Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002537

Physical Location & Seq

Genomic Coordinates Forward (+)

29357669 .. 29357920

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0208100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGTCGCCTTTGCTGGTCCAATTGAGAATACAGTTTCTCCTAAACAATGTGAACTGTTGGCAATCAGAGCAGGTTTAGACCTCTTGAATTCACTAAGAGTGCAACATGTTGTCATTGAAAGTGACTGTACTGAAGCTATTGCAGAAGCTTCATGTCGTGATCATGCCCTCCTTGCCAATGGTGGACTCATAAACGATATCAAATGTGCTACAACAAAAATCCCATCAGTACAACTATACCATGCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0019843 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0070181 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13_N Ribosomal_S15

Protein Analysis

83

Amino Acids

8.84

Weight (kDa)

5.41

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	2 - 82	5.6e-07	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60770 AT4G00100
fragaria_vesca	FvH4_7g11600 FvH4_7g11600 FvH4_7g28060
malus_domestica	MD00G1099800.v1.1 MD01G1099100.v1.1 MD07G1120500.v1.1 MD07G1257100.v1.1
prunus_persica	Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G281300_v2.0.a1 Prupe.4G286400_v2.0.a1
pyrus_communis	pycom02g16750 pycom07g10470 pycom07g23000
rosa_chinensis	RchiOBHm_Chr1g0350031 RchiOBHm_Chr1g0374971
rosa_laevigata	RLG00000026702
rosa_multiflora	Rmu_sc0000554.1_g000001 Rmu_sc0003674.1_g000017 Rmu_sc0017099.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283130 Rroxscaffold_4G00305110
rosa_rugosa	Rorug01G0208100 Rorug01G0386600 Rorug01G0386700
rosa_samantha	Rh1AG224400 Rh1AG397700 Rh1BG191700 Rh1BG361800 Rh1CG209100 Rh1CG375300 Rh1DG220200 Rh1DG392700
rosa_wichuraiana	Rw1G019170 Rw1G019290 Rw1G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	62
AcsI	RAATTY	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	2 cut(s)	130, 231
AflIII	ACRYGT	1 cut(s)	106
AgsI	TTSAA	2 cut(s)	88, 119
AluBI	AGCT	2 cut(s)	137, 149
AluI	AGCT	2 cut(s)	137, 149
ApoI	RAATTY	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	17
BccI	CCATC	1 cut(s)	232
BclI	TGATCA	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsp143I	GATC	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	62
BssMI	GATC	1 cut(s)	160
Bst4CI	ACNGT	3 cut(s)	34, 57, 128
BstDEI	CTNAG	1 cut(s)	95
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 173
BstNSI	RCATGY	1 cut(s)	110
BveI	ACCTGC	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	129, 230
CviAII	CATG	4 cut(s)	107, 153, 164, 242
CviJI	RGCY	2 cut(s)	137, 149
CviKI_1	RGCY	2 cut(s)	137, 149
CviQI	GTAC	2 cut(s)	129, 230
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	153
EcoRI	GAATTC	1 cut(s)	88
EcoRV	GATATC	1 cut(s)	199
FaeI	CATG	4 cut(s)	110, 156, 167, 245
FaiI	YATR	6 cut(s)	108, 154, 165, 191, 238, 243
FatI	CATG	4 cut(s)	106, 152, 163, 241
FbaI	TGATCA	1 cut(s)	160
Hin1II	CATG	4 cut(s)	110, 156, 167, 245
HindIII	AAGCTT	1 cut(s)	147
HinfI	GANTC	1 cut(s)	186
Hpy166II	GTNNAC	2 cut(s)	53, 185
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	2 cut(s)	85, 158
Hpy8I	GTNNAC	2 cut(s)	53, 185
HpyCH4III	ACNGT	3 cut(s)	34, 57, 128
HpyCH4V	TGCA	3 cut(s)	103, 143, 245
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 173
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	4 cut(s)	110, 156, 167, 245
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	160
LpnPI	CCDG	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MfeI	CAATTG	1 cut(s)	21
MluCI	AATT	2 cut(s)	21, 88
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	2 cut(s)	92, 179
MunI	CAATTG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	68, 173
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	4 cut(s)	110, 156, 167, 245
NmuCI	GTSAC	1 cut(s)	122
NspI	RCATGY	1 cut(s)	110
PciI	ACATGT	1 cut(s)	106
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
PscI	ACATGT	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	17
RsaI	GTAC	2 cut(s)	130, 231
RsaNI	GTAC	2 cut(s)	129, 230
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	1 cut(s)	180
SetI	ASST	5 cut(s)	76, 84, 139, 151, 250
SgeI	CNNG	8 cut(s)	27, 84, 97, 119, 165, 170, 176, 185
SinI	GGWCC	1 cut(s)	17
Sse9I	AATT	2 cut(s)	21, 88
TaaI	ACNGT	3 cut(s)	34, 57, 128
TasI	AATT	2 cut(s)	21, 88
TatI	WGTACW	2 cut(s)	128, 229
TseFI	GTSAC	1 cut(s)	122
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	1 cut(s)	88
XceI	RCATGY	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.