Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002537

Physical Location & Seq

Genomic Coordinates Forward (+)

49816913 .. 49817506

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0386600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAAGAGAAGCTATGACGACAGCCATTGCTCTGCAAACGCTACCTCGAACAACAACACCAGCCGTAATAAGTGCAGAGCAACGGCCGATATGAAAAGGAAAAAGATTATACGACAAAGAACATTTGACGGTGTTGATTTGTTTCTTGAGCTCGACAGAGTCGTCCTACTTGACCCCCCAAGTCTCTGGACTTTACCCCTTTCCGAACGGCGCTACCAAGTGGTGTGGTGGATTGAGCCCGACGGAGAAAAGCAAATGTCTGTCAAGGTTACAGGGTCACCAAACCCTAAATGGGACACAAGGTGGTTCGTTGGATTAAAGGGCAACCCTGTGGGTGAGGACCACTCTGTGAACATAGAGGTCTTGAGGTATAACAGCAAGAAAAACCGCTGCGACCCCGGAACCTCCGACGACCCCAGCATTGGGGAAGTGATTCGGGCTAGGGTTCCGTTTCCGAAGAGGCTCGAGCAGACAATAGAAGGGCGTTATGAACTTGTGAAGCCTGATGGAGCCGGGAACATGAAGCCCGCTGGGGATATAGTATTGACGATGTCGCTGGAGACCTGGACCAAGGACTATTACAGATGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0019538 GO:0019843 GO:0022626 GO:0022627 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0070181 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13_N Ribosomal_S15

Protein Analysis

197

Amino Acids

22.72

Weight (kDa)

8.92

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60770 AT4G00100
fragaria_vesca	FvH4_7g11600 FvH4_7g11600 FvH4_7g28060
malus_domestica	MD00G1099800.v1.1 MD01G1099100.v1.1 MD07G1120500.v1.1 MD07G1257100.v1.1
prunus_persica	Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G000700_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G144200_v2.0.a1 Prupe.2G281300_v2.0.a1 Prupe.4G286400_v2.0.a1
pyrus_communis	pycom02g16750 pycom07g10470 pycom07g23000
rosa_chinensis	RchiOBHm_Chr1g0350031 RchiOBHm_Chr1g0374971
rosa_laevigata	RLG00000026702
rosa_multiflora	Rmu_sc0000554.1_g000001 Rmu_sc0003674.1_g000017 Rmu_sc0017099.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283130 Rroxscaffold_4G00305110
rosa_rugosa	Rorug01G0208100 Rorug01G0386600 Rorug01G0386700
rosa_samantha	Rh1AG224400 Rh1AG397700 Rh1BG191700 Rh1BG361800 Rh1CG209100 Rh1CG375300 Rh1DG220200 Rh1DG392700
rosa_wichuraiana	Rw1G019170 Rw1G019290 Rw1G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	161
AciI	CCGC	2 cut(s)	388, 528
AcoI	YGGCCR	1 cut(s)	84
AdeI	CACNNNGTG	2 cut(s)	303, 349
AfiI	CCNNNNNNNGG	3 cut(s)	292, 422, 423
AjnI	CCWGG	1 cut(s)	563
AluBI	AGCT	2 cut(s)	12, 151
AluI	AGCT	2 cut(s)	12, 151
Alw21I	GWGCWC	1 cut(s)	153
Alw26I	GTCTC	2 cut(s)	188, 554
Ama87I	CYCGRG	1 cut(s)	464
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	2 cut(s)	340, 567
AsuC2I	CCSGG	2 cut(s)	399, 514
AsuHPI	GGTGA	2 cut(s)	270, 347
AvaI	CYCGRG	1 cut(s)	464
AvaII	GGWCC	2 cut(s)	340, 567
BanII	GRGCYC	2 cut(s)	153, 240
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	2 cut(s)	500, 579
BceAI	ACGGC	3 cut(s)	48, 99, 224
BciT130I	CCWGG	1 cut(s)	565
BcnI	CCSGG	2 cut(s)	399, 514
BcoDI	GTCTC	2 cut(s)	188, 554
BfaI	CTAG	1 cut(s)	441
BfoI	RGCGCY	1 cut(s)	214
BisI	GCNGC	1 cut(s)	391
BlsI	GCNGC	1 cut(s)	392
Bme1390I	CCNGG	3 cut(s)	399, 514, 565
Bme18I	GGWCC	2 cut(s)	340, 567
BmeT110I	CYCGRG	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	340, 567
BmiI	GGNNCC	3 cut(s)	403, 447, 511
BmrFI	CCNGG	3 cut(s)	399, 514, 565
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
BpmI	CTGGAG	1 cut(s)	578
BpuEI	CTTGAG	2 cut(s)	167, 385
BpuMI	CCSGG	2 cut(s)	399, 514
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	2 cut(s)	397, 570
Bsc4I	CCNNNNNNNGG	3 cut(s)	292, 422, 423
Bse3DI	GCAATG	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	565
BseDI	CCNNGG	2 cut(s)	397, 570
BseLI	CCNNNNNNNGG	3 cut(s)	292, 422, 423
BseMI	GCAATG	1 cut(s)	25
BseX3I	CGGCCG	1 cut(s)	84
BseXI	GCAGC	1 cut(s)	377
BseYI	CCCAGC	2 cut(s)	416, 530
BsgI	GTGCAG	1 cut(s)	94
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	86
BsiEI	CGRYCG	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	464
BsiSI	CCGG	2 cut(s)	399, 513
BslFI	GGGAC	1 cut(s)	308
BslI	CCNNNNNNNGG	3 cut(s)	292, 422, 423
BsmAI	GTCTC	2 cut(s)	188, 554
BsmFI	GGGAC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	554
BsoBI	CYCGRG	1 cut(s)	464
Bsp1286I	GDGCHC	2 cut(s)	153, 240
BspACI	CCGC	2 cut(s)	388, 528
BspANI	GGCC	1 cut(s)	86
BspLI	GGNNCC	3 cut(s)	403, 447, 511
BspTNI	GGTCTC	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	397, 570
BssT1I	CCWWGG	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	565
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	528
BstEII	GGTNACC	1 cut(s)	276
BstH2I	RGCGCY	1 cut(s)	214
BstHHI	GCGC	1 cut(s)	213
BstMAI	GTCTC	2 cut(s)	188, 554
BstMCI	CGRYCG	1 cut(s)	87
BstNI	CCWGG	1 cut(s)	565
BstPI	GGTNACC	1 cut(s)	276
BstSCI	CCNGG	3 cut(s)	397, 512, 563
BstV1I	GCAGC	1 cut(s)	377
BstXI	CCANNNNNNTGG	1 cut(s)	186
BstZI	CGGCCG	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	528
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	2 cut(s)	340, 567
CspCI	CAANNNNNGTGG	2 cut(s)	206, 241
CviAII	CATG	1 cut(s)	520
DraIII	CACNNNGTG	2 cut(s)	303, 349
DrdI	GACNNNNNNGTC	1 cut(s)	161
DseDI	GACNNNNNNGTC	1 cut(s)	161
EaeI	YGGCCR	1 cut(s)	84
EagI	CGGCCG	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	452
EarI	CTCTTC	1 cut(s)	452
Ecl136II	GAGCTC	1 cut(s)	151
EclXI	CGGCCG	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	570
Eco24I	GRGCYC	2 cut(s)	153, 240
Eco31I	GGTCTC	1 cut(s)	554
Eco47I	GGWCC	2 cut(s)	340, 567
Eco52I	CGGCCG	1 cut(s)	84
Eco53kI	GAGCTC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	464
Eco91I	GGTNACC	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	151
EcoO65I	GGTNACC	1 cut(s)	276
EcoRII	CCWGG	1 cut(s)	563
EcoT14I	CCWWGG	1 cut(s)	570
EcoT38I	GRGCYC	2 cut(s)	153, 240
ErhI	CCWWGG	1 cut(s)	570
FaeI	CATG	1 cut(s)	523
FaiI	YATR	8 cut(s)	15, 92, 110, 356, 372, 489, 521, 539
FaqI	GGGAC	1 cut(s)	308
FatI	CATG	1 cut(s)	519
FauI	CCCGC	1 cut(s)	535
Fnu4HI	GCNGC	1 cut(s)	391
FriOI	GRGCYC	2 cut(s)	153, 240
Fsp4HI	GCNGC	1 cut(s)	391
FspBI	CTAG	1 cut(s)	441
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	1 cut(s)	391
GsaI	CCCAGC	2 cut(s)	420, 534
GsuI	CTGGAG	1 cut(s)	578
HaeII	RGCGCY	1 cut(s)	214
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	2 cut(s)	399, 513
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	1 cut(s)	523
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	159, 433
HpaII	CCGG	2 cut(s)	399, 513
HphI	GGTGA	2 cut(s)	270, 347
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	3 cut(s)	205, 409, 456
Hpy188III	TCNNGA	3 cut(s)	146, 187, 364
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	2 cut(s)	245, 413
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	35, 75
Hsp92II	CATG	1 cut(s)	523
HspAI	GCGC	1 cut(s)	211
LmnI	GCTCC	1 cut(s)	509
Lsp1109I	GCAGC	1 cut(s)	377
MaeI	CTAG	1 cut(s)	441
MaeIII	GTNAC	2 cut(s)	268, 276
MboII	GAAGA	2 cut(s)	16, 469
MhlI	GDGCHC	2 cut(s)	153, 240
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	2 cut(s)	292, 432
MnlI	CCTC	6 cut(s)	55, 331, 352, 360, 415, 453
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	1 cut(s)	317
MspA1I	CMGCKG	2 cut(s)	390, 530
MspI	CCGG	2 cut(s)	399, 513
MspR9I	CCNGG	3 cut(s)	399, 514, 565
MvaI	CCWGG	1 cut(s)	565
NciI	CCSGG	2 cut(s)	399, 514
NlaIII	CATG	1 cut(s)	523
NlaIV	GGNNCC	3 cut(s)	403, 447, 511
NmuCI	GTSAC	1 cut(s)	276
PaeR7I	CTCGAG	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	433
PflFI	GACNNNGTC	2 cut(s)	158, 550
PkrI	GCNGC	1 cut(s)	392
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	563
PspEI	GGTNACC	1 cut(s)	276
PspFI	CCCAGC	2 cut(s)	416, 530
PspGI	CCWGG	1 cut(s)	563
PspN4I	GGNNCC	3 cut(s)	403, 447, 511
PspPI	GGNCC	2 cut(s)	340, 567
PspXI	VCTCGAGB	1 cut(s)	464
PsyI	GACNNNGTC	2 cut(s)	158, 550
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	1 cut(s)	391
Sau96I	GGNCC	2 cut(s)	340, 567
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	3 cut(s)	399, 514, 565
SduI	GDGCHC	2 cut(s)	153, 240
SetI	ASST	9 cut(s)	14, 47, 153, 270, 305, 363, 371, 407, 566
Sfr274I	CTCGAG	1 cut(s)	464
SinI	GGWCC	2 cut(s)	340, 567
SlaI	CTCGAG	1 cut(s)	464
SmlI	CTYRAG	3 cut(s)	146, 364, 464
SmoI	CTYRAG	3 cut(s)	146, 364, 464
SsiI	CCGC	2 cut(s)	388, 528
SspMI	CTAG	1 cut(s)	441
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	3 cut(s)	397, 512, 563
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	1 cut(s)	131
TaqI	TCGA	3 cut(s)	47, 153, 465
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TseFI	GTSAC	1 cut(s)	276
TseI	GCWGC	1 cut(s)	390
Tsp45I	GTSAC	1 cut(s)	276
TspDTI	ATGAA	4 cut(s)	17, 107, 504, 536
TspGWI	ACGGA	2 cut(s)	258, 438
Tth111I	GACNNNGTC	2 cut(s)	158, 550
VpaK11BI	GGWCC	2 cut(s)	340, 567
XcmI	CCANNNNNNNNNTGG	1 cut(s)	288
XhoI	CTCGAG	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.