Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002537

Physical Location & Seq

Genomic Coordinates Reverse (-)

22460189 .. 22461779

Gene Structure 1591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGTCGAATGCATAGTAGAGGTAAGGGTATCTCGGCATCTGCTTTGCCGTACAAGCGTTCATCTCCGAGCTGGCTCAAGACAACCCCTCAAGATGTTGATGAGTCCATCTGCAAATTTGCGAAGAAGGGTTTGACCCCATCGCAGATTGGTGTCATTCTTCGTGACTCTCACGGAATTCCACAGGTGAAAAGTGTTACTGGAAGCAAGATTCTCAGAATTTTGAAAGCTCATGGTCTTGCACCTGAGATCCCTGAGGATCTGTATCACTTGATCAAGAAAGCTGTTGCTATCCGCAAGCATCTTGAGAGGAACAGGAAAGATAAGGATTCCAAATTCAGGCTGATTCTTGTAGAGAGCAGAATCCATCGTCTTGCTCGTTACTACAAGAAGACCAAGAAGCTCCCACCCGTCTGGAAGTACGAGTCTACAACTGCAAGCACTCTTGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0019843 GO:0022626 GO:0022627 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0070181 GO:0071704 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13_N Ribosomal_S15

Protein Analysis

151

Amino Acids

17.09

Weight (kDa)

10.39

Isoelectric Point (pI)

49.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13_N	PF08069	1 - 60	4.1e-31	Ribosomal S13/S15 N-terminal domain
Ribosomal_S15	PF00312	74 - 146	2.2e-15	Ribosomal protein S15

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60770 AT4G00100
fragaria_vesca	FvH4_7g11600 FvH4_7g11600 FvH4_7g28060
malus_domestica	MD00G1099800.v1.1 MD01G1099100.v1.1 MD07G1120500.v1.1 MD07G1257100.v1.1
prunus_persica	Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G281300_v2.0.a1 Prupe.4G286400_v2.0.a1
pyrus_communis	pycom02g16750 pycom07g10470 pycom07g23000
rosa_chinensis	RchiOBHm_Chr1g0350031 RchiOBHm_Chr1g0374971
rosa_laevigata	RLG00000026702
rosa_multiflora	Rmu_sc0000554.1_g000001 Rmu_sc0003674.1_g000017 Rmu_sc0017099.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283130 Rroxscaffold_4G00305110
rosa_rugosa	Rorug01G0208100 Rorug01G0386600 Rorug01G0386700
rosa_samantha	Rh1AG224400 Rh1AG397700 Rh1BG191700 Rh1BG361800 Rh1CG209100 Rh1CG375300 Rh1DG220200 Rh1DG392700
rosa_wichuraiana	Rw1G019170 Rw1G019290 Rw1G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	428
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	2 cut(s)	244, 267
AcsI	RAATTY	4 cut(s)	116, 177, 219, 335
AfaI	GTAC	2 cut(s)	53, 422
AfiI	CCNNNNNNNGG	1 cut(s)	339
AgsI	TTSAA	1 cut(s)	226
AleI	CACNNNNGTG	1 cut(s)	446
AluBI	AGCT	4 cut(s)	72, 230, 284, 403
AluI	AGCT	4 cut(s)	72, 230, 284, 403
AlwI	GGATC	2 cut(s)	244, 267
ApoI	RAATTY	4 cut(s)	116, 177, 219, 335
AsuHPI	GGTGA	1 cut(s)	199
AxyI	CCTNAGG	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	398
BccI	CCATC	3 cut(s)	116, 148, 375
BceAI	ACGGC	1 cut(s)	34
BclI	TGATCA	1 cut(s)	273
BmsI	GCATC	2 cut(s)	47, 310
BpiI	GAAGAC	1 cut(s)	398
BpuEI	CTTGAG	3 cut(s)	62, 75, 326
BsaBI	GATNNNNATC	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
Bse1I	ACTGG	1 cut(s)	205
Bse21I	CCTNAGG	1 cut(s)	255
Bse8I	GATNNNNATC	1 cut(s)	264
BseJI	GATNNNNATC	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseMII	CTCAG	3 cut(s)	229, 237, 246
BseNI	ACTGG	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	339
BsmI	GAATGC	1 cut(s)	15
Bsp143I	GATC	3 cut(s)	249, 259, 273
BspACI	CCGC	1 cut(s)	295
BspCNI	CTCAG	3 cut(s)	228, 238, 247
BspPI	GGATC	2 cut(s)	244, 267
BsrI	ACTGG	1 cut(s)	205
BssMI	GATC	3 cut(s)	249, 259, 273
BstC8I	GCNNGC	3 cut(s)	74, 299, 439
BstDEI	CTNAG	3 cut(s)	215, 246, 255
BstKTI	GATC	3 cut(s)	252, 262, 276
BstMBI	GATC	3 cut(s)	249, 259, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	2 cut(s)	249, 259
BstXI	CCANNNNNNTGG	1 cut(s)	414
BstYI	RGATCY	2 cut(s)	249, 259
Bsu36I	CCTNAGG	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	126
Cac8I	GCNNGC	3 cut(s)	74, 299, 439
Csp6I	GTAC	2 cut(s)	52, 421
CviAII	CATG	1 cut(s)	233
CviJI	RGCY	7 cut(s)	72, 76, 230, 284, 343, 403, 452
CviKI_1	RGCY	7 cut(s)	72, 76, 230, 284, 343, 403, 452
CviQI	GTAC	2 cut(s)	52, 421
DdeI	CTNAG	3 cut(s)	215, 246, 255
DpnI	GATC	3 cut(s)	251, 261, 275
DpnII	GATC	3 cut(s)	249, 259, 273
Eco81I	CCTNAGG	1 cut(s)	255
EcoRI	GAATTC	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	15
FaeI	CATG	1 cut(s)	236
FaiI	YATR	2 cut(s)	15, 234
FatI	CATG	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	273
FblI	GTMKAC	1 cut(s)	428
Hin1II	CATG	1 cut(s)	236
HinfI	GANTC	7 cut(s)	104, 167, 211, 329, 346, 363, 425
HphI	GGTGA	1 cut(s)	199
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	2 cut(s)	69, 218
Hpy188III	TCNNGA	6 cut(s)	79, 92, 164, 277, 305, 415
Hpy8I	GTNNAC	1 cut(s)	429
HpyAV	CCTTC	1 cut(s)	121
HpyCH4V	TGCA	4 cut(s)	13, 114, 242, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	3 cut(s)	215, 246, 255
Hsp92II	CATG	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	273
Kzo9I	GATC	3 cut(s)	249, 259, 273
LmnI	GCTCC	1 cut(s)	408
LpnPI	CCDG	8 cut(s)	58, 170, 186, 258, 267, 301, 325, 400
LweI	GCATC	2 cut(s)	47, 310
MaeIII	GTNAC	3 cut(s)	164, 196, 380
MalI	GATC	3 cut(s)	251, 261, 275
MboI	GATC	3 cut(s)	249, 259, 273
MboII	GAAGA	3 cut(s)	136, 152, 403
MflI	RGATCY	2 cut(s)	249, 259
MluCI	AATT	4 cut(s)	116, 177, 219, 335
MlyI	GAGTC	3 cut(s)	113, 161, 434
MnlI	CCTC	4 cut(s)	14, 99, 250, 303
Mph1103I	ATGCAT	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	446
Mva1269I	GAATGC	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeII	GATC	3 cut(s)	249, 259, 273
NlaIII	CATG	1 cut(s)	236
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	164
NsiI	ATGCAT	1 cut(s)	15
OliI	CACNNNNGTG	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	376
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	4 cut(s)	211, 329, 346, 363
PleI	GAGTC	3 cut(s)	112, 161, 433
PpsI	GAGTC	3 cut(s)	112, 161, 433
PsuI	RGATCY	2 cut(s)	249, 259
RsaI	GTAC	2 cut(s)	53, 422
RsaNI	GTAC	2 cut(s)	52, 421
RseI	CAYNNNNRTG	1 cut(s)	446
Sau3AI	GATC	3 cut(s)	249, 259, 273
SchI	GAGTC	3 cut(s)	113, 161, 434
SetI	ASST	7 cut(s)	25, 74, 189, 232, 247, 286, 405
SfaNI	GCATC	2 cut(s)	47, 310
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	3 cut(s)	77, 90, 305
SmoI	CTYRAG	3 cut(s)	77, 90, 305
Sse9I	AATT	4 cut(s)	116, 177, 219, 335
SsiI	CCGC	1 cut(s)	295
TaqI	TCGA	1 cut(s)	7
TasI	AATT	4 cut(s)	116, 177, 219, 335
TfiI	GAWTC	4 cut(s)	211, 329, 346, 363
TseFI	GTSAC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	1 cut(s)	51
TspGWI	ACGGA	1 cut(s)	189
XapI	RAATTY	4 cut(s)	116, 177, 219, 335
XmiI	GTMKAC	1 cut(s)	428
Zsp2I	ATGCAT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.