Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007988

Physical Location & Seq

Genomic Coordinates Forward (+)

1806424 .. 1809805

Gene Structure 3382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0010300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCTCTGGCTTGTTGGTTTTGTAAAGCTGTTGTCTATTTTCTGTATCAGCAATCCTTAGTAGCTCAAACTTCCATTGAAAAAAAGTGGGTTGATTGCTTGGGAAATGTACATGGTCGAGTTGAGGGTACAAATGCTAGTGCTGAGGTTCTAATACTTGGTTCTGATTTGGATACTGTTGTTGATGCCGGGATATTTGATGGGTCTTTACTCTTTAGGCATCATTTCTGTGGTATCTGCATTGAAGGAGCTTTGGGGAAGTTATTCAACTTATTTTACAAGGCAGAATCATCAAACTCCCAAAATAAAAATAGCAGTAATGAATCCAGAGGAACTAAAGAGGAAACGAGGTCTCTAGAAGGGTTCTACGAAGAACTCCGAATCGCAAAAAAAATTGCTGTAGTGAATTCAGTAACTGTTTCTGTCAGGAAGTGCCCTGAGACAGCTAAGAATCTTCTATATTTGGAAACAGATTTACGAGTCATTTACCTGATCATGTTGTTGTTGTTCACTGGGGAGTTTGCAAAGATGGGAAATTCCAGCAGCCCCACATCCGCCAGAAACAGTAGTTTTCAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010154 GO:0010227 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

193

Amino Acids

21.33

Weight (kDa)

6.82

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60830
fragaria_vesca	FvH4_7g01150 FvH4_7g01150 FvH4_7g01150 FvH4_7g01150
malus_domestica	MD02G1309300.v1.1 MD07G1012400.v1.1
prunus_persica	Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1
pyrus_communis	pycom07g01000
rosa_chinensis	RchiOBHm_Chr1g0316421
rosa_laevigata	RLG00000030675
rosa_multiflora	Rmu_sc0007485.1_g000001 Rmu_sc0008729.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331030
rosa_rugosa	Rorug01G0010300 Rorug01G0010400
rosa_samantha	Rh1AG020200 Rh1BG015400 Rh1DG015400
rosa_wichuraiana	Rw0G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	555
AcsI	RAATTY	2 cut(s)	406, 535
AfaI	GTAC	2 cut(s)	111, 130
AgsI	TTSAA	4 cut(s)	80, 245, 268, 575
AluBI	AGCT	4 cut(s)	29, 65, 251, 446
AluI	AGCT	4 cut(s)	29, 65, 251, 446
Alw26I	GTCTC	2 cut(s)	357, 434
AlwNI	CAGNNNCTG	1 cut(s)	416
ApeKI	GCWGC	1 cut(s)	543
ApoI	RAATTY	2 cut(s)	406, 535
Asp700I	GAANNNNTTC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	190
BaeGI	GKGCMC	1 cut(s)	437
BaeI	ACNNNNGTAYC	2 cut(s)	165, 198
BbvCI	CCTCAGC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	555
BccI	CCATC	2 cut(s)	194, 523
BciVI	GTATCC	1 cut(s)	166
BclI	TGATCA	1 cut(s)	492
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	357, 434
BfaI	CTAG	2 cut(s)	138, 356
BfmI	CTRYAG	1 cut(s)	399
BfuI	GTATCC	1 cut(s)	166
BisI	GCNGC	1 cut(s)	544
BlsI	GCNGC	1 cut(s)	545
Bme1390I	CCNGG	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	190
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	2 cut(s)	175, 229
BmuI	ACTGGG	1 cut(s)	522
Bpu10I	CCTNAGC	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	190
BsaI	GGTCTC	1 cut(s)	357
Bse1I	ACTGG	1 cut(s)	517
BseGI	GGATG	1 cut(s)	551
BseMII	CTCAG	2 cut(s)	135, 429
BseNI	ACTGG	1 cut(s)	517
BseSI	GKGCMC	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	189
BsmAI	GTCTC	2 cut(s)	357, 434
Bso31I	GGTCTC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp1407I	TGTACA	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	492
BspACI	CCGC	1 cut(s)	555
BspCNI	CTCAG	2 cut(s)	136, 430
BspTNI	GGTCTC	1 cut(s)	357
BsrGI	TGTACA	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	517
BssMI	GATC	1 cut(s)	492
Bst4CI	ACNGT	3 cut(s)	178, 418, 566
BstAUI	TGTACA	1 cut(s)	109
BstDEI	CTNAG	4 cut(s)	58, 144, 438, 447
BstF5I	GGATG	1 cut(s)	551
BstKTI	GATC	1 cut(s)	495
BstMAI	GTCTC	2 cut(s)	357, 434
BstMBI	GATC	1 cut(s)	492
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	437
BstV1I	GCAGC	1 cut(s)	555
BsuI	GTATCC	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	551
BtsIMutI	CAGTG	1 cut(s)	510
CaiI	CAGNNNCTG	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	110, 129
CviAII	CATG	2 cut(s)	113, 496
CviJI	RGCY	7 cut(s)	5, 11, 29, 65, 251, 446, 546
CviKI_1	RGCY	7 cut(s)	5, 11, 29, 65, 251, 446, 546
CviQI	GTAC	2 cut(s)	110, 129
DdeI	CTNAG	4 cut(s)	58, 144, 438, 447
DpnI	GATC	1 cut(s)	494
DpnII	GATC	1 cut(s)	492
EciI	GGCGGA	1 cut(s)	544
Eco31I	GGTCTC	1 cut(s)	357
EcoRI	GAATTC	1 cut(s)	406
FaeI	CATG	2 cut(s)	116, 499
FaiI	YATR	3 cut(s)	114, 460, 497
FatI	CATG	2 cut(s)	112, 495
FbaI	TGATCA	1 cut(s)	492
Fnu4HI	GCNGC	1 cut(s)	544
FokI	GGATG	1 cut(s)	538
Fsp4HI	GCNGC	1 cut(s)	544
FspBI	CTAG	2 cut(s)	138, 356
GluI	GCNGC	1 cut(s)	544
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	2 cut(s)	116, 499
HinfI	GANTC	5 cut(s)	287, 323, 381, 451, 480
HpaII	CCGG	1 cut(s)	189
Hpy166II	GTNNAC	1 cut(s)	510
Hpy188I	TCNGA	2 cut(s)	166, 380
Hpy188III	TCNNGA	3 cut(s)	327, 356, 427
Hpy8I	GTNNAC	1 cut(s)	510
HpyAV	CCTTC	2 cut(s)	239, 353
HpyCH4III	ACNGT	3 cut(s)	178, 418, 566
HpyCH4V	TGCA	2 cut(s)	240, 524
HpyF3I	CTNAG	4 cut(s)	58, 144, 438, 447
Hsp92II	CATG	2 cut(s)	116, 499
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	1 cut(s)	492
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	8 cut(s)	202, 340, 412, 450, 498, 503, 553, 571
Lsp1109I	GCAGC	1 cut(s)	555
LweI	GCATC	2 cut(s)	175, 229
MaeI	CTAG	2 cut(s)	138, 356
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	1 cut(s)	494
MboI	GATC	1 cut(s)	492
MboII	GAAGA	2 cut(s)	383, 446
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	3 cut(s)	393, 406, 535
MlyI	GAGTC	1 cut(s)	489
MnlI	CCTC	5 cut(s)	118, 139, 323, 334, 342
MroXI	GAANNNNTTC	1 cut(s)	263
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	190
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	1 cut(s)	492
NlaIII	CATG	2 cut(s)	116, 499
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	4 cut(s)	287, 323, 381, 451
PkrI	GCNGC	1 cut(s)	545
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
PstNI	CAGNNNCTG	1 cut(s)	416
RsaI	GTAC	2 cut(s)	111, 130
RsaNI	GTAC	2 cut(s)	110, 129
RseI	CAYNNNNRTG	1 cut(s)	228
SatI	GCNGC	1 cut(s)	544
Sau3AI	GATC	1 cut(s)	492
SchI	GAGTC	1 cut(s)	489
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	437
SetI	ASST	7 cut(s)	31, 67, 150, 253, 353, 448, 492
SfaNI	GCATC	2 cut(s)	175, 229
SfcI	CTRYAG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	3 cut(s)	393, 406, 535
SsiI	CCGC	1 cut(s)	555
SspMI	CTAG	2 cut(s)	138, 356
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	3 cut(s)	178, 418, 566
TaqI	TCGA	1 cut(s)	118
TasI	AATT	3 cut(s)	393, 406, 535
TatI	WGTACW	1 cut(s)	109
TfiI	GAWTC	4 cut(s)	287, 323, 381, 451
TscAI	CASTG	1 cut(s)	517
TseI	GCWGC	1 cut(s)	543
TspDTI	ATGAA	1 cut(s)	336
TspRI	CASTG	1 cut(s)	517
XapI	RAATTY	2 cut(s)	406, 535
XbaI	TCTAGA	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	2 cut(s)	138, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.