Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002537

Physical Location & Seq

Genomic Coordinates Reverse (-)

24102848 .. 24104321

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGTCGAATGCACAGTCATGGAAAGGGAATGTCAGCCTCAGCGCTGCCGTACAAGAGGAGTGCGCCGAGCTGGCTGAAGGTCACTGTTCCAGATGTGGAGGAGAACATCTGCAAGTTTGCAAAGAAGGGTATGACTCCGTCTCAGATCGGTGTCATTCTCCGTGACTCTCACGGCATTGCGCAGGTTAAGACCGTTACTGGAAGCAAGATCCTGCGTGTTCTCAAGGCTCACGGTCTCGCCCCTGAAATTCCTGAGGATCTATACCATCTTATCAAGAAGGCAGTTTCAATTAGGAAGCATTTGGAGAGGAATAGGAAGGACAAGGATTCCAAGTTTCGGTTGATTTTGGTGGAGAGCAGGATCCACAGGCTTTCTCGTTACTACAAGAAAACTAAGAAGCTTCCACCCGTCTGGAAATACGAGTCAACCACTGCCAGCACTCTTGTTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0019843 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0070181 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13_N Ribosomal_S15

Protein Analysis

152

Amino Acids

17.11

Weight (kDa)

10.31

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60770 AT4G00100
fragaria_vesca	FvH4_7g11600 FvH4_7g11600 FvH4_7g28060
malus_domestica	MD00G1099800.v1.1 MD01G1099100.v1.1 MD07G1120500.v1.1 MD07G1257100.v1.1
prunus_persica	Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G281300_v2.0.a1 Prupe.4G286400_v2.0.a1
pyrus_communis	pycom02g16750 pycom07g10470 pycom07g23000
rosa_chinensis	RchiOBHm_Chr1g0350031 RchiOBHm_Chr1g0374971
rosa_laevigata	RLG00000026702
rosa_multiflora	Rmu_sc0000554.1_g000001 Rmu_sc0003674.1_g000017 Rmu_sc0017099.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283130 Rroxscaffold_4G00305110
rosa_rugosa	Rorug01G0208100 Rorug01G0386600 Rorug01G0386700
rosa_samantha	Rh1AG224400 Rh1AG397700 Rh1BG191700 Rh1BG361800 Rh1CG209100 Rh1CG375300 Rh1DG220200 Rh1DG392700
rosa_wichuraiana	Rw1G019170 Rw1G019290 Rw1G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	183
Acc36I	ACCTGC	1 cut(s)	175
AclWI	GGATC	4 cut(s)	205, 267, 358, 371
AcsI	RAATTY	1 cut(s)	249
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	53
AfeI	AGCGCT	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	339
AgsI	TTSAA	1 cut(s)	291
AluBI	AGCT	2 cut(s)	72, 403
AluI	AGCT	2 cut(s)	72, 403
Alw26I	GTCTC	2 cut(s)	147, 242
AlwI	GGATC	4 cut(s)	205, 267, 358, 371
Aor51HI	AGCGCT	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	249
ArsI	GACNNNNNNTTYG	1 cut(s)	33
AspLEI	GCGC	3 cut(s)	46, 67, 184
AxyI	CCTNAGG	1 cut(s)	255
BamHI	GGATCC	1 cut(s)	363
BbvCI	CCTCAGC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	33
BccI	CCATC	1 cut(s)	276
BceAI	ACGGC	2 cut(s)	34, 190
BcoDI	GTCTC	2 cut(s)	147, 242
BfoI	RGCGCY	1 cut(s)	47
BfuAI	ACCTGC	1 cut(s)	175
BglI	GCCNNNNNGGC	1 cut(s)	73
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	365
Bpu10I	CCTNAGC	1 cut(s)	40
BpuEI	CTTGAG	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
Bse1I	ACTGG	1 cut(s)	205
Bse21I	CCTNAGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	177
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	3 cut(s)	54, 158, 246
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	2 cut(s)	73, 116
BseXI	GCAGC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	339
BsmAI	GTCTC	2 cut(s)	147, 242
BsmBI	CGTCTC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	15
Bso31I	GGTCTC	1 cut(s)	242
Bsp143I	GATC	4 cut(s)	147, 210, 259, 363
BspCNI	CTCAG	3 cut(s)	53, 157, 247
BspLI	GGNNCC	1 cut(s)	365
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	4 cut(s)	205, 267, 358, 371
BspTNI	GGTCTC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	205
BssMI	GATC	4 cut(s)	147, 210, 259, 363
Bst4CI	ACNGT	4 cut(s)	17, 88, 196, 236
BstC8I	GCNNGC	2 cut(s)	74, 439
BstDEI	CTNAG	5 cut(s)	40, 144, 255, 396, 453
BstH2I	RGCGCY	1 cut(s)	47
BstHHI	GCGC	3 cut(s)	46, 67, 184
BstKTI	GATC	4 cut(s)	150, 213, 262, 366
BstMAI	GTCTC	2 cut(s)	147, 242
BstMBI	GATC	4 cut(s)	147, 210, 259, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	33
BstX2I	RGATCY	3 cut(s)	210, 259, 363
BstXI	CCANNNNNNTGG	1 cut(s)	414
BstYI	RGATCY	3 cut(s)	210, 259, 363
Bsu36I	CCTNAGG	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	432
BtsIMutI	CAGTG	2 cut(s)	84, 432
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	74, 439
CfoI	GCGC	3 cut(s)	46, 67, 184
Csp6I	GTAC	1 cut(s)	52
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	6 cut(s)	38, 72, 76, 230, 373, 403
CviKI_1	RGCY	6 cut(s)	38, 72, 76, 230, 373, 403
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	5 cut(s)	40, 144, 255, 396, 453
DpnI	GATC	4 cut(s)	149, 212, 261, 365
DpnII	GATC	4 cut(s)	147, 210, 259, 363
Eco31I	GGTCTC	1 cut(s)	242
Eco47III	AGCGCT	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	98
Eco81I	CCTNAGG	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	1 cut(s)	23
FaiI	YATR	3 cut(s)	21, 134, 265
FatI	CATG	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	47
Fsp4HI	GCNGC	1 cut(s)	47
FspI	TGCGCA	1 cut(s)	183
GlaI	GCGC	3 cut(s)	45, 66, 183
GluI	GCNGC	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	47
HhaI	GCGC	3 cut(s)	46, 67, 184
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	3 cut(s)	44, 65, 182
HinP1I	GCGC	3 cut(s)	44, 65, 182
HincII	GTYRAC	1 cut(s)	429
HindII	GTYRAC	1 cut(s)	429
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	4 cut(s)	136, 167, 329, 425
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	4 cut(s)	92, 254, 277, 415
Hpy8I	GTNNAC	1 cut(s)	429
HpyAV	CCTTC	4 cut(s)	73, 121, 274, 313
HpyCH4III	ACNGT	4 cut(s)	17, 88, 196, 236
HpyCH4V	TGCA	3 cut(s)	13, 114, 122
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	5 cut(s)	40, 144, 255, 396, 453
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	3 cut(s)	44, 65, 182
Kzo9I	GATC	4 cut(s)	147, 210, 259, 363
Lsp1109I	GCAGC	1 cut(s)	33
MaeIII	GTNAC	4 cut(s)	82, 164, 196, 380
MalI	GATC	4 cut(s)	149, 212, 261, 365
MboI	GATC	4 cut(s)	147, 210, 259, 363
MflI	RGATCY	3 cut(s)	210, 259, 363
MluCI	AATT	2 cut(s)	249, 291
MlyI	GAGTC	3 cut(s)	130, 161, 434
MnlI	CCTC	5 cut(s)	49, 51, 94, 250, 303
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	18
Mva1269I	GAATGC	1 cut(s)	15
MwoI	GCNNNNNNNGC	1 cut(s)	73
NdeII	GATC	4 cut(s)	147, 210, 259, 363
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	365
NmeAIII	GCCGAG	1 cut(s)	93
NmuCI	GTSAC	2 cut(s)	82, 164
NsbI	TGCGCA	1 cut(s)	183
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	329
PflFI	GACNNNGTC	1 cut(s)	139
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	3 cut(s)	130, 161, 433
PpsI	GAGTC	3 cut(s)	130, 161, 433
PspN4I	GGNNCC	1 cut(s)	365
PsuI	RGATCY	3 cut(s)	210, 259, 363
PsyI	GACNNNGTC	1 cut(s)	139
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	4 cut(s)	147, 210, 259, 363
SchI	GAGTC	3 cut(s)	130, 161, 434
SetI	ASST	4 cut(s)	74, 84, 189, 405
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	249, 291
TaaI	ACNGT	4 cut(s)	17, 88, 196, 236
TaqI	TCGA	1 cut(s)	7
TasI	AATT	2 cut(s)	249, 291
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	2 cut(s)	91, 439
TseFI	GTSAC	2 cut(s)	82, 164
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	2 cut(s)	82, 164
TspGWI	ACGGA	2 cut(s)	129, 152
TspRI	CASTG	2 cut(s)	91, 439
Tth111I	GACNNNGTC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.