Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002537

Physical Location & Seq

Genomic Coordinates Reverse (-)

10731408 .. 10733892

Gene Structure 2485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g11600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGGAGAATGCACAGCAGAGGTAAGGGTATGTCAGCTTCGGCTCTGCCCTACAAGAGGACCCCTCCTAGCTGGTTGAAGATCTCTACTCAGGACGTTGAGGAGAGTATTTGCAAGTTTGCCAAGAAGGGGCTGACACCTTCTCAAATTGGTGTCATCCTTCGTGATTCTCATGGAATTGCCCAGGTGAAGAGTGTCACTGGCAGCAAGATATTGCGTATTCTTAAGGCCCATGGTCTTGCCCCTGAAATTCCAGAGGATTTGTACCACCTCATCAAGAAGGCAGTCTCCATCAGGAAGCATTTGGAGAGGAACAGGAAGGATAAGGACTCCAAATTCAGGCTGATCCTTGTTGAGAGCAGAATCCATCGCCTTGCCCGTTATTACAAGAAGACAAAGAAGCTTCCACCAGTCTGGAGATATGAATCTACCACCGCCAGCACTCTTGTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0019843 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0070181 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13_N Ribosomal_S15

Protein Analysis

152

Amino Acids

17.17

Weight (kDa)

10.45

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13_N	PF08069	1 - 60	2.1e-31	Ribosomal S13/S15 N-terminal domain
Ribosomal_S15	PF00312	74 - 146	1.6e-15	Ribosomal protein S15

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60770 AT4G00100
fragaria_vesca	FvH4_7g11600 FvH4_7g11600 FvH4_7g28060
malus_domestica	MD00G1099800.v1.1 MD01G1099100.v1.1 MD07G1120500.v1.1 MD07G1257100.v1.1
prunus_persica	Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G281300_v2.0.a1 Prupe.4G286400_v2.0.a1
pyrus_communis	pycom02g16750 pycom07g10470 pycom07g23000
rosa_chinensis	RchiOBHm_Chr1g0350031 RchiOBHm_Chr1g0374971
rosa_laevigata	RLG00000026702
rosa_multiflora	Rmu_sc0000554.1_g000001 Rmu_sc0003674.1_g000017 Rmu_sc0017099.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283130 Rroxscaffold_4G00305110
rosa_rugosa	Rorug01G0208100 Rorug01G0386600 Rorug01G0386700
rosa_samantha	Rh1AG224400 Rh1AG397700 Rh1BG191700 Rh1BG361800 Rh1CG209100 Rh1CG375300 Rh1DG220200 Rh1DG392700
rosa_wichuraiana	Rw1G019170 Rw1G019290 Rw1G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	435
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	2 cut(s)	249, 335
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	3 cut(s)	57, 129, 339
AflII	CTTAAG	1 cut(s)	224
AgsI	TTSAA	1 cut(s)	79
AjnI	CCWGG	1 cut(s)	183
AleI	CACNNNNGTG	1 cut(s)	446
AluBI	AGCT	3 cut(s)	38, 72, 403
AluI	AGCT	3 cut(s)	38, 72, 403
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	228
ApeKI	GCWGC	1 cut(s)	204
ApoI	RAATTY	2 cut(s)	249, 335
AspS9I	GGNCC	2 cut(s)	60, 229
AsuHPI	GGTGA	1 cut(s)	199
AvaII	GGWCC	1 cut(s)	60
BarI	GAAGNNNNNNTAC	2 cut(s)	22, 54
BbsI	GAAGAC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	2 cut(s)	299, 375
BciT130I	CCWGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	1 cut(s)	69
BfrI	CTTAAG	1 cut(s)	224
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	60
BmgT120I	GGNCC	2 cut(s)	60, 229
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	398
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BpmI	CTGGAG	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	424
BsaJI	CCNNGG	2 cut(s)	183, 232
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 129, 339
Bse1I	ACTGG	2 cut(s)	205, 410
Bse8I	GATNNNNATC	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	183, 232
BseGI	GGATG	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	424
BseLI	CCNNNNNNNGG	3 cut(s)	57, 129, 339
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	2 cut(s)	205, 410
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	216
BshFI	GGCC	1 cut(s)	230
BslI	CCNNNNNNNGG	3 cut(s)	57, 129, 339
BsmAI	GTCTC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	81, 345
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	1 cut(s)	435
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	340
BspTI	CTTAAG	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	205, 410
BssECI	CCNNGG	2 cut(s)	183, 232
BssMI	GATC	2 cut(s)	81, 345
BssT1I	CCWWGG	1 cut(s)	232
Bst2UI	CCWGG	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	185
BstAFI	CTTAAG	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	1 cut(s)	90
BstDSI	CCRYGG	1 cut(s)	232
BstENI	CCTNNNNNAGG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	156
BstKTI	GATC	2 cut(s)	84, 348
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	2 cut(s)	81, 345
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	81
BstXI	CCANNNNNNTGG	1 cut(s)	414
BstYI	RGATCY	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	230
BtgI	CCRYGG	1 cut(s)	232
BtgZI	GCGATG	1 cut(s)	353
BtsCI	GGATG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	439
Cfr13I	GGNCC	2 cut(s)	60, 229
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	2 cut(s)	173, 233
CviJI	RGCY	8 cut(s)	38, 44, 72, 133, 230, 343, 403, 452
CviKI_1	RGCY	8 cut(s)	38, 44, 72, 133, 230, 343, 403, 452
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	2 cut(s)	83, 347
DpnII	GATC	2 cut(s)	81, 345
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	60
EcoNI	CCTNNNNNAGG	1 cut(s)	55
EcoO109I	RGGNCCY	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	2 cut(s)	176, 236
FaiI	YATR	4 cut(s)	32, 174, 234, 423
FatI	CATG	2 cut(s)	172, 232
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	1 cut(s)	205
GsuI	CTGGAG	1 cut(s)	436
HaeIII	GGCC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	176, 236
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	4 cut(s)	167, 329, 363, 425
HphI	GGTGA	1 cut(s)	199
Hpy188III	TCNNGA	6 cut(s)	92, 164, 254, 277, 295, 415
HpyAV	CCTTC	5 cut(s)	121, 150, 170, 274, 313
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	13, 114
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	176, 236
Kzo9I	GATC	2 cut(s)	81, 345
Lsp1109I	GCAGC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	83, 347
MboI	GATC	2 cut(s)	81, 345
MboII	GAAGA	3 cut(s)	91, 202, 403
MflI	RGATCY	1 cut(s)	81
MluCI	AATT	4 cut(s)	147, 177, 249, 335
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	7 cut(s)	14, 51, 75, 94, 250, 281, 303
MseI	TTAA	2 cut(s)	225, 454
MslI	CAYNNNNRTG	1 cut(s)	446
MspCI	CTTAAG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	185
NcoI	CCATGG	1 cut(s)	232
NdeII	GATC	2 cut(s)	81, 345
NlaIII	CATG	2 cut(s)	176, 236
NlaIV	GGNNCC	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	196
OliI	CACNNNNGTG	1 cut(s)	446
PcsI	WCGNNNNNNNCGW	1 cut(s)	376
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	3 cut(s)	167, 363, 425
PkrI	GCNGC	1 cut(s)	206
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
PpuMI	RGGWCCY	1 cut(s)	60
Psp5II	RGGWCCY	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	62
PspPI	GGNCC	2 cut(s)	60, 229
PspPPI	RGGWCCY	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	81
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	2 cut(s)	225, 454
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	2 cut(s)	81, 345
Sau96I	GGNCC	2 cut(s)	60, 229
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	185
SetI	ASST	8 cut(s)	25, 40, 74, 99, 142, 189, 273, 405
SinI	GGWCC	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	4 cut(s)	147, 177, 249, 335
SsiI	CCGC	1 cut(s)	435
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	232
TaiI	ACGT	1 cut(s)	99
TasI	AATT	4 cut(s)	147, 177, 249, 335
TfiI	GAWTC	3 cut(s)	167, 363, 425
Tru1I	TTAA	2 cut(s)	225, 454
Tru9I	TTAA	2 cut(s)	225, 454
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	204
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	438
TspRI	CASTG	1 cut(s)	205
Vha464I	CTTAAG	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	60
XagI	CCTNNNNNAGG	1 cut(s)	55
XapI	RAATTY	2 cut(s)	249, 335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.