pycom02g16750

Belongs to the universal ribosomal protein uS15 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
14024562 .. 14026623
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g16750.3

Sequence Viewer

Length: 456 bp
ATGGGGCGTATGCACAGCAGAGGAAAGGGTATTTCAGCTTCGGCTTTGCCGTACAAGAGGACCCCACCTAGCTGGTTGAAGACCTCTACACAGGATGTTGAGGAGAACATCTGTAAGTTTGCCAAGAAGGGTCTGACACCCTCTCAAATTGGTGTTATTCTTCGTGATTCTCACGGTATTGCTCAGGTGAAGAGTGTCACTGGCAGCAAGATCTTGCGTATTCTGAAGGCTCATGGTCTTGCCCCTGAAATTCCTGAGGATCTTTACCACCTGATCAAGAAGGCTGTCTCAATCAGGAAGCATTTGGAGAGGAACAGGAAGGACAAGGATTCTAAATTTAGACTGATTCTGGTTGAGAGCAGAATCCATCGCCTTGCTCGTTACTACAAGAAGACAAAGAAGCTTCCACCAGTCTGGAAGTATGAATCGACCACCGCCAGCACTCTTGTGGCTTAG

Protein Analysis

152

Amino Acids

17.14

Weight (kDa)

10.39

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 435
AclWI GGATC 1 cut(s) 267
AcsI RAATTY 2 cut(s) 249, 335
AcuI CTGAAG 1 cut(s) 245
AfaI GTAC 1 cut(s) 53
AgsI TTSAA 1 cut(s) 79
AleI CACNNNNGTG 1 cut(s) 446
AluBI AGCT 3 cut(s) 38, 72, 403
AluI AGCT 3 cut(s) 38, 72, 403
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 204
ApoI RAATTY 2 cut(s) 249, 335
AspS9I GGNCC 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 199
AvaII GGWCC 1 cut(s) 60
AxyI CCTNAGG 1 cut(s) 255
BarI GAAGNNNNNNTAC 2 cut(s) 22, 54
BbsI GAAGAC 2 cut(s) 86, 398
BbvI GCAGC 1 cut(s) 216
BccI CCATC 1 cut(s) 375
BceAI ACGGC 1 cut(s) 34
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 1 cut(s) 69
BglII AGATCT 1 cut(s) 210
BisI GCNGC 1 cut(s) 205
BlsI GCNGC 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 62
BpiI GAAGAC 2 cut(s) 86, 398
Bpu10I CCTNAGC 1 cut(s) 183
Bse1I ACTGG 2 cut(s) 205, 410
Bse21I CCTNAGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 100
BseMII CTCAG 2 cut(s) 197, 246
BseNI ACTGG 2 cut(s) 205, 410
BseRI GAGGAG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 216
BsmAI GTCTC 1 cut(s) 292
Bsp143I GATC 3 cut(s) 210, 259, 273
BspACI CCGC 1 cut(s) 435
BspCNI CTCAG 2 cut(s) 196, 247
BspLI GGNNCC 1 cut(s) 62
BspPI GGATC 1 cut(s) 267
BsrI ACTGG 2 cut(s) 205, 410
BssMI GATC 3 cut(s) 210, 259, 273
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 439
BstDEI CTNAG 3 cut(s) 183, 255, 453
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 3 cut(s) 213, 262, 276
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 3 cut(s) 210, 259, 273
BstV1I GCAGC 1 cut(s) 216
BstV2I GAAGAC 2 cut(s) 86, 398
BstX2I RGATCY 2 cut(s) 210, 259
BstXI CCANNNNNNTGG 2 cut(s) 72, 414
BstYI RGATCY 2 cut(s) 210, 259
Bsu36I CCTNAGG 1 cut(s) 255
BtgZI GCGATG 1 cut(s) 353
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 1 cut(s) 439
Cfr13I GGNCC 1 cut(s) 60
Csp6I GTAC 1 cut(s) 52
CviAII CATG 1 cut(s) 233
CviJI RGCY 7 cut(s) 38, 44, 72, 230, 284, 403, 452
CviKI_1 RGCY 7 cut(s) 38, 44, 72, 230, 284, 403, 452
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 3 cut(s) 183, 255, 453
DpnI GATC 3 cut(s) 212, 261, 275
DpnII GATC 3 cut(s) 210, 259, 273
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 245
Eco81I CCTNAGG 1 cut(s) 255
EcoO109I RGGNCCY 1 cut(s) 60
FaeI CATG 1 cut(s) 236
FaiI YATR 3 cut(s) 11, 234, 423
FatI CATG 1 cut(s) 232
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 205
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 1 cut(s) 205
FspBI CTAG 1 cut(s) 69
GluI GCNGC 1 cut(s) 205
Hin1II CATG 1 cut(s) 236
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 5 cut(s) 167, 329, 346, 363, 425
HphI GGTGA 1 cut(s) 199
Hpy188I TCNGA 2 cut(s) 135, 225
Hpy188III TCNNGA 5 cut(s) 164, 254, 277, 295, 415
HpyAV CCTTC 4 cut(s) 121, 220, 274, 313
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 1 cut(s) 13
HpyF3I CTNAG 3 cut(s) 183, 255, 453
Hsp92II CATG 1 cut(s) 236
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 3 cut(s) 210, 259, 273
Lsp1109I GCAGC 1 cut(s) 216
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 196, 380
MalI GATC 3 cut(s) 212, 261, 275
MboI GATC 3 cut(s) 210, 259, 273
MboII GAAGA 4 cut(s) 91, 152, 202, 403
MflI RGATCY 2 cut(s) 210, 259
MluCI AATT 3 cut(s) 147, 249, 335
MnlI CCTC 7 cut(s) 14, 51, 94, 94, 151, 250, 303
MslI CAYNNNNRTG 1 cut(s) 446
NdeII GATC 3 cut(s) 210, 259, 273
NlaIII CATG 1 cut(s) 236
NlaIV GGNNCC 1 cut(s) 62
NmuCI GTSAC 1 cut(s) 196
OliI CACNNNNGTG 1 cut(s) 446
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 376
PfeI GAWTC 5 cut(s) 167, 329, 346, 363, 425
PkrI GCNGC 1 cut(s) 206
PpuMI RGGWCCY 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 60
PspN4I GGNNCC 1 cut(s) 62
PspPI GGNCC 1 cut(s) 60
PspPPI RGGWCCY 1 cut(s) 60
PsuI RGATCY 2 cut(s) 210, 259
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 446
SatI GCNGC 1 cut(s) 205
Sau3AI GATC 3 cut(s) 210, 259, 273
Sau96I GGNCC 1 cut(s) 60
SetI ASST 7 cut(s) 40, 70, 74, 86, 189, 273, 405
SinI GGWCC 1 cut(s) 60
SmiMI CAYNNNNRTG 1 cut(s) 446
Sse9I AATT 3 cut(s) 147, 249, 335
SsiI CCGC 1 cut(s) 435
SspMI CTAG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 176
TaqI TCGA 1 cut(s) 428
TasI AATT 3 cut(s) 147, 249, 335
TfiI GAWTC 5 cut(s) 167, 329, 346, 363, 425
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 438
TspRI CASTG 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 60
XapI RAATTY 2 cut(s) 249, 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.