Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007485.1

Orthogroup ID

OG0007988

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 6547

Gene Structure 6547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007485.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ggtcccgccgttcccgatcaagcccctgccatgataattccaaaccaaatgaagcgcatggctgaggatggatcaatgaatgatagttcatcatttgaagatataattgttgatccagttgtgcgtggtcttattaaagattgggatgccatggaagatttgttgcatcatattttatacactggcctcggatgggaaatgggcaatgaaggacagatattatttactgatccactctgtactcccaaggctgtcagggaacagttggttcaactgatgtttgaaacgtttaatatatcgggcttctatgcatcagagcaagcagtattgtcactttatgctgtaggacgtatctcgggatgcactgtcgatattggccatgggaagatagatattgcgccagtaattgaaggggctgttcagcacattgcctcaagaaggtttgaaattggaggtattgatttgacgaagttactcgctgaagagcttgggaagtccaatcctctggtgactttaaagatgtctgatgttgagaaaataaaagagcaatattcatgttgtgctgatgatgaacttgcttatgaaaagattaaaagatcatgccaggcggaacaacacactcttcccgatggacaggtcatcactattggaagagaaaggtataccgttggtgaggctttattccaaccatcaatattgggtttagaggctcatggaattgtggagcagcttgttcgttgtatttcaacagtatcgtctgataatcaccgccagttgctggaaaatactgtactgtgtggcggcactgcttctatgactggttttgaagaaaggttccagaaagaagctggtttatgctcatctgctgtccgccctgctttaattaagcctccagaatacatgccagagaatttgacaaattattcagcatgggtgggaggtgccatacttgcgaaagttgtgtttccacaaaatcagcatgttaccaaagcagactatgatgaaaatggaccttctgttgttcaccggaaatgcttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010154 GO:0010227 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

346

Amino Acids

38.04

Weight (kDa)

4.96

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60830
fragaria_vesca	FvH4_7g01150 FvH4_7g01150 FvH4_7g01150 FvH4_7g01150
malus_domestica	MD02G1309300.v1.1 MD07G1012400.v1.1
prunus_persica	Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1
pyrus_communis	pycom07g01000
rosa_chinensis	RchiOBHm_Chr1g0316421
rosa_laevigata	RLG00000030675
rosa_multiflora	Rmu_sc0007485.1_g000001 Rmu_sc0008729.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331030
rosa_rugosa	Rorug01G0010300 Rorug01G0010400
rosa_samantha	Rh1AG020200 Rh1BG015400 Rh1DG015400
rosa_wichuraiana	Rw0G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	941
AccB7I	CCANNNNNTGG	1 cut(s)	778
AccI	GTMKAC	1 cut(s)	662
AciI	CCGC	5 cut(s)	6, 608, 769, 801, 871
AclI	AACGTT	1 cut(s)	287
AclWI	GGATC	3 cut(s)	79, 107, 224
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	1 cut(s)	910
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	2 cut(s)	241, 792
AfiI	CCNNNNNNNGG	3 cut(s)	193, 438, 778
AgsI	TTSAA	7 cut(s)	98, 272, 284, 410, 446, 747, 827
AjnI	CCWGG	1 cut(s)	603
AluBI	AGCT	3 cut(s)	487, 730, 848
AluI	AGCT	3 cut(s)	487, 730, 848
AlwI	GGATC	3 cut(s)	79, 107, 224
AlwNI	CAGNNNCTG	1 cut(s)	778
Ama87I	CYCGRG	1 cut(s)	355
AoxI	GGCC	2 cut(s)	184, 376
ApeKI	GCWGC	1 cut(s)	727
ApoI	RAATTY	1 cut(s)	910
Asp700I	GAANNNNTTC	1 cut(s)	1034
AspLEI	GCGC	2 cut(s)	57, 400
AspS9I	GGNCC	2 cut(s)	2, 1010
AsuHPI	GGTGA	4 cut(s)	520, 683, 758, 1016
AvaI	CYCGRG	1 cut(s)	355
AvaII	GGWCC	2 cut(s)	2, 1010
BalI	TGGCCA	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	941
BbvCI	CCTCAGC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	739
BccI	CCATC	4 cut(s)	62, 186, 623, 697
BcgI	CGANNNNNNTGC	2 cut(s)	716, 750
BciT130I	CCWGG	1 cut(s)	605
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	2 cut(s)	728, 802
BlsI	GCNGC	2 cut(s)	729, 803
Bme1390I	CCNGG	1 cut(s)	605
Bme18I	GGWCC	2 cut(s)	2, 1010
BmeT110I	CYCGRG	1 cut(s)	355
BmgT120I	GGNCC	2 cut(s)	2, 1010
BmiI	GGNNCC	3 cut(s)	4, 836, 943
BmrFI	CCNGG	1 cut(s)	605
BmsI	GCATC	4 cut(s)	136, 175, 320, 350
BpmI	CTGGAG	1 cut(s)	876
Bpu10I	CCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	418
BsaJI	CCNNGG	4 cut(s)	150, 187, 246, 379
BsaWI	WCCGGW	1 cut(s)	1026
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 438, 778
Bse1I	ACTGG	5 cut(s)	116, 187, 401, 772, 823
Bse3DI	GCAATG	2 cut(s)	211, 426
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	4 cut(s)	150, 187, 246, 379
BseGI	GGATG	4 cut(s)	73, 151, 197, 365
BseLI	CCNNNNNNNGG	3 cut(s)	193, 438, 778
BseMI	GCAATG	2 cut(s)	211, 426
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	5 cut(s)	116, 187, 401, 772, 823
BseXI	GCAGC	1 cut(s)	739
BshFI	GGCC	2 cut(s)	186, 378
BshNI	GGYRCC	1 cut(s)	941
BsiHKCI	CYCGRG	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	1027
BslI	CCNNNNNNNGG	3 cut(s)	193, 438, 778
BsnI	GGCC	2 cut(s)	186, 378
BsoBI	CYCGRG	1 cut(s)	355
Bsp143I	GATC	5 cut(s)	16, 71, 112, 229, 596
Bsp19I	CCATGG	2 cut(s)	150, 379
BspACI	CCGC	5 cut(s)	6, 608, 769, 801, 871
BspANI	GGCC	2 cut(s)	186, 378
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	3 cut(s)	4, 836, 943
BspPI	GGATC	3 cut(s)	79, 107, 224
BspQI	GCTCTTC	1 cut(s)	477
BspT107I	GGYRCC	1 cut(s)	941
BsrDI	GCAATG	2 cut(s)	211, 426
BsrI	ACTGG	5 cut(s)	116, 187, 401, 772, 823
BssECI	CCNNGG	4 cut(s)	150, 187, 246, 379
BssMI	GATC	5 cut(s)	16, 71, 112, 229, 596
BssNAI	GTATAC	1 cut(s)	663
BssT1I	CCWWGG	3 cut(s)	150, 246, 379
Bst1107I	GTATAC	1 cut(s)	663
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	6 cut(s)	264, 367, 667, 751, 790, 795
Bst6I	CTCTTC	3 cut(s)	477, 627, 646
BstC8I	GCNNGC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	63
BstDSI	CCRYGG	2 cut(s)	150, 379
BstENI	CCTNNNNNAGG	1 cut(s)	436
BstF5I	GGATG	4 cut(s)	73, 151, 197, 365
BstHHI	GCGC	2 cut(s)	57, 400
BstKTI	GATC	5 cut(s)	19, 74, 115, 232, 599
BstMBI	GATC	5 cut(s)	16, 71, 112, 229, 596
BstMWI	GCNNNNNNNGC	1 cut(s)	950
BstNI	CCWGG	1 cut(s)	605
BstNSI	RCATGY	2 cut(s)	904, 983
BstSCI	CCNGG	1 cut(s)	603
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	1 cut(s)	739
BstXI	CCANNNNNNTGG	1 cut(s)	505
BstZ17I	GTATAC	1 cut(s)	663
BsuRI	GGCC	2 cut(s)	186, 378
BtgI	CCRYGG	2 cut(s)	150, 379
BtsCI	GGATG	4 cut(s)	73, 151, 197, 365
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	3 cut(s)	180, 363, 804
Cac8I	GCNNGC	1 cut(s)	321
CaiI	CAGNNNCTG	1 cut(s)	778
CfoI	GCGC	2 cut(s)	57, 400
Cfr13I	GGNCC	2 cut(s)	2, 1010
Csp6I	GTAC	2 cut(s)	240, 791
CviQI	GTAC	2 cut(s)	240, 791
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	5 cut(s)	18, 73, 114, 231, 598
DpnII	GATC	5 cut(s)	16, 71, 112, 229, 596
DraI	TTTAAA	1 cut(s)	516
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	3 cut(s)	477, 627, 646
EarI	CTCTTC	3 cut(s)	477, 627, 646
EciI	GGCGGA	2 cut(s)	623, 860
Eco130I	CCWWGG	3 cut(s)	150, 246, 379
Eco47I	GGWCC	2 cut(s)	2, 1010
Eco57I	CTGAAG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	355
EcoNI	CCTNNNNNAGG	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	603
EcoT14I	CCWWGG	3 cut(s)	150, 246, 379
EcoT22I	ATGCAT	1 cut(s)	313
ErhI	CCWWGG	3 cut(s)	150, 246, 379
FauI	CCCGC	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	662
Fnu4HI	GCNGC	2 cut(s)	728, 802
FokI	GGATG	4 cut(s)	80, 158, 204, 372
Fsp4HI	GCNGC	2 cut(s)	728, 802
GlaI	GCGC	2 cut(s)	56, 399
GluI	GCNGC	2 cut(s)	728, 802
GsuI	CTGGAG	1 cut(s)	876
HaeIII	GGCC	2 cut(s)	186, 378
HapII	CCGG	1 cut(s)	1027
HhaI	GCGC	2 cut(s)	57, 400
Hin6I	GCGC	2 cut(s)	55, 398
HinP1I	GCGC	2 cut(s)	55, 398
HpaII	CCGG	1 cut(s)	1027
HphI	GGTGA	4 cut(s)	520, 683, 758, 1016
Hpy166II	GTNNAC	2 cut(s)	663, 1024
Hpy188I	TCNGA	5 cut(s)	191, 316, 526, 760, 1040
Hpy188III	TCNNGA	6 cut(s)	14, 357, 435, 626, 838, 893
Hpy8I	GTNNAC	2 cut(s)	663, 1024
HpyAV	CCTTC	4 cut(s)	203, 404, 432, 1023
HpyCH4III	ACNGT	6 cut(s)	264, 367, 667, 751, 790, 795
HpyCH4IV	ACGT	2 cut(s)	287, 349
HpyCH4V	TGCA	3 cut(s)	166, 311, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	950
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	2 cut(s)	287, 349
HspAI	GCGC	2 cut(s)	55, 398
Kzo9I	GATC	5 cut(s)	16, 71, 112, 229, 596
LguI	GCTCTTC	1 cut(s)	477
LmnI	GCTCC	1 cut(s)	724
Lsp1109I	GCAGC	1 cut(s)	739
LweI	GCATC	4 cut(s)	136, 175, 320, 350
MaeII	ACGT	2 cut(s)	287, 349
MaeIII	GTNAC	4 cut(s)	330, 471, 508, 982
MalI	GATC	5 cut(s)	18, 73, 114, 231, 598
MboI	GATC	5 cut(s)	16, 71, 112, 229, 596
MboII	GAAGA	7 cut(s)	110, 167, 397, 494, 614, 663, 839
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	8 cut(s)	36, 105, 405, 447, 717, 882, 910, 919
MluNI	TGGCCA	1 cut(s)	378
MmeI	TCCRAC	1 cut(s)	709
MnlI	CCTC	9 cut(s)	58, 197, 442, 446, 513, 667, 700, 900, 932
Mox20I	TGGCCA	1 cut(s)	378
Mph1103I	ATGCAT	1 cut(s)	313
MroXI	GAANNNNTTC	1 cut(s)	1034
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	6 cut(s)	135, 291, 515, 591, 881, 885
Msp20I	TGGCCA	1 cut(s)	378
MspI	CCGG	1 cut(s)	1027
MspR9I	CCNGG	1 cut(s)	605
MvaI	CCWGG	1 cut(s)	605
MwoI	GCNNNNNNNGC	1 cut(s)	950
NcoI	CCATGG	2 cut(s)	150, 379
NdeII	GATC	5 cut(s)	16, 71, 112, 229, 596
NlaIV	GGNNCC	3 cut(s)	4, 836, 943
NmuCI	GTSAC	2 cut(s)	330, 508
NsiI	ATGCAT	1 cut(s)	313
NspI	RCATGY	2 cut(s)	904, 983
PacI	TTAATTAA	1 cut(s)	885
PciSI	GCTCTTC	1 cut(s)	477
PdmI	GAANNNNTTC	1 cut(s)	1034
PflMI	CCANNNNNTGG	1 cut(s)	778
PkrI	GCNGC	2 cut(s)	729, 803
Psp1406I	AACGTT	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	603
PspGI	CCWGG	1 cut(s)	603
PspN4I	GGNNCC	3 cut(s)	4, 836, 943
PspPI	GGNCC	2 cut(s)	2, 1010
PstNI	CAGNNNCTG	1 cut(s)	778
RsaI	GTAC	2 cut(s)	241, 792
RsaNI	GTAC	2 cut(s)	240, 791
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	6 cut(s)	135, 291, 515, 591, 881, 885
SatI	GCNGC	2 cut(s)	728, 802
Sau3AI	GATC	5 cut(s)	16, 71, 112, 229, 596
Sau96I	GGNCC	2 cut(s)	2, 1010
ScrFI	CCNGG	1 cut(s)	605
SfaNI	GCATC	4 cut(s)	136, 175, 320, 350
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	2 cut(s)	2, 1010
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
Sse9I	AATT	8 cut(s)	36, 105, 405, 447, 717, 882, 910, 919
SsiI	CCGC	5 cut(s)	6, 608, 769, 801, 871
SspI	AATATT	2 cut(s)	551, 696
StyD4I	CCNGG	1 cut(s)	603
StyI	CCWWGG	3 cut(s)	150, 246, 379
TaaI	ACNGT	6 cut(s)	264, 367, 667, 751, 790, 795
TaiI	ACGT	2 cut(s)	290, 352
TaqI	TCGA	1 cut(s)	369
TasI	AATT	8 cut(s)	36, 105, 405, 447, 717, 882, 910, 919
TatI	WGTACW	2 cut(s)	239, 790
TauI	GCSGC	1 cut(s)	804
Tru1I	TTAA	6 cut(s)	135, 291, 515, 591, 881, 885
Tru9I	TTAA	6 cut(s)	135, 291, 515, 591, 881, 885
TscAI	CASTG	3 cut(s)	187, 370, 811
TseFI	GTSAC	2 cut(s)	330, 508
TseI	GCWGC	1 cut(s)	727
Tsp45I	GTSAC	2 cut(s)	330, 508
TspDTI	ATGAA	8 cut(s)	65, 78, 92, 222, 543, 585, 597, 1017
TspRI	CASTG	3 cut(s)	187, 370, 811
Van91I	CCANNNNNTGG	1 cut(s)	778
VpaK11BI	GGWCC	2 cut(s)	2, 1010
XagI	CCTNNNNNAGG	1 cut(s)	436
XapI	RAATTY	1 cut(s)	910
XceI	RCATGY	2 cut(s)	904, 983
XcmI	CCANNNNNNNNNTGG	1 cut(s)	845
XmiI	GTMKAC	1 cut(s)	662
XmnI	GAANNNNTTC	1 cut(s)	1034
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.