Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007988

Physical Location & Seq

Genomic Coordinates Forward (+)

64817427 .. 64823210

Gene Structure 5784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00331030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGGCCGCCGTGGTCGATGCTGGCTCCAAGCTCCTCAAAGCGGGTCCCGCCGTTCCCGATCAAGCTCCCGCCATGATTATTCCAAACCAAATGAAACGCATGCCTGAGGAGGGATCAATGACTGATGGTTCAATATTTGAAGATACAATTGTTGATCCTGTTGTCCGAGGTTTTATTAAAGATTGGGATGCCATGGAAGATCTGTTGCATCATATTCTATACACTGGTCTCGGATGGGAAATGGGCAATGAAGGGCAGATATTATTTACTGATCCACTTTGTACTCCCAAGGCTGTCAGAGAACAGTTGGTACAACTGATGTTTGAAACGTTTAACATATCGGGCTTCTATGCATCAGAGCAAGCAGTATTGTCACTTTATGCTGTAGGACGTATCTCAGGATGCACTGTTGATATTGGGCATGGGAAGATTGATATTGCACCAGTAATTGAAGGCGCGGTTCAGCACATTGCCTCAAGAAGGTTTGAAATTGGAGGTATTGATTTGACGAAGTTACTTGCCGAAGAGCTTGGGAAATCCAATCCTCTGGTGAATCTCAAGATGTCTGATGTTGAGAAAATAAAAGAGCAATATTCATGTTGTGCTGCTGATGAACTTGCTTATGAAAAGATTAAAAGATCATGCCAGACGGAACAACATACCCTTCCTGATGGACAGGTCATTACAATTGGAAGGGAAAGGTATACTGTTGGTGAGGCTTTATTCCAACCATCTATACTGGGTTTAGAGGCTCATGGAATTGTTGAGCAGCTTGTTCGTTGTATTTCAACAGTATCCTCGGATAATCACCGGCAATTGCTGGAAAATACGGTACTGTGCGGTGGCACTGCTTCTATGACTGTTGGATTGCTTCTTACTGCAGGTTTTGAAGAAAGGTTCCAGAAAGAAGCTGGTCTATGCTCATCTGCTGTCCGCCCTGCTTTAATTAAGCCTCCAGAGTACATGCCAGAGAACTTGACAAACTATTCAGCATGGGTGGGGGTGCCATACTTGCCAAAGTTGTATTTCCACAGAATCAGCATGTTACCAAAGCAGACTATGATGAAAATGGCCCTTCAGTTGTTCATCGGAAATGCTTCTAATCATTTCTGTATTGAGTTCCTGAAGCCTAGTGTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010154 GO:0010227 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

381

Amino Acids

41.95

Weight (kDa)

5.22

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	2 - 181	1.4e-34	Actin
Actin	PF00022	192 - 339	6.3e-18	Actin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60830
fragaria_vesca	FvH4_7g01150 FvH4_7g01150 FvH4_7g01150 FvH4_7g01150
malus_domestica	MD02G1309300.v1.1 MD07G1012400.v1.1
prunus_persica	Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1
pyrus_communis	pycom07g01000
rosa_chinensis	RchiOBHm_Chr1g0316421
rosa_laevigata	RLG00000030675
rosa_multiflora	Rmu_sc0007485.1_g000001 Rmu_sc0008729.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331030
rosa_rugosa	Rorug01G0010300 Rorug01G0010400
rosa_samantha	Rh1AG020200 Rh1BG015400 Rh1DG015400
rosa_wichuraiana	Rw0G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	875
AccB1I	GGYRCC	1 cut(s)	1006
AccI	GTMKAC	1 cut(s)	707
AccII	CGCG	1 cut(s)	461
AciI	CCGC	7 cut(s)	9, 44, 51, 72, 461, 843, 937
AclI	AACGTT	1 cut(s)	332
AclWI	GGATC	3 cut(s)	124, 152, 269
AcuI	CTGAAG	1 cut(s)	1064
AfaI	GTAC	4 cut(s)	286, 315, 837, 965
AfiI	CCNNNNNNNGG	3 cut(s)	43, 113, 483
AgsI	TTSAA	7 cut(s)	135, 143, 329, 455, 491, 792, 893
AluBI	AGCT	5 cut(s)	34, 68, 532, 775, 914
AluI	AGCT	5 cut(s)	34, 68, 532, 775, 914
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	3 cut(s)	124, 152, 269
AoxI	GGCC	2 cut(s)	6, 1074
ApeKI	GCWGC	2 cut(s)	608, 772
Asp700I	GAANNNNTTC	1 cut(s)	1099
AspLEI	GCGC	1 cut(s)	461
AspS9I	GGNCC	2 cut(s)	47, 1075
AsuHPI	GGTGA	3 cut(s)	565, 728, 803
AvaII	GGWCC	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	108
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BanI	GGYRCC	1 cut(s)	1006
BbvI	GCAGC	2 cut(s)	595, 784
BccI	CCATC	4 cut(s)	122, 231, 668, 742
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	761, 795
BciVI	GTATCC	1 cut(s)	808
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	1 cut(s)	1134
BfmI	CTRYAG	2 cut(s)	387, 882
BfuAI	ACCTGC	1 cut(s)	875
BfuI	GTATCC	1 cut(s)	808
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	3 cut(s)	9, 609, 773
BlsI	GCNGC	3 cut(s)	10, 610, 774
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	47, 1075
BmiI	GGNNCC	5 cut(s)	28, 48, 49, 902, 1008
BmrI	ACTGGG	1 cut(s)	752
BmsI	GCATC	5 cut(s)	10, 181, 220, 365, 395
BmuI	ACTGGG	1 cut(s)	752
BpmI	CTGGAG	1 cut(s)	942
BpuEI	CTTGAG	2 cut(s)	463, 545
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	5 cut(s)	12, 169, 195, 291, 801
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 113, 483
Bse118I	RCCGGY	1 cut(s)	813
Bse1I	ACTGG	3 cut(s)	232, 446, 747
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	2 cut(s)	256, 471
BseDI	CCNNGG	5 cut(s)	12, 169, 195, 291, 801
BseGI	GGATG	3 cut(s)	196, 242, 410
BseLI	CCNNNNNNNGG	3 cut(s)	43, 113, 483
BseMI	GCAATG	2 cut(s)	256, 471
BseMII	CTCAG	2 cut(s)	99, 414
BseNI	ACTGG	3 cut(s)	232, 446, 747
BseRI	GAGGAG	2 cut(s)	26, 125
BseXI	GCAGC	2 cut(s)	595, 784
Bsh1236I	CGCG	1 cut(s)	461
BshFI	GGCC	2 cut(s)	8, 1076
BshNI	GGYRCC	1 cut(s)	1006
BsiSI	CCGG	1 cut(s)	814
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	3 cut(s)	43, 113, 483
BsmAI	GTCTC	1 cut(s)	236
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	8, 1076
Bso31I	GGTCTC	1 cut(s)	236
Bsp143I	GATC	6 cut(s)	61, 116, 157, 202, 274, 641
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	7 cut(s)	9, 44, 51, 72, 461, 843, 937
BspANI	GGCC	2 cut(s)	8, 1076
BspCNI	CTCAG	2 cut(s)	100, 413
BspFNI	CGCG	1 cut(s)	461
BspLI	GGNNCC	5 cut(s)	28, 48, 49, 902, 1008
BspMAI	CTGCAG	1 cut(s)	886
BspMI	ACCTGC	1 cut(s)	875
BspPI	GGATC	3 cut(s)	124, 152, 269
BspQI	GCTCTTC	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	1006
BspTNI	GGTCTC	1 cut(s)	236
BsrDI	GCAATG	2 cut(s)	256, 471
BsrFI	RCCGGY	1 cut(s)	813
BsrI	ACTGG	3 cut(s)	232, 446, 747
BssAI	RCCGGY	1 cut(s)	813
BssECI	CCNNGG	5 cut(s)	12, 169, 195, 291, 801
BssMI	GATC	6 cut(s)	61, 116, 157, 202, 274, 641
BssNAI	GTATAC	1 cut(s)	708
BssT1I	CCWWGG	2 cut(s)	195, 291
Bst1107I	GTATAC	1 cut(s)	708
Bst4CI	ACNGT	7 cut(s)	309, 412, 712, 796, 835, 840, 865
Bst6I	CTCTTC	1 cut(s)	522
BstC8I	GCNNGC	3 cut(s)	25, 104, 366
BstDEI	CTNAG	2 cut(s)	108, 400
BstDSI	CCRYGG	2 cut(s)	12, 195
BstENI	CCTNNNNNAGG	1 cut(s)	481
BstF5I	GGATG	3 cut(s)	196, 242, 410
BstFNI	CGCG	1 cut(s)	461
BstHHI	GCGC	1 cut(s)	461
BstKTI	GATC	6 cut(s)	64, 119, 160, 205, 277, 644
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	6 cut(s)	61, 116, 157, 202, 274, 641
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 1015
BstNSI	RCATGY	3 cut(s)	106, 970, 1048
BstSFI	CTRYAG	2 cut(s)	387, 882
BstUI	CGCG	1 cut(s)	461
BstV1I	GCAGC	2 cut(s)	595, 784
BstX2I	RGATCY	1 cut(s)	202
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	202
BstZ17I	GTATAC	1 cut(s)	708
Bsu36I	CCTNAGG	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	808
BsuRI	GGCC	2 cut(s)	8, 1076
BtgI	CCRYGG	2 cut(s)	12, 195
BtsCI	GGATG	3 cut(s)	196, 242, 410
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	3 cut(s)	225, 408, 849
BveI	ACCTGC	1 cut(s)	875
Cac8I	GCNNGC	3 cut(s)	25, 104, 366
CfoI	GCGC	1 cut(s)	461
Cfr10I	RCCGGY	1 cut(s)	813
Cfr13I	GGNCC	2 cut(s)	47, 1075
Csp6I	GTAC	4 cut(s)	285, 314, 836, 964
CviQI	GTAC	4 cut(s)	285, 314, 836, 964
DdeI	CTNAG	2 cut(s)	108, 400
DpnI	GATC	6 cut(s)	63, 118, 159, 204, 276, 643
DpnII	GATC	6 cut(s)	61, 116, 157, 202, 274, 641
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
EciI	GGCGGA	1 cut(s)	926
Eco130I	CCWWGG	2 cut(s)	195, 291
Eco31I	GGTCTC	1 cut(s)	236
Eco47I	GGWCC	1 cut(s)	47
Eco57I	CTGAAG	1 cut(s)	1064
Eco81I	CCTNAGG	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	47
EcoT14I	CCWWGG	2 cut(s)	195, 291
EcoT22I	ATGCAT	1 cut(s)	358
ErhI	CCWWGG	2 cut(s)	195, 291
FaqI	GGGAC	1 cut(s)	33
FauI	CCCGC	3 cut(s)	37, 58, 79
FblI	GTMKAC	1 cut(s)	707
Fnu4HI	GCNGC	3 cut(s)	9, 609, 773
FokI	GGATG	3 cut(s)	203, 249, 417
Fsp4HI	GCNGC	3 cut(s)	9, 609, 773
FspBI	CTAG	1 cut(s)	1134
GlaI	GCGC	1 cut(s)	460
GluI	GCNGC	3 cut(s)	9, 609, 773
GsuI	CTGGAG	1 cut(s)	942
HaeIII	GGCC	2 cut(s)	8, 1076
HapII	CCGG	1 cut(s)	814
HhaI	GCGC	1 cut(s)	461
Hin6I	GCGC	1 cut(s)	459
HinP1I	GCGC	1 cut(s)	459
HinfI	GANTC	2 cut(s)	556, 1038
HpaII	CCGG	1 cut(s)	814
HphI	GGTGA	3 cut(s)	565, 728, 803
Hpy166II	GTNNAC	1 cut(s)	708
Hpy188I	TCNGA	7 cut(s)	170, 236, 302, 361, 571, 805, 1094
Hpy188III	TCNNGA	8 cut(s)	59, 402, 480, 562, 671, 904, 959, 1126
Hpy8I	GTNNAC	1 cut(s)	708
HpyAV	CCTTC	6 cut(s)	248, 449, 477, 677, 690, 1088
HpyCH4III	ACNGT	7 cut(s)	309, 412, 712, 796, 835, 840, 865
HpyCH4IV	ACGT	2 cut(s)	332, 394
HpyCH4V	TGCA	5 cut(s)	211, 356, 408, 443, 884
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 1015
HpyF3I	CTNAG	2 cut(s)	108, 400
HpySE526I	ACGT	2 cut(s)	332, 394
HspAI	GCGC	1 cut(s)	459
KflI	GGGWCCC	1 cut(s)	47
Kzo9I	GATC	6 cut(s)	61, 116, 157, 202, 274, 641
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	3 cut(s)	32, 39, 73
Lsp1109I	GCAGC	2 cut(s)	595, 784
LweI	GCATC	5 cut(s)	10, 181, 220, 365, 395
MaeI	CTAG	1 cut(s)	1134
MaeII	ACGT	2 cut(s)	332, 394
MaeIII	GTNAC	3 cut(s)	375, 516, 1047
MalI	GATC	6 cut(s)	63, 118, 159, 204, 276, 643
MboI	GATC	6 cut(s)	61, 116, 157, 202, 274, 641
MboII	GAAGA	5 cut(s)	155, 212, 442, 539, 905
MfeI	CAATTG	3 cut(s)	150, 690, 818
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	7 cut(s)	150, 450, 492, 690, 762, 818, 948
MmeI	TCCRAC	2 cut(s)	754, 847
Mph1103I	ATGCAT	1 cut(s)	358
MroXI	GAANNNNTTC	1 cut(s)	1099
MseI	TTAA	6 cut(s)	180, 336, 636, 947, 951, 1144
MspI	CCGG	1 cut(s)	814
MunI	CAATTG	3 cut(s)	150, 690, 818
MvnI	CGCG	1 cut(s)	461
MwoI	GCNNNNNNNGC	2 cut(s)	50, 1015
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	6 cut(s)	61, 116, 157, 202, 274, 641
NlaIV	GGNNCC	5 cut(s)	28, 48, 49, 902, 1008
NmuCI	GTSAC	1 cut(s)	375
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	3 cut(s)	106, 970, 1048
PacI	TTAATTAA	1 cut(s)	951
PaeI	GCATGC	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	522
PdmI	GAANNNNTTC	1 cut(s)	1099
PfeI	GAWTC	2 cut(s)	556, 1038
PkrI	GCNGC	3 cut(s)	10, 610, 774
PpuMI	RGGWCCY	1 cut(s)	47
Psp1406I	AACGTT	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	47
PspN4I	GGNNCC	5 cut(s)	28, 48, 49, 902, 1008
PspPI	GGNCC	2 cut(s)	47, 1075
PspPPI	RGGWCCY	1 cut(s)	47
PsrI	GAACNNNNNNTAC	2 cut(s)	297, 329
PstI	CTGCAG	1 cut(s)	886
PsuI	RGATCY	1 cut(s)	202
RsaI	GTAC	4 cut(s)	286, 315, 837, 965
RsaNI	GTAC	4 cut(s)	285, 314, 836, 964
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	6 cut(s)	180, 336, 636, 947, 951, 1144
SatI	GCNGC	3 cut(s)	9, 609, 773
Sau3AI	GATC	6 cut(s)	61, 116, 157, 202, 274, 641
Sau96I	GGNCC	2 cut(s)	47, 1075
SfaNI	GCATC	5 cut(s)	10, 181, 220, 365, 395
SfcI	CTRYAG	2 cut(s)	387, 882
SinI	GGWCC	1 cut(s)	47
SmlI	CTYRAG	2 cut(s)	478, 560
SmoI	CTYRAG	2 cut(s)	478, 560
SphI	GCATGC	1 cut(s)	106
Sse9I	AATT	7 cut(s)	150, 450, 492, 690, 762, 818, 948
SsiI	CCGC	7 cut(s)	9, 44, 51, 72, 461, 843, 937
SspI	AATATT	2 cut(s)	138, 596
SspMI	CTAG	1 cut(s)	1134
StyI	CCWWGG	2 cut(s)	195, 291
TaaI	ACNGT	7 cut(s)	309, 412, 712, 796, 835, 840, 865
TaiI	ACGT	2 cut(s)	335, 397
TaqI	TCGA	1 cut(s)	18
TasI	AATT	7 cut(s)	150, 450, 492, 690, 762, 818, 948
TatI	WGTACW	2 cut(s)	284, 963
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	556, 1038
Tru1I	TTAA	6 cut(s)	180, 336, 636, 947, 951, 1144
Tru9I	TTAA	6 cut(s)	180, 336, 636, 947, 951, 1144
TscAI	CASTG	3 cut(s)	232, 415, 856
TseFI	GTSAC	1 cut(s)	375
TseI	GCWGC	2 cut(s)	608, 772
Tsp45I	GTSAC	1 cut(s)	375
TspDTI	ATGAA	7 cut(s)	110, 267, 588, 630, 642, 1078, 1082
TspGWI	ACGGA	1 cut(s)	668
TspRI	CASTG	3 cut(s)	232, 415, 856
VpaK11BI	GGWCC	1 cut(s)	47
XagI	CCTNNNNNAGG	1 cut(s)	481
XceI	RCATGY	3 cut(s)	106, 970, 1048
XcmI	CCANNNNNNNNNTGG	1 cut(s)	911
XmiI	GTMKAC	1 cut(s)	707
XmnI	GAANNNNTTC	1 cut(s)	1099
XspI	CTAG	1 cut(s)	1134
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.