Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002537

Physical Location & Seq

Genomic Coordinates Forward (+)

5142742 .. 5144698

Gene Structure 1957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGGCGTATGCACAGCCATGGAAAGGGTATGTCAGCTTCGGCTCTGCCCTACAAGAGAACCCCACCGAGCTGGTTGAAGATCTCTACCCCCGATGTGGAGGATAGCATTTGCAAGTTTGCGAAGAAGGGTATGACGCCGTCTCAGATCGGTGTGATTCTTCGTGACTCTCATGGAATTGCTCAGGTTAAGAGCGTTACTGGAAGCAAGATCTTGCGGATTCTTAAAGCTCATGGTCTTGCTCCTGAAATTCCTGAGGATCTGTACCACCTTATCAAGAAGGCTGTGTCAGTCAGGAAGCATTTGGAGAGGAACAGGAAGGACAAGGATTCCAAGTTCCGTTTGATTCTTGTGGAGAGCAGGATTCACAGGCTTGCTCGTTACTACAAGAAGACAAAGAAGCTCCCCCAGTCTGGAAATACGAGTCCACCACTGCCAGCACTCTTGTTGCTTAGGTTGGGAATGAAGCTCTGGATAGCTAGCTTGGGTTCTCTTGGCCAGATGCATGGACTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0019843 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0070181 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13_N Ribosomal_S15

Protein Analysis

172

Amino Acids

19.21

Weight (kDa)

10.54

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13_N	PF08069	1 - 60	1.2e-30	Ribosomal S13/S15 N-terminal domain
Ribosomal_S15	PF00312	74 - 133	1.1e-13	Ribosomal protein S15

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60770 AT4G00100
fragaria_vesca	FvH4_7g11600 FvH4_7g11600 FvH4_7g28060
malus_domestica	MD00G1099800.v1.1 MD01G1099100.v1.1 MD07G1120500.v1.1 MD07G1257100.v1.1
prunus_persica	Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G281300_v2.0.a1 Prupe.4G286400_v2.0.a1
pyrus_communis	pycom02g16750 pycom07g10470 pycom07g23000
rosa_chinensis	RchiOBHm_Chr1g0350031 RchiOBHm_Chr1g0374971
rosa_laevigata	RLG00000026702
rosa_multiflora	Rmu_sc0000554.1_g000001 Rmu_sc0003674.1_g000017 Rmu_sc0017099.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283130 Rroxscaffold_4G00305110
rosa_rugosa	Rorug01G0208100 Rorug01G0386600 Rorug01G0386700
rosa_samantha	Rh1AG224400 Rh1AG397700 Rh1BG191700 Rh1BG361800 Rh1CG209100 Rh1CG375300 Rh1DG220200 Rh1DG392700
rosa_wichuraiana	Rw1G019170 Rw1G019290 Rw1G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	517
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	3 cut(s)	25, 97, 413
AgsI	TTSAA	1 cut(s)	79
AloI	GAACNNNNNNTCC	2 cut(s)	320, 352
AluBI	AGCT	7 cut(s)	38, 72, 230, 403, 469, 479, 483
AluI	AGCT	7 cut(s)	38, 72, 230, 403, 469, 479, 483
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	1 cut(s)	496
ApoI	RAATTY	1 cut(s)	249
AsuNHI	GCTAGC	1 cut(s)	479
AxyI	CCTNAGG	1 cut(s)	255
BalI	TGGCCA	1 cut(s)	498
BarI	GAAGNNNNNNTAC	2 cut(s)	22, 54
BbsI	GAAGAC	1 cut(s)	398
BceAI	ACGGC	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	1 cut(s)	480
BglII	AGATCT	2 cut(s)	81, 210
BmrI	ACTGGG	1 cut(s)	403
BmsI	GCATC	1 cut(s)	492
BmtI	GCTAGC	1 cut(s)	483
BmuI	ACTGGG	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	398
Bpu10I	CCTNAGC	2 cut(s)	183, 452
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 97, 413
Bse1I	ACTGG	2 cut(s)	205, 409
Bse21I	CCTNAGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	19
BseLI	CCNNNNNNNGG	3 cut(s)	25, 97, 413
BseMII	CTCAG	3 cut(s)	158, 197, 246
BseNI	ACTGG	2 cut(s)	205, 409
BshFI	GGCC	1 cut(s)	498
BslI	CCNNNNNNNGG	3 cut(s)	25, 97, 413
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	498
Bsp143I	GATC	4 cut(s)	81, 147, 210, 259
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	498
BspCNI	CTCAG	3 cut(s)	157, 196, 247
BspOI	GCTAGC	1 cut(s)	483
BspPI	GGATC	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	205, 409
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	4 cut(s)	81, 147, 210, 259
BssNI	GRCGYC	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	137
BstC8I	GCNNGC	3 cut(s)	375, 438, 481
BstDEI	CTNAG	4 cut(s)	144, 183, 255, 452
BstDSI	CCRYGG	1 cut(s)	19
BstKTI	GATC	4 cut(s)	84, 150, 213, 262
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	4 cut(s)	81, 147, 210, 259
BstV2I	GAAGAC	1 cut(s)	398
BstX2I	RGATCY	3 cut(s)	81, 210, 259
BstXI	CCANNNNNNTGG	2 cut(s)	72, 506
BstYI	RGATCY	3 cut(s)	81, 210, 259
Bsu36I	CCTNAGG	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	498
BtgI	CCRYGG	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	431
BtsIMutI	CAGTG	1 cut(s)	431
Cac8I	GCNNGC	3 cut(s)	375, 438, 481
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	4 cut(s)	20, 173, 233, 506
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	4 cut(s)	144, 183, 255, 452
DpnI	GATC	4 cut(s)	83, 149, 212, 261
DpnII	GATC	4 cut(s)	81, 147, 210, 259
EaeI	YGGCCR	1 cut(s)	496
Eco130I	CCWWGG	1 cut(s)	19
Eco81I	CCTNAGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	19
EcoT22I	ATGCAT	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	4 cut(s)	23, 176, 236, 509
FaiI	YATR	8 cut(s)	11, 21, 32, 134, 174, 234, 507, 517
FatI	CATG	4 cut(s)	19, 172, 232, 505
FspBI	CTAG	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	498
HgaI	GACGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	4 cut(s)	23, 176, 236, 509
HinfI	GANTC	7 cut(s)	157, 167, 220, 329, 346, 364, 424
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	7 cut(s)	164, 245, 254, 277, 295, 414, 472
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	3 cut(s)	121, 274, 313
HpyCH4V	TGCA	3 cut(s)	13, 114, 505
HpyF3I	CTNAG	4 cut(s)	144, 183, 255, 452
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	4 cut(s)	23, 176, 236, 509
Kzo9I	GATC	4 cut(s)	81, 147, 210, 259
LmnI	GCTCC	2 cut(s)	247, 408
LweI	GCATC	1 cut(s)	492
MaeI	CTAG	1 cut(s)	480
MaeIII	GTNAC	3 cut(s)	164, 196, 380
MalI	GATC	4 cut(s)	83, 149, 212, 261
MboI	GATC	4 cut(s)	81, 147, 210, 259
MboII	GAAGA	4 cut(s)	91, 136, 152, 403
MflI	RGATCY	3 cut(s)	81, 210, 259
MlsI	TGGCCA	1 cut(s)	498
MluCI	AATT	2 cut(s)	177, 249
MluNI	TGGCCA	1 cut(s)	498
MlyI	GAGTC	2 cut(s)	161, 433
MnlI	CCTC	3 cut(s)	94, 250, 303
Mox20I	TGGCCA	1 cut(s)	498
Mph1103I	ATGCAT	1 cut(s)	507
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	2 cut(s)	189, 225
MslI	CAYNNNNRTG	1 cut(s)	18
Msp20I	TGGCCA	1 cut(s)	498
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	4 cut(s)	81, 147, 210, 259
NheI	GCTAGC	1 cut(s)	479
NlaIII	CATG	4 cut(s)	23, 176, 236, 509
NmuCI	GTSAC	1 cut(s)	164
NsiI	ATGCAT	1 cut(s)	507
PfeI	GAWTC	5 cut(s)	157, 220, 329, 346, 364
PflFI	GACNNNGTC	1 cut(s)	139
PleI	GAGTC	2 cut(s)	161, 432
PpsI	GAGTC	2 cut(s)	161, 432
PsiI	TTATAA	1 cut(s)	517
PsuI	RGATCY	3 cut(s)	81, 210, 259
PsyI	GACNNNGTC	1 cut(s)	139
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	189, 225
Sau3AI	GATC	4 cut(s)	81, 147, 210, 259
SchI	GAGTC	2 cut(s)	161, 433
SfaNI	GCATC	1 cut(s)	492
SmiMI	CAYNNNNRTG	1 cut(s)	18
Sse9I	AATT	2 cut(s)	177, 249
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	480
StyI	CCWWGG	1 cut(s)	19
TasI	AATT	2 cut(s)	177, 249
TfiI	GAWTC	5 cut(s)	157, 220, 329, 346, 364
Tru1I	TTAA	2 cut(s)	189, 225
Tru9I	TTAA	2 cut(s)	189, 225
TscAI	CASTG	1 cut(s)	438
TseFI	GTSAC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	1 cut(s)	479
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	438
Tth111I	GACNNNGTC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	249
XspI	CTAG	1 cut(s)	480
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.