Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002537

Physical Location & Seq

Genomic Coordinates Reverse (-)

49176624 .. 49179286

Gene Structure 2663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG361800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGGGCGTATGCACAGCCATGGAAAGGGTATGTCAGCTTCGGCTCTGCCCTACAAGAGAACCCCACCGAGCTGGTTGAAGATCGCTACCCCCGATGTGGAGGATAGCATTTGCAAGTTTGCGAAGAAGGGTATGACGCCGTCTCAGATCGGTGTGATTCTTCGTGACTCTCATGGGATTGCTCAGGTTAAGAGCGTTACTGGAAGCAAGATCTTGCGGATTCTTAAAGCTCATGGTCTTGCTCCTGAAATTCCTGAGGATCTGTACCACCTTATCAAGAAGGCTGTGTCAGTCAGGAAGCATTTGGAGAGGAACAGGAAGGACAAGGATTCCAAGTTTCGTTTGATTCTTGTGGAGAGCAGGATTCACAGGCTTGCTCGTTACTACAAGAGGACAAAGAAGCTCCCCCCAGTATGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0019843 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0070181 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13_N Ribosomal_S15

Protein Analysis

140

Amino Acids

15.97

Weight (kDa)

10.52

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13_N	PF08069	1 - 60	1.9e-30	Ribosomal S13/S15 N-terminal domain
Ribosomal_S15	PF00312	74 - 134	1.5e-14	Ribosomal protein S15

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60770 AT4G00100
fragaria_vesca	FvH4_7g11600 FvH4_7g11600 FvH4_7g28060
malus_domestica	MD00G1099800.v1.1 MD01G1099100.v1.1 MD07G1120500.v1.1 MD07G1257100.v1.1
prunus_persica	Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G281300_v2.0.a1 Prupe.4G286400_v2.0.a1
pyrus_communis	pycom02g16750 pycom07g10470 pycom07g23000
rosa_chinensis	RchiOBHm_Chr1g0350031 RchiOBHm_Chr1g0374971
rosa_laevigata	RLG00000026702
rosa_multiflora	Rmu_sc0000554.1_g000001 Rmu_sc0003674.1_g000017 Rmu_sc0017099.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283130 Rroxscaffold_4G00305110
rosa_rugosa	Rorug01G0208100 Rorug01G0386600 Rorug01G0386700
rosa_samantha	Rh1AG224400 Rh1AG397700 Rh1BG191700 Rh1BG361800 Rh1CG209100 Rh1CG375300 Rh1DG220200 Rh1DG392700
rosa_wichuraiana	Rw1G019170 Rw1G019290 Rw1G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	249
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	3 cut(s)	25, 97, 414
AgsI	TTSAA	1 cut(s)	79
AluBI	AGCT	4 cut(s)	38, 72, 230, 403
AluI	AGCT	4 cut(s)	38, 72, 230, 403
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	267
ApoI	RAATTY	1 cut(s)	249
AxyI	CCTNAGG	1 cut(s)	255
BarI	GAAGNNNNNNTAC	2 cut(s)	22, 54
BceAI	ACGGC	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	147
BglII	AGATCT	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	404
BmuI	ACTGGG	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 97, 414
Bse1I	ACTGG	2 cut(s)	205, 410
Bse21I	CCTNAGG	1 cut(s)	255
BseDI	CCNNGG	1 cut(s)	19
BseLI	CCNNNNNNNGG	3 cut(s)	25, 97, 414
BseMII	CTCAG	3 cut(s)	158, 197, 246
BseNI	ACTGG	2 cut(s)	205, 410
BslI	CCNNNNNNNGG	3 cut(s)	25, 97, 414
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
Bsp143I	GATC	4 cut(s)	81, 147, 210, 259
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	1 cut(s)	217
BspCNI	CTCAG	3 cut(s)	157, 196, 247
BspPI	GGATC	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	205, 410
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	4 cut(s)	81, 147, 210, 259
BssNI	GRCGYC	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	137
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	3 cut(s)	144, 183, 255
BstDSI	CCRYGG	1 cut(s)	19
BstKTI	GATC	4 cut(s)	84, 150, 213, 262
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	4 cut(s)	81, 147, 210, 259
BstX2I	RGATCY	2 cut(s)	210, 259
BstXI	CCANNNNNNTGG	1 cut(s)	72
BstYI	RGATCY	2 cut(s)	210, 259
Bsu36I	CCTNAGG	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	375
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	3 cut(s)	20, 173, 233
CviJI	RGCY	8 cut(s)	18, 38, 44, 72, 230, 284, 373, 403
CviKI_1	RGCY	8 cut(s)	18, 38, 44, 72, 230, 284, 373, 403
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	3 cut(s)	144, 183, 255
DpnI	GATC	4 cut(s)	83, 149, 212, 261
DpnII	GATC	4 cut(s)	81, 147, 210, 259
Eco130I	CCWWGG	1 cut(s)	19
Eco81I	CCTNAGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	3 cut(s)	23, 176, 236
FaiI	YATR	7 cut(s)	11, 21, 32, 134, 174, 234, 415
FatI	CATG	3 cut(s)	19, 172, 232
HgaI	GACGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	3 cut(s)	23, 176, 236
HinfI	GANTC	6 cut(s)	157, 167, 220, 329, 346, 364
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	5 cut(s)	164, 245, 254, 277, 295
HpyAV	CCTTC	3 cut(s)	121, 274, 313
HpyCH4V	TGCA	2 cut(s)	13, 114
HpyF3I	CTNAG	3 cut(s)	144, 183, 255
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	3 cut(s)	23, 176, 236
Kzo9I	GATC	4 cut(s)	81, 147, 210, 259
LmnI	GCTCC	2 cut(s)	247, 408
LpnPI	CCDG	9 cut(s)	58, 170, 186, 258, 267, 280, 301, 346, 355
MaeIII	GTNAC	3 cut(s)	164, 196, 380
MalI	GATC	4 cut(s)	83, 149, 212, 261
MboI	GATC	4 cut(s)	81, 147, 210, 259
MboII	GAAGA	3 cut(s)	91, 136, 152
MflI	RGATCY	2 cut(s)	210, 259
MluCI	AATT	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	4 cut(s)	94, 250, 303, 384
MseI	TTAA	2 cut(s)	189, 225
MslI	CAYNNNNRTG	1 cut(s)	18
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	4 cut(s)	81, 147, 210, 259
NlaIII	CATG	3 cut(s)	23, 176, 236
NmuCI	GTSAC	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PfeI	GAWTC	5 cut(s)	157, 220, 329, 346, 364
PflFI	GACNNNGTC	1 cut(s)	139
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PsuI	RGATCY	2 cut(s)	210, 259
PsyI	GACNNNGTC	1 cut(s)	139
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	2 cut(s)	189, 225
Sau3AI	GATC	4 cut(s)	81, 147, 210, 259
SchI	GAGTC	1 cut(s)	161
SetI	ASST	6 cut(s)	40, 74, 189, 232, 273, 405
SmiMI	CAYNNNNRTG	1 cut(s)	18
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	19
TasI	AATT	1 cut(s)	249
TfiI	GAWTC	5 cut(s)	157, 220, 329, 346, 364
Tru1I	TTAA	2 cut(s)	189, 225
Tru9I	TTAA	2 cut(s)	189, 225
TseFI	GTSAC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	164
Tth111I	GACNNNGTC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.