Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002537

Physical Location & Seq

Genomic Coordinates Reverse (-)

45124349 .. 45127353

Gene Structure 3005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG209100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTCGGCTTCGGCTCTGCCCTACAAGAGGACACCTCCGAGCTGGTTGAAGATCTCCACTCAGGATGTTGAGGAGAACATTTGCAAGTTTGCCAAGAAGGGCTTGACACCATCACAAATTGGTGTCATCCTTCGTGATTCTCATGGAATTGCTCAGGTGAAGAGTGTTACTGGCAGCAAGATATTGCGTATTCTTAAGGCACACGCTCTTGCCCCCGAAATTCCAGAGGACTTGTACCACCTCATCAAGAAGGCAGTCTCCATCAGGAAGCATTTGGAGAGGAACAGGAAGGATAAGGACTCCAAATTCAGGCTGATCCTGGTTGAGAGCAGAATCCATCGCCTTGCCCGATATTACAAGAAGACAAAGAAGCTTCCACCAGTTTGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0019843 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0070181 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13_N Ribosomal_S15

Protein Analysis

130

Amino Acids

14.96

Weight (kDa)

10.34

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13_N	PF08069	1 - 50	2.3e-23	Ribosomal S13/S15 N-terminal domain
Ribosomal_S15	PF00312	64 - 124	3e-14	Ribosomal protein S15

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60770 AT4G00100
fragaria_vesca	FvH4_7g11600 FvH4_7g11600 FvH4_7g28060
malus_domestica	MD00G1099800.v1.1 MD01G1099100.v1.1 MD07G1120500.v1.1 MD07G1257100.v1.1
prunus_persica	Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G281300_v2.0.a1 Prupe.4G286400_v2.0.a1
pyrus_communis	pycom02g16750 pycom07g10470 pycom07g23000
rosa_chinensis	RchiOBHm_Chr1g0350031 RchiOBHm_Chr1g0374971
rosa_laevigata	RLG00000026702
rosa_multiflora	Rmu_sc0000554.1_g000001 Rmu_sc0003674.1_g000017 Rmu_sc0017099.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283130 Rroxscaffold_4G00305110
rosa_rugosa	Rorug01G0208100 Rorug01G0386600 Rorug01G0386700
rosa_samantha	Rh1AG224400 Rh1AG397700 Rh1BG191700 Rh1BG361800 Rh1CG209100 Rh1CG375300 Rh1DG220200 Rh1DG392700
rosa_wichuraiana	Rw1G019170 Rw1G019290 Rw1G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	219, 305
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	27, 309
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	2 cut(s)	42, 373
AluI	AGCT	2 cut(s)	42, 373
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	1 cut(s)	310
ApeKI	GCWGC	1 cut(s)	174
ApoI	RAATTY	2 cut(s)	219, 305
AsuHPI	GGTGA	1 cut(s)	169
BbsI	GAAGAC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	3 cut(s)	118, 269, 345
BciT130I	CCWGG	1 cut(s)	320
BcoDI	GTCTC	1 cut(s)	262
BfrI	CTTAAG	1 cut(s)	194
BglII	AGATCT	1 cut(s)	51
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	320
BpiI	GAAGAC	1 cut(s)	368
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
Bpu10I	CCTNAGC	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 309
Bse1I	ACTGG	2 cut(s)	175, 380
BseBI	CCWGG	1 cut(s)	320
BseGI	GGATG	2 cut(s)	70, 126
BseLI	CCNNNNNNNGG	2 cut(s)	27, 309
BseMII	CTCAG	2 cut(s)	74, 167
BseNI	ACTGG	2 cut(s)	175, 380
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	186
BslI	CCNNNNNNNGG	2 cut(s)	27, 309
BsmAI	GTCTC	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	51, 315
BspCNI	CTCAG	2 cut(s)	73, 166
BspPI	GGATC	1 cut(s)	310
BspTI	CTTAAG	1 cut(s)	194
BsrI	ACTGG	2 cut(s)	175, 380
BssMI	GATC	2 cut(s)	51, 315
Bst2UI	CCWGG	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	155
BstAFI	CTTAAG	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	60, 153
BstENI	CCTNNNNNAGG	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	70, 126
BstKTI	GATC	2 cut(s)	54, 318
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	2 cut(s)	51, 315
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	186
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	384
BstYI	RGATCY	1 cut(s)	51
BtgZI	GCGATG	1 cut(s)	323
BtsCI	GGATG	2 cut(s)	70, 126
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	6 cut(s)	8, 14, 42, 102, 313, 373
CviKI_1	RGCY	6 cut(s)	8, 14, 42, 102, 313, 373
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	60, 153
DpnI	GATC	2 cut(s)	53, 317
DpnII	GATC	2 cut(s)	51, 315
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	318
FaeI	CATG	1 cut(s)	146
FaiI	YATR	1 cut(s)	144
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FatI	CATG	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	175
FokI	GGATG	2 cut(s)	77, 113
Fsp4HI	GCNGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	3 cut(s)	137, 299, 333
HphI	GGTGA	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	5 cut(s)	62, 134, 224, 247, 265
HpyAV	CCTTC	4 cut(s)	91, 140, 244, 283
HpyCH4V	TGCA	1 cut(s)	84
HpyF3I	CTNAG	2 cut(s)	60, 153
Hsp92II	CATG	1 cut(s)	146
Kzo9I	GATC	2 cut(s)	51, 315
Lsp1109I	GCAGC	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	53, 317
MboI	GATC	2 cut(s)	51, 315
MboII	GAAGA	3 cut(s)	61, 172, 373
MflI	RGATCY	1 cut(s)	51
MluCI	AATT	4 cut(s)	117, 147, 219, 305
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	6 cut(s)	21, 45, 64, 220, 251, 273
MseI	TTAA	1 cut(s)	195
MspCI	CTTAAG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	320
NdeII	GATC	2 cut(s)	51, 315
NlaIII	CATG	1 cut(s)	146
PcsI	WCGNNNNNNNCGW	1 cut(s)	346
PfeI	GAWTC	2 cut(s)	137, 333
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	318
PspGI	CCWGG	1 cut(s)	318
PsuI	RGATCY	1 cut(s)	51
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	2 cut(s)	51, 315
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	320
SetI	ASST	5 cut(s)	37, 44, 159, 243, 375
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	4 cut(s)	117, 147, 219, 305
StyD4I	CCNGG	1 cut(s)	318
TasI	AATT	4 cut(s)	117, 147, 219, 305
TfiI	GAWTC	2 cut(s)	137, 333
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseI	GCWGC	1 cut(s)	174
Vha464I	CTTAAG	1 cut(s)	194
XagI	CCTNNNNNAGG	1 cut(s)	25
XapI	RAATTY	2 cut(s)	219, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.