCC	1 cut(s)	550
BspTNI	GGTCTC	1 cut(s)	128
BsrFI	RCCGGY	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	104, 830
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	4 cut(s)	38, 117, 284, 638
BssMI	GATC	5 cut(s)	113, 537, 634, 922, 953
BssNI	GRCGYC	1 cut(s)	303
BssT1I	CCWWGG	3 cut(s)	38, 117, 638
Bst6I	CTCTTC	2 cut(s)	12, 326
BstACI	GRCGYC	1 cut(s)	303
BstBI	TTCGAA	1 cut(s)	591
BstC8I	GCNNGC	5 cut(s)	152, 240, 326, 339, 492
BstDEI	CTNAG	1 cut(s)	845
BstDSI	CCRYGG	2 cut(s)	38, 638
BstF5I	GGATG	2 cut(s)	707, 775
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	5 cut(s)	116, 540, 637, 925, 956
BstMAI	GTCTC	4 cut(s)	90, 128, 418, 585
BstMBI	GATC	5 cut(s)	113, 537, 634, 922, 953
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 269, 334, 371
BstNSI	RCATGY	3 cut(s)	77, 757, 919
BstSCI	CCNGG	1 cut(s)	283
BstSFI	CTRYAG	2 cut(s)	350, 671
BstV1I	GCAGC	5 cut(s)	142, 333, 374, 377, 543
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	634
BstXI	CCANNNNNNTGG	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	634
BsuRI	GGCC	1 cut(s)	37
BtgI	CCRYGG	2 cut(s)	38, 638
BtsCI	GGATG	2 cut(s)	707, 775
Cac8I	GCNNGC	5 cut(s)	152, 240, 326, 339, 492
CciI	TCATGA	1 cut(s)	424
CfoI	GCGC	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	3 cut(s)	35, 89, 761
Csp6I	GTAC	1 cut(s)	135
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	1 cut(s)	845
DpnI	GATC	5 cut(s)	115, 539, 636, 924, 955
DpnII	GATC	5 cut(s)	113, 537, 634, 922, 953
DrdI	GACNNNNNNGTC	1 cut(s)	302
DseDI	GACNNNNNNGTC	1 cut(s)	302
Eam1104I	CTCTTC	2 cut(s)	12, 326
EarI	CTCTTC	2 cut(s)	12, 326
Ecl136II	GAGCTC	2 cut(s)	105, 616
Eco130I	CCWWGG	3 cut(s)	38, 117, 638
Eco24I	GRGCYC	2 cut(s)	107, 618
Eco31I	GGTCTC	1 cut(s)	128
Eco47I	GGWCC	2 cut(s)	89, 761
Eco53kI	GAGCTC	2 cut(s)	105, 616
EcoICRI	GAGCTC	2 cut(s)	105, 616
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	722
EcoT14I	CCWWGG	3 cut(s)	38, 117, 638
EcoT38I	GRGCYC	2 cut(s)	107, 618
ErhI	CCWWGG	3 cut(s)	38, 117, 638
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	1 cut(s)	162
FauI	CCCGC	1 cut(s)	942
FbaI	TGATCA	1 cut(s)	922
Fnu4HI	GCNGC	7 cut(s)	131, 322, 363, 366, 554, 557, 962
FokI	GGATG	2 cut(s)	694, 782
FriOI	GRGCYC	2 cut(s)	107, 618
Fsp4HI	GCNGC	7 cut(s)	131, 322, 363, 366, 554, 557, 962
FspBI	CTAG	1 cut(s)	342
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	7 cut(s)	131, 322, 363, 366, 554, 557, 962
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	5 cut(s)	138, 151, 284, 560, 884
HhaI	GCGC	1 cut(s)	496
Hin1I	GRCGYC	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HinfI	GANTC	3 cut(s)	346, 647, 880
HpaII	CCGG	5 cut(s)	138, 151, 284, 560, 884
HphI	GGTGA	2 cut(s)	238, 501
Hpy188I	TCNGA	6 cut(s)	93, 472, 528, 535, 712, 942
Hpy188III	TCNNGA	6 cut(s)	307, 425, 767, 884, 907, 951
Hpy99I	CGWCG	1 cut(s)	490
HpyAV	CCTTC	3 cut(s)	37, 676, 848
HpyCH4IV	ACGT	2 cut(s)	303, 522
HpyCH4V	TGCA	5 cut(s)	130, 198, 238, 352, 673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 269, 334, 371
HpyF3I	CTNAG	1 cut(s)	845
HpySE526I	ACGT	2 cut(s)	303, 522
Hsp92I	GRCGYC	1 cut(s)	303
HspAI	GCGC	1 cut(s)	494
Kpn2I	TCCGGA	1 cut(s)	883
KroI	GCCGGC	1 cut(s)	150
KroNI	GCCGGC	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	922
Kzo9I	GATC	5 cut(s)	113, 537, 634, 922, 953
LmnI	GCTCC	8 cut(s)	102, 110, 159, 177, 318, 621, 778, 811
Lsp1109I	GCAGC	5 cut(s)	142, 333, 374, 377, 543
LweI	GCATC	1 cut(s)	760
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	2 cut(s)	303, 522
MaeIII	GTNAC	1 cut(s)	507
MalI	GATC	5 cut(s)	115, 539, 636, 924, 955
MboI	GATC	5 cut(s)	113, 537, 634, 922, 953
MboII	GAAGA	5 cut(s)	29, 65, 91, 199, 343
MfeI	CAATTG	1 cut(s)	460
MflI	RGATCY	1 cut(s)	634
MhlI	GDGCHC	2 cut(s)	107, 618
MluCI	AATT	7 cut(s)	200, 245, 310, 455, 460, 722, 926
MlyI	GAGTC	1 cut(s)	874
MroI	TCCGGA	1 cut(s)	883
MroNI	GCCGGC	1 cut(s)	150
MseI	TTAA	2 cut(s)	68, 570
MslI	CAYNNNNRTG	2 cut(s)	440, 545
MspA1I	CMGCKG	1 cut(s)	556
MspI	CCGG	5 cut(s)	138, 151, 284, 560, 884
MspR9I	CCNGG	1 cut(s)	285
MunI	CAATTG	1 cut(s)	460
MwoI	GCNNNNNNNGC	4 cut(s)	70, 269, 334, 371
NaeI	GCCGGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	285
NcoI	CCATGG	2 cut(s)	38, 638
NdeII	GATC	5 cut(s)	113, 537, 634, 922, 953
NgoMIV	GCCGGC	1 cut(s)	150
NlaIV	GGNNCC	4 cut(s)	155, 552, 636, 813
NmuCI	GTSAC	1 cut(s)	507
NspI	RCATGY	3 cut(s)	77, 757, 919
NspV	TTCGAA	1 cut(s)	591
OliI	CACNNNNGTG	1 cut(s)	440
PagI	TCATGA	1 cut(s)	424
PciI	ACATGT	2 cut(s)	753, 915
PdiI	GCCGGC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	346, 647
PkrI	GCNGC	7 cut(s)	132, 323, 364, 367, 555, 558, 963
PleI	GAGTC	1 cut(s)	874
PpsI	GAGTC	1 cut(s)	874
PpuMI	RGGWCCY	1 cut(s)	761
PscI	ACATGT	2 cut(s)	753, 915
Psp124BI	GAGCTC	2 cut(s)	107, 618
Psp5II	RGGWCCY	1 cut(s)	761
PspN4I	GGNNCC	4 cut(s)	155, 552, 636, 813
PspPI	GGNCC	3 cut(s)	35, 89, 761
PspPPI	RGGWCCY	1 cut(s)	761
PstI	CTGCAG	2 cut(s)	354, 675
PsuI	RGATCY	1 cut(s)	634
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	2 cut(s)	440, 545
SacI	GAGCTC	2 cut(s)	107, 618
SaqAI	TTAA	2 cut(s)	68, 570
SatI	GCNGC	7 cut(s)	131, 322, 363, 366, 554, 557, 962
Sau3AI	GATC	5 cut(s)	113, 537, 634, 922, 953
Sau96I	GGNCC	3 cut(s)	35, 89, 761
SchI	GAGTC	1 cut(s)	874
ScrFI	CCNGG	1 cut(s)	285
SduI	GDGCHC	2 cut(s)	107, 618
SfaNI	GCATC	1 cut(s)	760
SfcI	CTRYAG	2 cut(s)	350, 671
SfuI	TTCGAA	1 cut(s)	591
SinI	GGWCC	2 cut(s)	89, 761
SmiMI	CAYNNNNRTG	2 cut(s)	440, 545
Sse9I	AATT	7 cut(s)	200, 245, 310, 455, 460, 722, 926
SsiI	CCGC	3 cut(s)	512, 554, 935
SspI	AATATT	1 cut(s)	702
SspMI	CTAG	1 cut(s)	342
SstI	GAGCTC	2 cut(s)	107, 618
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	3 cut(s)	38, 117, 638
TaiI	ACGT	2 cut(s)	306, 525
TaqI	TCGA	6 cut(s)	112, 591, 738, 750, 867, 897
TasI	AATT	7 cut(s)	200, 245, 310, 455, 460, 722, 926
TauI	GCSGC	1 cut(s)	556
TfiI	GAWTC	2 cut(s)	346, 647
Tru1I	TTAA	2 cut(s)	68, 570
Tru9I	TTAA	2 cut(s)	68, 570
TseFI	GTSAC	1 cut(s)	507
TseI	GCWGC	6 cut(s)	130, 321, 362, 365, 556, 961
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	1 cut(s)	413
TspGWI	ACGGA	4 cut(s)	146, 164, 308, 804
VpaK11BI	GGWCC	2 cut(s)	89, 761
XapI	RAATTY	4 cut(s)	200, 310, 455, 722
XceI	RCATGY	3 cut(s)	77, 757, 919
XspI	CTAG	1 cut(s)	342
ZraI	GACGTC	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.