Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002537

Physical Location & Seq

Genomic Coordinates Reverse (-)

27999588 .. 28001599

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G281300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGTCGTATGCACAGTCATGGAAAGGGCATGTCAGCCTCAGCTCTGCCATACAAGAGAAGTTCGCCTAGCTGGTTGAAGGTCACTGCTCCAGATGTTGAAGAGAACATCTGCAAGTTTGCAAAGAAGGGTATGACTCCATCTCAGATCGGTGTGATTCTTCGTGACTCGCATGGCATTGCTCAGGTTAAGAGCGTGACTGGAAGCAAGATCTTGCGTATTCTTAAAGCTCATGGTCTTGCTCCCGAAATTCCTGAGGATCTGTACCATCTTATCAAGAAGGCAGTGTCAATTAGGAAGCATTTGGAGAGGAATAGGAAGGATAAGGATTCAAAGTTTCGGTTGATTTTGGTTGAGAGCAGGATCCACAGGCTCTCTCGTTACTACAAGAAAACAAAGAAGCTTCCTCCTGTCTGGAAATACGAGTCAACCACTGCCAGCACTCTGGTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0019843 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0070181 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13_N Ribosomal_S15

Protein Analysis

152

Amino Acids

17.1

Weight (kDa)

10.31

Isoelectric Point (pI)

53.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60770 AT4G00100
fragaria_vesca	FvH4_7g11600 FvH4_7g11600 FvH4_7g28060
malus_domestica	MD00G1099800.v1.1 MD01G1099100.v1.1 MD07G1120500.v1.1 MD07G1257100.v1.1
prunus_persica	Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G281300_v2.0.a1 Prupe.4G286400_v2.0.a1
pyrus_communis	pycom02g16750 pycom07g10470 pycom07g23000
rosa_chinensis	RchiOBHm_Chr1g0350031 RchiOBHm_Chr1g0374971
rosa_laevigata	RLG00000026702
rosa_multiflora	Rmu_sc0000554.1_g000001 Rmu_sc0003674.1_g000017 Rmu_sc0017099.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283130 Rroxscaffold_4G00305110
rosa_rugosa	Rorug01G0208100 Rorug01G0386600 Rorug01G0386700
rosa_samantha	Rh1AG224400 Rh1AG397700 Rh1BG191700 Rh1BG361800 Rh1CG209100 Rh1CG375300 Rh1DG220200 Rh1DG392700
rosa_wichuraiana	Rw1G019170 Rw1G019290 Rw1G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	267, 358, 371
AcsI	RAATTY	1 cut(s)	249
AfaI	GTAC	1 cut(s)	266
AgsI	TTSAA	3 cut(s)	79, 101, 333
AluBI	AGCT	4 cut(s)	44, 72, 230, 403
AluI	AGCT	4 cut(s)	44, 72, 230, 403
AlwI	GGATC	3 cut(s)	267, 358, 371
ApoI	RAATTY	1 cut(s)	249
AxyI	CCTNAGG	1 cut(s)	255
BamHI	GGATCC	1 cut(s)	363
BbvCI	CCTCAGC	1 cut(s)	40
BccI	CCATC	2 cut(s)	148, 276
BfaI	CTAG	1 cut(s)	69
BglII	AGATCT	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	2 cut(s)	40, 183
Bse1I	ACTGG	1 cut(s)	205
Bse21I	CCTNAGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	4 cut(s)	54, 158, 197, 246
BseNI	ACTGG	1 cut(s)	205
Bsp143I	GATC	4 cut(s)	147, 210, 259, 363
BspCNI	CTCAG	4 cut(s)	53, 157, 196, 247
BspLI	GGNNCC	1 cut(s)	365
BspPI	GGATC	3 cut(s)	267, 358, 371
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	205
BssMI	GATC	4 cut(s)	147, 210, 259, 363
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	5 cut(s)	40, 144, 183, 255, 453
BstKTI	GATC	4 cut(s)	150, 213, 262, 366
BstMBI	GATC	4 cut(s)	147, 210, 259, 363
BstNSI	RCATGY	1 cut(s)	34
BstX2I	RGATCY	3 cut(s)	210, 259, 363
BstXI	CCANNNNNNTGG	1 cut(s)	445
BstYI	RGATCY	3 cut(s)	210, 259, 363
Bsu36I	CCTNAGG	1 cut(s)	255
BtsI	GCAGTG	3 cut(s)	84, 291, 432
BtsIMutI	CAGTG	3 cut(s)	84, 291, 432
Cac8I	GCNNGC	1 cut(s)	439
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	4 cut(s)	20, 31, 173, 233
CviJI	RGCY	6 cut(s)	38, 44, 72, 230, 373, 403
CviKI_1	RGCY	6 cut(s)	38, 44, 72, 230, 373, 403
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	5 cut(s)	40, 144, 183, 255, 453
DpnI	GATC	4 cut(s)	149, 212, 261, 365
DpnII	GATC	4 cut(s)	147, 210, 259, 363
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco81I	CCTNAGG	1 cut(s)	255
FaeI	CATG	4 cut(s)	23, 34, 176, 236
FaiI	YATR	7 cut(s)	11, 21, 32, 52, 134, 174, 234
FatI	CATG	4 cut(s)	19, 30, 172, 232
FspBI	CTAG	1 cut(s)	69
GsuI	CTGGAG	1 cut(s)	75
Hin1II	CATG	4 cut(s)	23, 34, 176, 236
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	5 cut(s)	136, 157, 167, 329, 425
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	6 cut(s)	92, 164, 245, 254, 277, 415
Hpy8I	GTNNAC	1 cut(s)	429
HpyAV	CCTTC	4 cut(s)	73, 121, 274, 313
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	13, 114, 122
HpyF3I	CTNAG	5 cut(s)	40, 144, 183, 255, 453
Hsp92II	CATG	4 cut(s)	23, 34, 176, 236
Kzo9I	GATC	4 cut(s)	147, 210, 259, 363
LmnI	GCTCC	2 cut(s)	94, 247
MaeI	CTAG	1 cut(s)	69
MaeIII	GTNAC	4 cut(s)	82, 164, 196, 380
MalI	GATC	4 cut(s)	149, 212, 261, 365
MboI	GATC	4 cut(s)	147, 210, 259, 363
MboII	GAAGA	2 cut(s)	113, 152
MflI	RGATCY	3 cut(s)	210, 259, 363
MluCI	AATT	2 cut(s)	249, 291
MlyI	GAGTC	3 cut(s)	130, 161, 434
MnlI	CCTC	4 cut(s)	49, 250, 303, 417
MseI	TTAA	2 cut(s)	189, 225
MslI	CAYNNNNRTG	1 cut(s)	18
NdeII	GATC	4 cut(s)	147, 210, 259, 363
NlaIII	CATG	4 cut(s)	23, 34, 176, 236
NlaIV	GGNNCC	1 cut(s)	365
NmuCI	GTSAC	3 cut(s)	82, 164, 196
NspI	RCATGY	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	157, 329
PleI	GAGTC	3 cut(s)	130, 161, 433
PpsI	GAGTC	3 cut(s)	130, 161, 433
PspN4I	GGNNCC	1 cut(s)	365
PsuI	RGATCY	3 cut(s)	210, 259, 363
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	189, 225
Sau3AI	GATC	4 cut(s)	147, 210, 259, 363
SchI	GAGTC	3 cut(s)	130, 161, 434
SetI	ASST	6 cut(s)	46, 74, 84, 189, 232, 405
SmiMI	CAYNNNNRTG	1 cut(s)	18
Sse9I	AATT	2 cut(s)	249, 291
SspMI	CTAG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	17
TasI	AATT	2 cut(s)	249, 291
TfiI	GAWTC	2 cut(s)	157, 329
Tru1I	TTAA	2 cut(s)	189, 225
Tru9I	TTAA	2 cut(s)	189, 225
TscAI	CASTG	3 cut(s)	91, 291, 439
TseFI	GTSAC	3 cut(s)	82, 164, 196
Tsp45I	GTSAC	3 cut(s)	82, 164, 196
TspRI	CASTG	3 cut(s)	91, 291, 439
XapI	RAATTY	1 cut(s)	249
XceI	RCATGY	1 cut(s)	34
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.