Belongs to the universal ribosomal protein uS15 family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G60770 AT4G00100 |
| fragaria_vesca | FvH4_7g11600 FvH4_7g11600 FvH4_7g28060 |
| malus_domestica | MD00G1099800.v1.1 MD01G1099100.v1.1 MD07G1120500.v1.1 MD07G1257100.v1.1 |
| prunus_persica | Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G281300_v2.0.a1 Prupe.4G286400_v2.0.a1 |
| pyrus_communis | pycom02g16750 pycom07g10470 pycom07g23000 |
| rosa_chinensis | RchiOBHm_Chr1g0350031 RchiOBHm_Chr1g0374971 |
| rosa_laevigata | RLG00000026702 |
| rosa_multiflora | Rmu_sc0000554.1_g000001 Rmu_sc0003674.1_g000017 Rmu_sc0017099.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00283130 Rroxscaffold_4G00305110 |
| rosa_rugosa | Rorug01G0208100 Rorug01G0386600 Rorug01G0386700 |
| rosa_samantha | Rh1AG224400 Rh1AG397700 Rh1BG191700 Rh1BG361800 Rh1CG209100 Rh1CG375300 Rh1DG220200 Rh1DG392700 |
| rosa_wichuraiana | Rw1G019170 Rw1G019290 Rw1G035290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 220 |
| AciI | CCGC | 1 cut(s) | 435 |
| AcsI | RAATTY | 2 cut(s) | 116, 335 |
| AcuI | CTGAAG | 1 cut(s) | 245 |
| AleI | CACNNNNGTG | 2 cut(s) | 412, 446 |
| AluBI | AGCT | 3 cut(s) | 72, 284, 403 |
| AluI | AGCT | 3 cut(s) | 72, 284, 403 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| AoxI | GGCC | 1 cut(s) | 450 |
| ApoI | RAATTY | 2 cut(s) | 116, 335 |
| AspS9I | GGNCC | 1 cut(s) | 60 |
| AsuHPI | GGTGA | 1 cut(s) | 199 |
| AvaII | GGWCC | 1 cut(s) | 60 |
| AxyI | CCTNAGG | 1 cut(s) | 255 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 22, 54 |
| BbsI | GAAGAC | 1 cut(s) | 398 |
| BccI | CCATC | 1 cut(s) | 375 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 1 cut(s) | 454 |
| BglII | AGATCT | 1 cut(s) | 81 |
| Bme18I | GGWCC | 1 cut(s) | 60 |
| BmgT120I | GGNCC | 1 cut(s) | 60 |
| BmiI | GGNNCC | 1 cut(s) | 62 |
| BpiI | GAAGAC | 1 cut(s) | 398 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 49, 81 |
| Bpu10I | CCTNAGC | 1 cut(s) | 183 |
| BsaAI | YACGTR | 1 cut(s) | 218 |
| BsaWI | WCCGGW | 1 cut(s) | 200 |
| Bse1I | ACTGG | 1 cut(s) | 410 |
| Bse21I | CCTNAGG | 1 cut(s) | 255 |
| BseGI | GGATG | 1 cut(s) | 100 |
| BseMII | CTCAG | 3 cut(s) | 104, 197, 246 |
| BseNI | ACTGG | 1 cut(s) | 410 |
| BseRI | GAGGAG | 1 cut(s) | 116 |
| BshFI | GGCC | 1 cut(s) | 452 |
| BsiSI | CCGG | 1 cut(s) | 201 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsnI | GGCC | 1 cut(s) | 452 |
| Bsp143I | GATC | 1 cut(s) | 81 |
| BspACI | CCGC | 1 cut(s) | 435 |
| BspANI | GGCC | 1 cut(s) | 452 |
| BspCNI | CTCAG | 3 cut(s) | 103, 196, 247 |
| BspLI | GGNNCC | 1 cut(s) | 62 |
| BspQI | GCTCTTC | 1 cut(s) | 51 |
| BsrI | ACTGG | 1 cut(s) | 410 |
| BssMI | GATC | 1 cut(s) | 81 |
| BssNAI | GTATAC | 1 cut(s) | 221 |
| Bst1107I | GTATAC | 1 cut(s) | 221 |
| Bst6I | CTCTTC | 2 cut(s) | 51, 185 |
| BstBAI | YACGTR | 1 cut(s) | 218 |
| BstC8I | GCNNGC | 1 cut(s) | 439 |
| BstDEI | CTNAG | 3 cut(s) | 90, 183, 255 |
| BstF5I | GGATG | 1 cut(s) | 100 |
| BstKTI | GATC | 1 cut(s) | 84 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMBI | GATC | 1 cut(s) | 81 |
| BstSNI | TACGTA | 1 cut(s) | 218 |
| BstV2I | GAAGAC | 1 cut(s) | 398 |
| BstX2I | RGATCY | 1 cut(s) | 81 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 414 |
| BstYI | RGATCY | 1 cut(s) | 81 |
| BstZ17I | GTATAC | 1 cut(s) | 221 |
| Bsu36I | CCTNAGG | 1 cut(s) | 255 |
| BsuRI | GGCC | 1 cut(s) | 452 |
| BtgZI | GCGATG | 1 cut(s) | 353 |
| BtsCI | GGATG | 1 cut(s) | 100 |
| BtsIMutI | CAGTG | 1 cut(s) | 417 |
| Cac8I | GCNNGC | 1 cut(s) | 439 |
| Cfr13I | GGNCC | 1 cut(s) | 60 |
| CviAII | CATG | 2 cut(s) | 173, 233 |
| CviJI | RGCY | 6 cut(s) | 38, 44, 72, 284, 403, 452 |
| CviKI_1 | RGCY | 6 cut(s) | 38, 44, 72, 284, 403, 452 |
| DdeI | CTNAG | 3 cut(s) | 90, 183, 255 |
| DpnI | GATC | 1 cut(s) | 83 |
| DpnII | GATC | 1 cut(s) | 81 |
| Eam1104I | CTCTTC | 2 cut(s) | 51, 185 |
| EarI | CTCTTC | 2 cut(s) | 51, 185 |
| Eco105I | TACGTA | 1 cut(s) | 218 |
| Eco47I | GGWCC | 1 cut(s) | 60 |
| Eco57I | CTGAAG | 1 cut(s) | 245 |
| Eco81I | CCTNAGG | 1 cut(s) | 255 |
| EcoO109I | RGGNCCY | 1 cut(s) | 60 |
| FaeI | CATG | 2 cut(s) | 176, 236 |
| FaiI | YATR | 8 cut(s) | 11, 32, 52, 174, 221, 234, 265, 423 |
| FatI | CATG | 2 cut(s) | 172, 232 |
| FblI | GTMKAC | 1 cut(s) | 220 |
| FokI | GGATG | 1 cut(s) | 107 |
| FspBI | CTAG | 1 cut(s) | 454 |
| HaeIII | GGCC | 1 cut(s) | 452 |
| HapII | CCGG | 1 cut(s) | 201 |
| Hin1II | CATG | 2 cut(s) | 176, 236 |
| HindIII | AAGCTT | 1 cut(s) | 401 |
| HinfI | GANTC | 5 cut(s) | 167, 329, 346, 363, 425 |
| HpaII | CCGG | 1 cut(s) | 201 |
| HphI | GGTGA | 1 cut(s) | 199 |
| Hpy166II | GTNNAC | 1 cut(s) | 221 |
| Hpy188I | TCNGA | 1 cut(s) | 69 |
| Hpy188III | TCNNGA | 3 cut(s) | 92, 245, 277 |
| Hpy8I | GTNNAC | 1 cut(s) | 221 |
| HpyAV | CCTTC | 3 cut(s) | 121, 220, 313 |
| HpyCH4IV | ACGT | 1 cut(s) | 217 |
| HpyCH4V | TGCA | 2 cut(s) | 13, 114 |
| HpyF3I | CTNAG | 3 cut(s) | 90, 183, 255 |
| HpySE526I | ACGT | 1 cut(s) | 217 |
| Hsp92II | CATG | 2 cut(s) | 176, 236 |
| Kzo9I | GATC | 1 cut(s) | 81 |
| LguI | GCTCTTC | 1 cut(s) | 51 |
| LmnI | GCTCC | 1 cut(s) | 247 |
| MaeI | CTAG | 1 cut(s) | 454 |
| MaeII | ACGT | 1 cut(s) | 217 |
| MaeIII | GTNAC | 2 cut(s) | 196, 380 |
| MalI | GATC | 1 cut(s) | 83 |
| MboI | GATC | 1 cut(s) | 81 |
| MboII | GAAGA | 3 cut(s) | 38, 202, 403 |
| MflI | RGATCY | 1 cut(s) | 81 |
| MluCI | AATT | 4 cut(s) | 116, 147, 291, 335 |
| MnlI | CCTC | 7 cut(s) | 14, 51, 75, 94, 151, 250, 281 |
| MseI | TTAA | 1 cut(s) | 77 |
| MslI | CAYNNNNRTG | 2 cut(s) | 412, 446 |
| MspI | CCGG | 1 cut(s) | 201 |
| NdeII | GATC | 1 cut(s) | 81 |
| NlaIII | CATG | 2 cut(s) | 176, 236 |
| NlaIV | GGNNCC | 1 cut(s) | 62 |
| OliI | CACNNNNGTG | 2 cut(s) | 412, 446 |
| PciSI | GCTCTTC | 1 cut(s) | 51 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 376 |
| PfeI | GAWTC | 5 cut(s) | 167, 329, 346, 363, 425 |
| Ppu21I | YACGTR | 1 cut(s) | 218 |
| PpuMI | RGGWCCY | 1 cut(s) | 60 |
| Psp5II | RGGWCCY | 1 cut(s) | 60 |
| PspN4I | GGNNCC | 1 cut(s) | 62 |
| PspPI | GGNCC | 1 cut(s) | 60 |
| PspPPI | RGGWCCY | 1 cut(s) | 60 |
| PsuI | RGATCY | 1 cut(s) | 81 |
| RseI | CAYNNNNRTG | 2 cut(s) | 412, 446 |
| SapI | GCTCTTC | 1 cut(s) | 51 |
| SaqAI | TTAA | 1 cut(s) | 77 |
| Sau3AI | GATC | 1 cut(s) | 81 |
| Sau96I | GGNCC | 1 cut(s) | 60 |
| SetI | ASST | 8 cut(s) | 25, 74, 189, 220, 256, 273, 286, 405 |
| SinI | GGWCC | 1 cut(s) | 60 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 412, 446 |
| SnaBI | TACGTA | 1 cut(s) | 218 |
| Sse9I | AATT | 4 cut(s) | 116, 147, 291, 335 |
| SsiI | CCGC | 1 cut(s) | 435 |
| SspMI | CTAG | 1 cut(s) | 454 |
| TaiI | ACGT | 1 cut(s) | 220 |
| TasI | AATT | 4 cut(s) | 116, 147, 291, 335 |
| TfiI | GAWTC | 5 cut(s) | 167, 329, 346, 363, 425 |
| Tru1I | TTAA | 1 cut(s) | 77 |
| Tru9I | TTAA | 1 cut(s) | 77 |
| TscAI | CASTG | 1 cut(s) | 417 |
| TspDTI | ATGAA | 1 cut(s) | 438 |
| TspRI | CASTG | 1 cut(s) | 417 |
| VpaK11BI | GGWCC | 1 cut(s) | 60 |
| XapI | RAATTY | 2 cut(s) | 116, 335 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 445 |
| XmiI | GTMKAC | 1 cut(s) | 220 |
| XspI | CTAG | 1 cut(s) | 454 |