Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007988

Physical Location & Seq

Genomic Coordinates Reverse (-)

1328728 .. 1335045

Gene Structure 6318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G014900.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAGGCTGCGGTGGTCGACCCCGGCTCGAAGCTCCTCAAAGCAGGACCTGCTATTCCCGATCAAGCTCCTTCCATGATAATTCCTAACCAAATGAAGCGCATGCTTGATGATGGATCAATTAATGATAATTCATCATCTGAAGATACCATTGTTGATCCAGTTGTGCGAGGTCTTATTAGAGATTGGGATGCCATGGAAGATCTGTTGCATCATGTTCTATATACTGGCCTTGGATGGGAAATGGGCAACGAAGGGCAGATATTATTTACTGATCCACTATGTACCCCCAAGGCTGTTAGAGAGCAGTTGGTGCAACTGATGTTTGAAACGTTTAACATTTCGGGCTTCTATGCATCAGAGCAAGCAGTATTGTCACTTTATGCTGTAGGGCGTATCTCAGGATGCACTGTTGATATTGGCCATGGAAAGATAGATATTGCACCAGTAATTGAAGGTGCTGTTCAGCACATTGCCTCAAGAAGGTTTGAAATTGGAGGTATGGATTTGACGAAGTTACTTGCTGAAGAGCTTGGGAAATCCAATCCTTTGGTGAATATCAAGATGTCTGATATTGAGAAAATAAAAGAGCAATATTCATGTTGTGCTGAAGATGAACTTGCTTATGAAAAGACCAAAAATGCATGCCAGACAGAGCAACATACTCTTCCTGATGGACAGGTCATTACGATTGGAAGAGAAAAATATACTGTTGGTGAGGCTTTATTCCAACCATCTATATTGGGGTTAGAGGCTCATGGGATTGTTGAGCAGCTTGTTCGTTGTATTTCAACAGTGTCGTCTGATAATCACCGTCAATTGCTGGAAAATACTGTACTGTGTGGTGGCACTGCTTCTATGACTGGTTTTGAAGAAAGGTTTCAGAAAGAAGCTGGACTATGCTCATCTGCTGTCCGTCCTGCTTTAATTAAGCCTCCAGAATATATGCCGGAGAATTTGTCAATGTATTCAGCATGGGTGGGAGGTGCCATACTAGCCAAAGTTGTGTTCCCACAAAATCAGCATGTAACCAAAGCAGACTATGATGAAACTGGACCTTCCGTTGTTCATCGGAAATGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010154 GO:0010227 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

362

Amino Acids

39.54

Weight (kDa)

4.92

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60830
fragaria_vesca	FvH4_7g01150 FvH4_7g01150 FvH4_7g01150 FvH4_7g01150
malus_domestica	MD02G1309300.v1.1 MD07G1012400.v1.1
prunus_persica	Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1
pyrus_communis	pycom07g01000
rosa_chinensis	RchiOBHm_Chr1g0316421
rosa_laevigata	RLG00000030675
rosa_multiflora	Rmu_sc0007485.1_g000001 Rmu_sc0008729.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331030
rosa_rugosa	Rorug01G0010300 Rorug01G0010400
rosa_samantha	Rh1AG020200 Rh1BG015400 Rh1DG015400
rosa_wichuraiana	Rw0G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	58
AccB1I	GGYRCC	1 cut(s)	986
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	1 cut(s)	11
AclI	AACGTT	1 cut(s)	332
AclWI	GGATC	3 cut(s)	124, 152, 269
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	955
AcuI	CTGAAG	3 cut(s)	162, 546, 630
AfaI	GTAC	2 cut(s)	286, 837
AfiI	CCNNNNNNNGG	2 cut(s)	238, 483
AgsI	TTSAA	5 cut(s)	329, 455, 491, 792, 872
AjuI	GAANNNNNNNTTGG	2 cut(s)	992, 1024
AluBI	AGCT	5 cut(s)	34, 68, 532, 775, 893
AluI	AGCT	5 cut(s)	34, 68, 532, 775, 893
AlwI	GGATC	3 cut(s)	124, 152, 269
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	2 cut(s)	229, 421
ApeKI	GCWGC	2 cut(s)	8, 772
ApoI	RAATTY	1 cut(s)	955
AseI	ATTAAT	1 cut(s)	123
Asp700I	GAANNNNTTC	2 cut(s)	879, 1079
AspLEI	GCGC	1 cut(s)	102
AspS9I	GGNCC	2 cut(s)	47, 1055
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	3 cut(s)	565, 728, 803
AvaII	GGWCC	2 cut(s)	47, 1055
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BalI	TGGCCA	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	986
BbvI	GCAGC	1 cut(s)	784
BccI	CCATC	4 cut(s)	107, 231, 668, 742
BcgI	CGANNNNNNTGC	2 cut(s)	761, 795
BcnI	CCSGG	1 cut(s)	24
BfaI	CTAG	1 cut(s)	995
BfmI	CTRYAG	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	58
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	2 cut(s)	9, 773
BlsI	GCNGC	2 cut(s)	10, 774
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	2 cut(s)	47, 1055
BmgT120I	GGNCC	2 cut(s)	47, 1055
BmiI	GGNNCC	1 cut(s)	988
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	4 cut(s)	181, 220, 365, 395
BpmI	CTGGAG	1 cut(s)	921
BpuEI	CTTGAG	1 cut(s)	463
BpuMI	CCSGG	1 cut(s)	24
BsaJI	CCNNGG	5 cut(s)	22, 195, 232, 291, 424
BsaXI	ACNNNNNCTCC	2 cut(s)	944, 974
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 483
Bse1I	ACTGG	5 cut(s)	161, 232, 446, 868, 1057
Bse3DI	GCAATG	1 cut(s)	471
BseDI	CCNNGG	5 cut(s)	22, 195, 232, 291, 424
BseGI	GGATG	3 cut(s)	196, 242, 410
BseLI	CCNNNNNNNGG	2 cut(s)	238, 483
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	5 cut(s)	161, 232, 446, 868, 1057
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	784
BshFI	GGCC	2 cut(s)	231, 423
BshNI	GGYRCC	1 cut(s)	986
BsiSI	CCGG	2 cut(s)	24, 950
BslI	CCNNNNNNNGG	2 cut(s)	238, 483
BsnI	GGCC	2 cut(s)	231, 423
Bsp143I	GATC	5 cut(s)	61, 116, 157, 202, 274
Bsp19I	CCATGG	2 cut(s)	195, 424
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	2 cut(s)	231, 423
BspCNI	CTCAG	1 cut(s)	413
BspLI	GGNNCC	1 cut(s)	988
BspMI	ACCTGC	1 cut(s)	58
BspPI	GGATC	3 cut(s)	124, 152, 269
BspQI	GCTCTTC	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	986
BsrDI	GCAATG	1 cut(s)	471
BsrI	ACTGG	5 cut(s)	161, 232, 446, 868, 1057
BssECI	CCNNGG	5 cut(s)	22, 195, 232, 291, 424
BssMI	GATC	5 cut(s)	61, 116, 157, 202, 274
BssT1I	CCWWGG	4 cut(s)	195, 232, 291, 424
Bst4CI	ACNGT	6 cut(s)	412, 712, 796, 815, 835, 840
Bst6I	CTCTTC	3 cut(s)	522, 672, 691
BstAPI	GCANNNNNTGC	2 cut(s)	50, 313
BstC8I	GCNNGC	3 cut(s)	104, 366, 646
BstDEI	CTNAG	1 cut(s)	400
BstDSI	CCRYGG	2 cut(s)	195, 424
BstENI	CCTNNNNNAGG	1 cut(s)	481
BstF5I	GGATG	3 cut(s)	196, 242, 410
BstHHI	GCGC	1 cut(s)	102
BstKTI	GATC	5 cut(s)	64, 119, 160, 205, 277
BstMBI	GATC	5 cut(s)	61, 116, 157, 202, 274
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 313, 995
BstNSI	RCATGY	3 cut(s)	106, 648, 1028
BstSCI	CCNGG	1 cut(s)	22
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	784
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	231, 423
BtgI	CCRYGG	2 cut(s)	195, 424
BtsCI	GGATG	3 cut(s)	196, 242, 410
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	3 cut(s)	408, 801, 849
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	3 cut(s)	104, 366, 646
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	1 cut(s)	102
Cfr13I	GGNCC	2 cut(s)	47, 1055
Csp6I	GTAC	2 cut(s)	285, 836
CviQI	GTAC	2 cut(s)	285, 836
DdeI	CTNAG	1 cut(s)	400
DpnI	GATC	5 cut(s)	63, 118, 159, 204, 276
DpnII	GATC	5 cut(s)	61, 116, 157, 202, 274
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	3 cut(s)	522, 672, 691
EarI	CTCTTC	3 cut(s)	522, 672, 691
Eco130I	CCWWGG	4 cut(s)	195, 232, 291, 424
Eco47I	GGWCC	2 cut(s)	47, 1055
Eco57I	CTGAAG	3 cut(s)	162, 546, 630
EcoNI	CCTNNNNNAGG	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	47
EcoT14I	CCWWGG	4 cut(s)	195, 232, 291, 424
EcoT22I	ATGCAT	2 cut(s)	358, 646
ErhI	CCWWGG	4 cut(s)	195, 232, 291, 424
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	9, 773
FokI	GGATG	3 cut(s)	203, 249, 417
Fsp4HI	GCNGC	2 cut(s)	9, 773
FspBI	CTAG	1 cut(s)	995
GlaI	GCGC	1 cut(s)	101
GluI	GCNGC	2 cut(s)	9, 773
GsuI	CTGGAG	1 cut(s)	921
HaeIII	GGCC	2 cut(s)	231, 423
HapII	CCGG	2 cut(s)	24, 950
HhaI	GCGC	1 cut(s)	102
Hin6I	GCGC	1 cut(s)	100
HinP1I	GCGC	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HpaII	CCGG	2 cut(s)	24, 950
HphI	GGTGA	3 cut(s)	565, 728, 803
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	7 cut(s)	142, 361, 571, 805, 885, 1074, 1085
Hpy188III	TCNNGA	6 cut(s)	59, 402, 480, 562, 671, 938
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	5 cut(s)	81, 248, 449, 477, 1068
HpyCH4III	ACNGT	6 cut(s)	412, 712, 796, 815, 835, 840
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	6 cut(s)	211, 316, 356, 408, 443, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 313, 995
HpyF3I	CTNAG	1 cut(s)	400
HpySE526I	ACGT	1 cut(s)	332
HspAI	GCGC	1 cut(s)	100
Kzo9I	GATC	5 cut(s)	61, 116, 157, 202, 274
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	2 cut(s)	39, 73
Lsp1109I	GCAGC	1 cut(s)	784
LweI	GCATC	4 cut(s)	181, 220, 365, 395
MaeI	CTAG	1 cut(s)	995
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	3 cut(s)	375, 516, 1027
MalI	GATC	5 cut(s)	63, 118, 159, 204, 276
MboI	GATC	5 cut(s)	61, 116, 157, 202, 274
MboII	GAAGA	7 cut(s)	155, 212, 539, 623, 659, 708, 884
MfeI	CAATTG	1 cut(s)	818
MflI	RGATCY	1 cut(s)	202
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	8 cut(s)	81, 120, 130, 450, 492, 818, 927, 955
MluNI	TGGCCA	1 cut(s)	423
MmeI	TCCRAC	1 cut(s)	754
MnlI	CCTC	8 cut(s)	47, 164, 487, 491, 712, 745, 945, 977
Mox20I	TGGCCA	1 cut(s)	423
Mph1103I	ATGCAT	2 cut(s)	358, 646
MroXI	GAANNNNTTC	2 cut(s)	879, 1079
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	4 cut(s)	123, 336, 926, 930
Msp20I	TGGCCA	1 cut(s)	423
MspI	CCGG	2 cut(s)	24, 950
MspR9I	CCNGG	1 cut(s)	24
MunI	CAATTG	1 cut(s)	818
MwoI	GCNNNNNNNGC	3 cut(s)	50, 313, 995
NciI	CCSGG	1 cut(s)	24
NcoI	CCATGG	2 cut(s)	195, 424
NdeII	GATC	5 cut(s)	61, 116, 157, 202, 274
NlaIV	GGNNCC	1 cut(s)	988
NmuCI	GTSAC	1 cut(s)	375
NsiI	ATGCAT	2 cut(s)	358, 646
NspI	RCATGY	3 cut(s)	106, 648, 1028
PacI	TTAATTAA	1 cut(s)	930
PaeI	GCATGC	2 cut(s)	106, 648
PciSI	GCTCTTC	1 cut(s)	522
PdmI	GAANNNNTTC	2 cut(s)	879, 1079
PkrI	GCNGC	2 cut(s)	10, 774
PpuMI	RGGWCCY	1 cut(s)	47
PshBI	ATTAAT	1 cut(s)	123
Psp1406I	AACGTT	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	988
PspPI	GGNCC	2 cut(s)	47, 1055
PspPPI	RGGWCCY	1 cut(s)	47
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	2 cut(s)	286, 837
RsaNI	GTAC	2 cut(s)	285, 836
SalI	GTCGAC	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	4 cut(s)	123, 336, 926, 930
SatI	GCNGC	2 cut(s)	9, 773
Sau3AI	GATC	5 cut(s)	61, 116, 157, 202, 274
Sau96I	GGNCC	2 cut(s)	47, 1055
ScrFI	CCNGG	1 cut(s)	24
SfaNI	GCATC	4 cut(s)	181, 220, 365, 395
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	2 cut(s)	47, 1055
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
SphI	GCATGC	2 cut(s)	106, 648
Sse9I	AATT	8 cut(s)	81, 120, 130, 450, 492, 818, 927, 955
SsiI	CCGC	1 cut(s)	11
SspI	AATATT	1 cut(s)	596
SspMI	CTAG	1 cut(s)	995
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	4 cut(s)	195, 232, 291, 424
TaaI	ACNGT	6 cut(s)	412, 712, 796, 815, 835, 840
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	2 cut(s)	18, 29
TasI	AATT	8 cut(s)	81, 120, 130, 450, 492, 818, 927, 955
TatI	WGTACW	1 cut(s)	835
Tru1I	TTAA	4 cut(s)	123, 336, 926, 930
Tru9I	TTAA	4 cut(s)	123, 336, 926, 930
TscAI	CASTG	3 cut(s)	415, 801, 856
TseFI	GTSAC	1 cut(s)	375
TseI	GCWGC	2 cut(s)	8, 772
Tsp45I	GTSAC	1 cut(s)	375
TspDTI	ATGAA	7 cut(s)	110, 123, 588, 630, 642, 1058, 1062
TspGWI	ACGGA	2 cut(s)	905, 1051
TspRI	CASTG	3 cut(s)	415, 801, 856
VpaK11BI	GGWCC	2 cut(s)	47, 1055
VspI	ATTAAT	1 cut(s)	123
XagI	CCTNNNNNAGG	1 cut(s)	481
XapI	RAATTY	1 cut(s)	955
XceI	RCATGY	3 cut(s)	106, 648, 1028
XmiI	GTMKAC	1 cut(s)	18
XmnI	GAANNNNTTC	2 cut(s)	879, 1079
XspI	CTAG	1 cut(s)	995
Zsp2I	ATGCAT	2 cut(s)	358, 646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.