RLG00000026702

Belongs to the universal ribosomal protein uS15 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
5169166 .. 5170701
1536 bp
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UTR
Exon/CDS
Intron
RLM00000026702

Sequence Viewer

Length: 369 bp
ATGGAAAGGGTGGAGGATAGCATTTGCAAGTTTGCGAAGAAGGGTATGACGCCGTCTCAGATCGGTGTGATTCTTCGTGACTCTCATGGGATTGCTCAGGTTAAGAGCGTTACTGGAAGCAAGATCTTGCGGATTCTAAAAGCTCATGGTCTTGCTCCTGAAATTCCCGAGGATCTGTACCACCTTATCAAGAAGGCTGTGTCAGTCAGGAAGCATTTGGAGAGGAACAGGAAGGACAAGGATTCCAAGTTTCGTTTGATTCTTGTGGAGAGCAGGATTCACAGGCTTGCTCGTTACTACAAGAAGACAAAGAAGCTCCCCCCAGTCTGGAAATACGAGTCCACCACTGCCAGCACTCTTGTTGCTTAG

Protein Analysis

123

Amino Acids

13.99

Weight (kDa)

10.2

Isoelectric Point (pI)

38.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S13_N PF08069 2 - 31 1e-12 Ribosomal S13/S15 N-terminal domain
Ribosomal_S15 PF00312 45 - 117 1.2e-15 Ribosomal protein S15
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 130
AclWI GGATC 1 cut(s) 180
AcsI RAATTY 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 50
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 327
AluBI AGCT 2 cut(s) 143, 316
AluI AGCT 2 cut(s) 143, 316
Alw26I GTCTC 1 cut(s) 60
AlwI GGATC 1 cut(s) 180
Ama87I CYCGRG 1 cut(s) 167
ApoI RAATTY 1 cut(s) 162
AvaI CYCGRG 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 311
BceAI ACGGC 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 60
BglII AGATCT 1 cut(s) 123
BmeT110I CYCGRG 1 cut(s) 167
BmrI ACTGGG 1 cut(s) 317
BmuI ACTGGG 1 cut(s) 317
BpiI GAAGAC 1 cut(s) 311
Bpu10I CCTNAGC 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse1I ACTGG 2 cut(s) 118, 323
BseDI CCNNGG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMII CTCAG 2 cut(s) 71, 110
BseNI ACTGG 2 cut(s) 118, 323
BsiHKCI CYCGRG 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 60
BsmBI CGTCTC 1 cut(s) 60
BsoBI CYCGRG 1 cut(s) 167
Bsp143I GATC 3 cut(s) 60, 123, 172
BspACI CCGC 1 cut(s) 130
BspCNI CTCAG 2 cut(s) 70, 109
BspPI GGATC 1 cut(s) 180
BsrI ACTGG 2 cut(s) 118, 323
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 3 cut(s) 60, 123, 172
BssNI GRCGYC 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 50
BstC8I GCNNGC 2 cut(s) 288, 352
BstDEI CTNAG 3 cut(s) 57, 96, 366
BstKTI GATC 3 cut(s) 63, 126, 175
BstMAI GTCTC 1 cut(s) 60
BstMBI GATC 3 cut(s) 60, 123, 172
BstV2I GAAGAC 1 cut(s) 311
BstX2I RGATCY 2 cut(s) 123, 172
BstYI RGATCY 2 cut(s) 123, 172
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 288, 352
CseI GACGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 178
CviAII CATG 2 cut(s) 86, 146
CviJI RGCY 4 cut(s) 143, 197, 286, 316
CviKI_1 RGCY 4 cut(s) 143, 197, 286, 316
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 3 cut(s) 57, 96, 366
DpnI GATC 3 cut(s) 62, 125, 174
DpnII GATC 3 cut(s) 60, 123, 172
Eco88I CYCGRG 1 cut(s) 167
Esp3I CGTCTC 1 cut(s) 60
FaeI CATG 2 cut(s) 89, 149
FaiI YATR 3 cut(s) 47, 87, 147
FatI CATG 2 cut(s) 85, 145
HgaI GACGC 1 cut(s) 58
Hin1I GRCGYC 1 cut(s) 50
Hin1II CATG 2 cut(s) 89, 149
HinfI GANTC 7 cut(s) 70, 80, 133, 242, 259, 277, 338
Hpy166II GTNNAC 1 cut(s) 342
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 6 cut(s) 77, 158, 167, 190, 208, 328
Hpy8I GTNNAC 1 cut(s) 342
HpyAV CCTTC 3 cut(s) 34, 187, 226
HpyCH4V TGCA 1 cut(s) 27
HpyF3I CTNAG 3 cut(s) 57, 96, 366
Hsp92I GRCGYC 1 cut(s) 50
Hsp92II CATG 2 cut(s) 89, 149
Kzo9I GATC 3 cut(s) 60, 123, 172
LmnI GCTCC 2 cut(s) 160, 321
MaeIII GTNAC 3 cut(s) 77, 109, 293
MalI GATC 3 cut(s) 62, 125, 174
MboI GATC 3 cut(s) 60, 123, 172
MboII GAAGA 3 cut(s) 49, 65, 316
MflI RGATCY 2 cut(s) 123, 172
MluCI AATT 1 cut(s) 162
MlyI GAGTC 2 cut(s) 74, 347
MnlI CCTC 3 cut(s) 7, 163, 216
MseI TTAA 1 cut(s) 102
NdeII GATC 3 cut(s) 60, 123, 172
NlaIII CATG 2 cut(s) 89, 149
NmuCI GTSAC 1 cut(s) 77
PfeI GAWTC 5 cut(s) 70, 133, 242, 259, 277
PflFI GACNNNGTC 1 cut(s) 52
PleI GAGTC 2 cut(s) 74, 346
PpsI GAGTC 2 cut(s) 74, 346
PsuI RGATCY 2 cut(s) 123, 172
PsyI GACNNNGTC 1 cut(s) 52
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 102
Sau3AI GATC 3 cut(s) 60, 123, 172
SchI GAGTC 2 cut(s) 74, 347
SetI ASST 4 cut(s) 102, 145, 186, 318
Sse9I AATT 1 cut(s) 162
SsiI CCGC 1 cut(s) 130
TasI AATT 1 cut(s) 162
TfiI GAWTC 5 cut(s) 70, 133, 242, 259, 277
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspRI CASTG 1 cut(s) 352
Tth111I GACNNNGTC 1 cut(s) 52
XapI RAATTY 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.