Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007988

Physical Location & Seq

Genomic Coordinates Forward (+)

22473983 .. 22476445

Gene Structure 2463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAAGCACTAGTTGTTGATGCTGGCTCTAAGTTCCTGAAAGCAGGAGCAGCAATTCCTGACCAGTCTCCTGCAATGATAATTCCCTCTCAAATGAAACGAATGGTTGATGATGGGTCTTCTTCAGCTGATAACCCCACCACTGTCTTTGAGGATGTCACTCTTGATCCTATTGAAAGGGGTTTGATTAGAGATTGGGATGCTATGGAAGATCTGTTGCGTTATGTTGTCTACACTGGGCTTGGATGGGAAGAGGGAAACGAAGGCAATATACTTTTTACAGATCCACTTTGTACTCCTAAGGCTATTAGGGAGCAATTGGTGCAGTTGATGTTTGAAACATTCAATGTCTCTGGATTTTATGCATCTGAGCAAGCAGTGTTGTCCCTTTATGCTGTTGGACGCATCTCCGGTTGCACTGTTGATATTGGTCATGGGAAGATAGATATTGCCCCAGTTCTTGAAGGTGCAGTACAACACATTGCCTCGAAACGGTTTGAGCTAGGTGGAACCGAGCTAACTAAATTATTTGCCCAAGAGCTTGGAAAAACCAACCCGTCGATGAATCTCAGCATGTCTGATGTTGAAAAACTCAAGGAGCAGTATGCAAACTGTGCCGAGGACGAAATTGCTTACAAAAAAACCCAAAACTGTGAAATCGAGCAGCATACTCTTCCTGATGGACAGGTGATAAGCATCGGGCGAGAGAGATACTCGGTTGGAGAAGCTCTGTTTCAGCCATCAATACTGGGACTGGAGGAGCATGGAATCGTTGAGCAGCTTGTCCGGATTATCTCCACAGTGTCATCTGAGAACCATAGGCAGCTCTTGGAGAACACTGTACTTTGTGGTGGTACAACCTCCATGACAGGATTCGAAAGTAGATTCCAGAAAGAAGCAAACTTGTGCTCATCTGCCATTAGGCCAACACTGGTGAAACCGCCAGAATATATGCCGGAGAATTTGGGGATGTATTCGGCTTGGGTTGGAGGAGCCATACTAGCTAAAGTGGTGTTTCCGCAGAATCAGCACGTTACTAAAGCAGATTATGACGAGACTGGACCATCAGTGGTTCACAGGAAATGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010154 GO:0010227 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

363

Amino Acids

39.9

Weight (kDa)

4.81

Isoelectric Point (pI)

40.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	2 - 363	9.1e-68	Actin
FtsA	PF14450	139 - 309	2.4e-06	Cell division protein FtsA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60830
fragaria_vesca	FvH4_7g01150 FvH4_7g01150 FvH4_7g01150 FvH4_7g01150
malus_domestica	MD02G1309300.v1.1 MD07G1012400.v1.1
prunus_persica	Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1
pyrus_communis	pycom07g01000
rosa_chinensis	RchiOBHm_Chr1g0316421
rosa_laevigata	RLG00000030675
rosa_multiflora	Rmu_sc0007485.1_g000001 Rmu_sc0008729.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331030
rosa_rugosa	Rorug01G0010300 Rorug01G0010400
rosa_samantha	Rh1AG020200 Rh1BG015400 Rh1DG015400
rosa_wichuraiana	Rw0G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	231
AccIII	TCCGGA	1 cut(s)	786
AciI	CCGC	2 cut(s)	941, 1019
AclWI	GGATC	2 cut(s)	161, 278
AcsI	RAATTY	1 cut(s)	961
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	4 cut(s)	295, 474, 843, 856
AfiI	CCNNNNNNNGG	1 cut(s)	492
AgsI	TTSAA	5 cut(s)	176, 338, 346, 464, 587
AhlI	ACTAGT	1 cut(s)	10
AluBI	AGCT	8 cut(s)	128, 502, 517, 541, 728, 781, 826, 1004
AluI	AGCT	8 cut(s)	128, 502, 517, 541, 728, 781, 826, 1004
Alw21I	GWGCWC	1 cut(s)	911
Alw26I	GTCTC	3 cut(s)	72, 355, 1049
AlwI	GGATC	2 cut(s)	161, 278
Aor13HI	TCCGGA	1 cut(s)	786
AoxI	GGCC	1 cut(s)	923
ApeKI	GCWGC	4 cut(s)	50, 664, 778, 823
ApoI	RAATTY	1 cut(s)	961
Asp700I	GAANNNNTTC	1 cut(s)	1085
AspS9I	GGNCC	1 cut(s)	1061
AsuHPI	GGTGA	2 cut(s)	700, 946
AsuII	TTCGAA	1 cut(s)	876
AvaII	GGWCC	1 cut(s)	1061
AxyI	CCTNAGG	1 cut(s)	300
BarI	GAAGNNNNNNTAC	4 cut(s)	255, 287, 456, 488
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	911
BbvI	GCAGC	4 cut(s)	62, 676, 790, 835
BccI	CCATC	5 cut(s)	107, 240, 674, 748, 1072
BcoDI	GTCTC	3 cut(s)	72, 355, 1049
BcuI	ACTAGT	1 cut(s)	10
BfaI	CTAG	3 cut(s)	11, 503, 1001
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	4 cut(s)	51, 665, 779, 824
BlsI	GCNGC	4 cut(s)	52, 666, 780, 825
Bme18I	GGWCC	1 cut(s)	1061
BmgT120I	GGNCC	1 cut(s)	1061
BmiI	GGNNCC	2 cut(s)	511, 994
BmrI	ACTGGG	3 cut(s)	246, 449, 758
BmsI	GCATC	5 cut(s)	10, 190, 374, 414, 705
BmuI	ACTGGG	3 cut(s)	246, 449, 758
BpiI	GAAGAC	1 cut(s)	111
BplI	GAGNNNNNCTC	2 cut(s)	698, 730
BpmI	CTGGAG	1 cut(s)	776
Bpu14I	TTCGAA	1 cut(s)	876
BpuEI	CTTGAG	1 cut(s)	578
BsaBI	GATNNNNATC	1 cut(s)	695
BsaJI	CCNNGG	1 cut(s)	618
BsaWI	WCCGGW	2 cut(s)	410, 786
Bsc4I	CCNNNNNNNGG	1 cut(s)	492
Bse1I	ACTGG	7 cut(s)	64, 241, 455, 753, 759, 936, 1063
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	2 cut(s)	81, 480
Bse8I	GATNNNNATC	1 cut(s)	695
BseAI	TCCGGA	1 cut(s)	786
BseDI	CCNNGG	1 cut(s)	618
BseGI	GGATG	4 cut(s)	160, 205, 251, 975
BseJI	GATNNNNATC	1 cut(s)	695
BseLI	CCNNNNNNNGG	1 cut(s)	492
BseMI	GCAATG	2 cut(s)	81, 480
BseMII	CTCAG	3 cut(s)	360, 583, 801
BseNI	ACTGG	7 cut(s)	64, 241, 455, 753, 759, 936, 1063
BseRI	GAGGAG	2 cut(s)	773, 1005
BseXI	GCAGC	4 cut(s)	62, 676, 790, 835
BsgI	GTGCAG	2 cut(s)	344, 489
BshFI	GGCC	1 cut(s)	925
BsiHKAI	GWGCWC	1 cut(s)	911
BsiSI	CCGG	3 cut(s)	411, 787, 956
BslFI	GGGAC	2 cut(s)	370, 765
BslI	CCNNNNNNNGG	1 cut(s)	492
BsmAI	GTCTC	3 cut(s)	72, 355, 1049
BsmFI	GGGAC	2 cut(s)	370, 765
BsnI	GGCC	1 cut(s)	925
Bsp119I	TTCGAA	1 cut(s)	876
Bsp1286I	GDGCHC	1 cut(s)	911
Bsp13I	TCCGGA	1 cut(s)	786
Bsp143I	GATC	3 cut(s)	166, 211, 283
BspACI	CCGC	2 cut(s)	941, 1019
BspANI	GGCC	1 cut(s)	925
BspCNI	CTCAG	3 cut(s)	361, 582, 802
BspEI	TCCGGA	1 cut(s)	786
BspLI	GGNNCC	2 cut(s)	511, 994
BspPI	GGATC	2 cut(s)	161, 278
BspT104I	TTCGAA	1 cut(s)	876
BsrDI	GCAATG	2 cut(s)	81, 480
BsrI	ACTGG	7 cut(s)	64, 241, 455, 753, 759, 936, 1063
BssECI	CCNNGG	1 cut(s)	618
BssMI	GATC	3 cut(s)	166, 211, 283
Bst4CI	ACNGT	7 cut(s)	145, 421, 495, 614, 653, 802, 841
Bst6I	CTCTTC	2 cut(s)	246, 678
BstAPI	GCANNNNNTGC	2 cut(s)	322, 614
BstBI	TTCGAA	1 cut(s)	876
BstC8I	GCNNGC	2 cut(s)	25, 375
BstDEI	CTNAG	5 cut(s)	30, 300, 369, 569, 810
BstF5I	GGATG	4 cut(s)	160, 205, 251, 975
BstKTI	GATC	3 cut(s)	169, 214, 286
BstMAI	GTCTC	3 cut(s)	72, 355, 1049
BstMBI	GATC	3 cut(s)	166, 211, 283
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 322, 614, 1001, 1027
BstNSI	RCATGY	1 cut(s)	577
BstV1I	GCAGC	4 cut(s)	62, 676, 790, 835
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	2 cut(s)	211, 283
BstXI	CCANNNNNNTGG	1 cut(s)	542
BstYI	RGATCY	2 cut(s)	211, 283
Bsu36I	CCTNAGG	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	925
BtsCI	GGATG	4 cut(s)	160, 205, 251, 975
BtsI	GCAGTG	1 cut(s)	384
BtsIMutI	CAGTG	8 cut(s)	141, 234, 384, 417, 807, 837, 929, 1074
Cac8I	GCNNGC	2 cut(s)	25, 375
Cfr13I	GGNCC	1 cut(s)	1061
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	4 cut(s)	294, 473, 842, 855
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	4 cut(s)	434, 574, 764, 865
CviQI	GTAC	4 cut(s)	294, 473, 842, 855
DdeI	CTNAG	5 cut(s)	30, 300, 369, 569, 810
DpnI	GATC	3 cut(s)	168, 213, 285
DpnII	GATC	3 cut(s)	166, 211, 283
Eam1104I	CTCTTC	2 cut(s)	246, 678
EarI	CTCTTC	2 cut(s)	246, 678
Eco47I	GGWCC	1 cut(s)	1061
Eco57I	CTGAAG	1 cut(s)	108
Eco81I	CCTNAGG	1 cut(s)	300
EcoT22I	ATGCAT	1 cut(s)	367
FaeI	CATG	4 cut(s)	437, 577, 767, 868
FaqI	GGGAC	2 cut(s)	370, 765
FatI	CATG	4 cut(s)	433, 573, 763, 864
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	51, 665, 779, 824
FokI	GGATG	4 cut(s)	167, 212, 258, 982
Fsp4HI	GCNGC	4 cut(s)	51, 665, 779, 824
FspBI	CTAG	3 cut(s)	11, 503, 1001
GluI	GCNGC	4 cut(s)	51, 665, 779, 824
GsuI	CTGGAG	1 cut(s)	776
HaeIII	GGCC	1 cut(s)	925
HapII	CCGG	3 cut(s)	411, 787, 956
HgaI	GACGC	1 cut(s)	411
Hin1II	CATG	4 cut(s)	437, 577, 767, 868
HinfI	GANTC	5 cut(s)	565, 768, 873, 885, 1024
HpaII	CCGG	3 cut(s)	411, 787, 956
HphI	GGTGA	2 cut(s)	700, 946
Hpy166II	GTNNAC	2 cut(s)	232, 1075
Hpy188I	TCNGA	4 cut(s)	370, 580, 811, 1091
Hpy188III	TCNNGA	8 cut(s)	37, 59, 164, 354, 461, 677, 787, 889
Hpy8I	GTNNAC	2 cut(s)	232, 1075
Hpy99I	CGWCG	1 cut(s)	562
HpyAV	CCTTC	2 cut(s)	257, 458
HpyCH4III	ACNGT	7 cut(s)	145, 421, 495, 614, 653, 802, 841
HpyCH4IV	ACGT	1 cut(s)	1032
HpyCH4V	TGCA	6 cut(s)	74, 325, 365, 417, 470, 608
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 322, 614, 1001, 1027
HpyF3I	CTNAG	5 cut(s)	30, 300, 369, 569, 810
HpySE526I	ACGT	1 cut(s)	1032
Hsp92II	CATG	4 cut(s)	437, 577, 767, 868
Kpn2I	TCCGGA	1 cut(s)	786
Kzo9I	GATC	3 cut(s)	166, 211, 283
LmnI	GCTCC	5 cut(s)	47, 313, 598, 760, 992
Lsp1109I	GCAGC	4 cut(s)	62, 676, 790, 835
LweI	GCATC	5 cut(s)	10, 190, 374, 414, 705
MaeI	CTAG	3 cut(s)	11, 503, 1001
MaeII	ACGT	1 cut(s)	1032
MaeIII	GTNAC	2 cut(s)	157, 1033
MalI	GATC	3 cut(s)	168, 213, 285
MboI	GATC	3 cut(s)	166, 211, 283
MboII	GAAGA	6 cut(s)	111, 114, 221, 263, 451, 665
MfeI	CAATTG	1 cut(s)	317
MflI	RGATCY	2 cut(s)	211, 283
MhlI	GDGCHC	1 cut(s)	911
MluCI	AATT	6 cut(s)	54, 81, 317, 524, 627, 961
MmeI	TCCRAC	3 cut(s)	379, 700, 967
MnlI	CCTC	8 cut(s)	97, 145, 247, 496, 613, 751, 871, 983
Mph1103I	ATGCAT	1 cut(s)	367
MroI	TCCGGA	1 cut(s)	786
MroXI	GAANNNNTTC	1 cut(s)	1085
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	3 cut(s)	411, 787, 956
MunI	CAATTG	1 cut(s)	317
MwoI	GCNNNNNNNGC	5 cut(s)	50, 322, 614, 1001, 1027
NdeII	GATC	3 cut(s)	166, 211, 283
NlaIII	CATG	4 cut(s)	437, 577, 767, 868
NlaIV	GGNNCC	2 cut(s)	511, 994
NmeAIII	GCCGAG	1 cut(s)	643
NmuCI	GTSAC	1 cut(s)	157
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	1 cut(s)	577
NspV	TTCGAA	1 cut(s)	876
PdmI	GAANNNNTTC	1 cut(s)	1085
PfeI	GAWTC	5 cut(s)	565, 768, 873, 885, 1024
PkrI	GCNGC	4 cut(s)	52, 666, 780, 825
PspN4I	GGNNCC	2 cut(s)	511, 994
PspPI	GGNCC	1 cut(s)	1061
PsuI	RGATCY	2 cut(s)	211, 283
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	4 cut(s)	295, 474, 843, 856
RsaNI	GTAC	4 cut(s)	294, 473, 842, 855
SatI	GCNGC	4 cut(s)	51, 665, 779, 824
Sau3AI	GATC	3 cut(s)	166, 211, 283
Sau96I	GGNCC	1 cut(s)	1061
SduI	GDGCHC	1 cut(s)	911
SfaNI	GCATC	5 cut(s)	10, 190, 374, 414, 705
SfuI	TTCGAA	1 cut(s)	876
SinI	GGWCC	1 cut(s)	1061
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
SpeI	ACTAGT	1 cut(s)	10
Sse9I	AATT	6 cut(s)	54, 81, 317, 524, 627, 961
SsiI	CCGC	2 cut(s)	941, 1019
SspMI	CTAG	3 cut(s)	11, 503, 1001
TaaI	ACNGT	7 cut(s)	145, 421, 495, 614, 653, 802, 841
TaiI	ACGT	1 cut(s)	1035
TaqI	TCGA	4 cut(s)	488, 560, 660, 876
TasI	AATT	6 cut(s)	54, 81, 317, 524, 627, 961
TatI	WGTACW	3 cut(s)	293, 472, 841
TfiI	GAWTC	5 cut(s)	565, 768, 873, 885, 1024
TscAI	CASTG	8 cut(s)	148, 241, 384, 424, 807, 844, 936, 1074
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	4 cut(s)	50, 664, 778, 823
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	110, 578
TspRI	CASTG	8 cut(s)	148, 241, 384, 424, 807, 844, 936, 1074
VpaK11BI	GGWCC	1 cut(s)	1061
XapI	RAATTY	1 cut(s)	961
XceI	RCATGY	1 cut(s)	577
XmiI	GTMKAC	1 cut(s)	231
XmnI	GAANNNNTTC	1 cut(s)	1085
XspI	CTAG	3 cut(s)	11, 503, 1001
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.