Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00997

Orthogroup ID

OG0007988

Physical Location & Seq

Genomic Coordinates Reverse (-)

25254 .. 32389

Gene Structure 7136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G021590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAGGCCGCCGTGGTCGATGCTGGCTCCAAGCTCCTCAAAGCGGGCCCCGCCGTTCCCGATCAAGCTCCTGCCATGATAATTCCAAACCAAATGAAGCGCATGCCTGAGGATGGATCAATGAATGATAGTTCATCATTTGAAGATATAATTGTTGATCCAGTTGTGCGTGGTCTTATTAAAGATTGGGATGCCATGGAAGATTTGTTGCATCATATTTTATACACTGGCCTCGGATGGGAAATGGGCAATGAAGGACAGATATTATTTACTGATCCACTCTGTACTCCCAAGGCTGTCAGGGAACAGTTGGTTCAACTGATGTTTGAAACGTTTAATATATCGGGCTTCTATGCATCAGAGCAAGCAGTATTGTCACTTTATGCTGTAGGACGTATCTCGGGATGCACTGTCGATATTGGCCATGGGAAGATAGATATTGCGCCAGTAATTGAAGGGGCTGTTCAGCACATTGCTTCAAGAAGGTTTGAAATTGGAGGTATTGATTTGACGAAGTTACTCGCTGAAGAGCTTGGGAAAGAGCTTGGGAAGTCCAATCCTCTGGTGACTTTAAAGATGTCTGATGTTGAGAAAATAAAAGAGCAATATTCATGTTGTGCTGATGATGAACTTGCTTATGAAAAGATTAAAAGATCATGCCAGGCGGAACAACACACTCTTCCCGATGGACAGGTCATCACTATTGGAAGAGAAAGGTATACCGTTGGTGAGGCTTTATTCCAACCATCTATATTGGGTTTAGAGGCTCATGGAATTGTGGAGCAGCTTGTTCGTTGTATTTCAACAGTATCGTCTGATAATCACCGCCAGTTGCTGGAAAATACTGTACTGTGTGGCGGCACTGCTTCTATGACTGGTTTTGAAGAAAGGTTCCAGAAAGAAGCTGGTTTATGCTCATCTGCTGTCCGCCCTGCTTTAATTAAGCCTCCAGAATACATGCCAGAGAATTTGACAAATTATTCAGCATGGGTGGGAGGTGCCATACTAGCGAAAGTTGTGTTTCCACAAAATCAGCATGTTACCAAAGCAGACTATGATGAAAATGGACCTTCTGTTGTTCACCGGAAATGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010154 GO:0010227 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

365

Amino Acids

39.98

Weight (kDa)

4.99

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	2 - 365	2.8e-69	Actin
FtsA	PF14450	136 - 311	7.9e-06	Cell division protein FtsA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60830
fragaria_vesca	FvH4_7g01150 FvH4_7g01150 FvH4_7g01150 FvH4_7g01150
malus_domestica	MD02G1309300.v1.1 MD07G1012400.v1.1
prunus_persica	Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1
pyrus_communis	pycom07g01000
rosa_chinensis	RchiOBHm_Chr1g0316421
rosa_laevigata	RLG00000030675
rosa_multiflora	Rmu_sc0007485.1_g000001 Rmu_sc0008729.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331030
rosa_rugosa	Rorug01G0010300 Rorug01G0010400
rosa_samantha	Rh1AG020200 Rh1BG015400 Rh1DG015400
rosa_wichuraiana	Rw0G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	998
AccB7I	CCANNNNNTGG	1 cut(s)	835
AccI	GTMKAC	1 cut(s)	719
AciI	CCGC	7 cut(s)	9, 44, 51, 665, 826, 858, 928
AclI	AACGTT	1 cut(s)	332
AclWI	GGATC	3 cut(s)	124, 152, 269
AcoI	YGGCCR	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	967
AcuI	CTGAAG	1 cut(s)	546
AfaI	GTAC	2 cut(s)	286, 849
AfiI	CCNNNNNNNGG	4 cut(s)	43, 113, 238, 835
AgsI	TTSAA	8 cut(s)	143, 317, 329, 455, 480, 491, 804, 884
AjnI	CCWGG	1 cut(s)	660
AluBI	AGCT	6 cut(s)	34, 68, 532, 544, 787, 905
AluI	AGCT	6 cut(s)	34, 68, 532, 544, 787, 905
AlwI	GGATC	3 cut(s)	124, 152, 269
AlwNI	CAGNNNCTG	1 cut(s)	835
Ama87I	CYCGRG	1 cut(s)	400
AoxI	GGCC	4 cut(s)	6, 46, 229, 421
ApaI	GGGCCC	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	784
ApoI	RAATTY	1 cut(s)	967
Asp700I	GAANNNNTTC	1 cut(s)	1091
AspLEI	GCGC	2 cut(s)	102, 445
AspS9I	GGNCC	3 cut(s)	46, 47, 1067
AsuHPI	GGTGA	4 cut(s)	577, 740, 815, 1073
AvaI	CYCGRG	1 cut(s)	400
AvaII	GGWCC	1 cut(s)	1067
AxyI	CCTNAGG	1 cut(s)	108
BaeGI	GKGCMC	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	998
BanII	GRGCYC	1 cut(s)	50
BbvI	GCAGC	1 cut(s)	796
BccI	CCATC	4 cut(s)	107, 231, 680, 754
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	773, 807
BciT130I	CCWGG	1 cut(s)	662
BfaI	CTAG	1 cut(s)	1007
BfmI	CTRYAG	1 cut(s)	387
BisI	GCNGC	3 cut(s)	9, 785, 859
BlsI	GCNGC	3 cut(s)	10, 786, 860
Bme1390I	CCNGG	1 cut(s)	662
Bme18I	GGWCC	1 cut(s)	1067
BmeT110I	CYCGRG	1 cut(s)	400
BmgT120I	GGNCC	3 cut(s)	46, 47, 1067
BmiI	GGNNCC	5 cut(s)	28, 48, 49, 893, 1000
BmrFI	CCNGG	1 cut(s)	662
BmsI	GCATC	5 cut(s)	10, 181, 220, 365, 395
BpmI	CTGGAG	1 cut(s)	933
BsaJI	CCNNGG	5 cut(s)	12, 195, 232, 291, 424
BsaWI	WCCGGW	1 cut(s)	1083
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 113, 238, 835
Bse1I	ACTGG	5 cut(s)	161, 232, 446, 829, 880
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	2 cut(s)	256, 471
BseBI	CCWGG	1 cut(s)	662
BseDI	CCNNGG	5 cut(s)	12, 195, 232, 291, 424
BseGI	GGATG	4 cut(s)	118, 196, 242, 410
BseLI	CCNNNNNNNGG	4 cut(s)	43, 113, 238, 835
BseMI	GCAATG	2 cut(s)	256, 471
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	5 cut(s)	161, 232, 446, 829, 880
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	1 cut(s)	50
BseXI	GCAGC	1 cut(s)	796
BshFI	GGCC	4 cut(s)	8, 48, 231, 423
BshNI	GGYRCC	1 cut(s)	998
BsiHKCI	CYCGRG	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	1084
BslI	CCNNNNNNNGG	4 cut(s)	43, 113, 238, 835
BsnI	GGCC	4 cut(s)	8, 48, 231, 423
BsoBI	CYCGRG	1 cut(s)	400
Bsp120I	GGGCCC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp143I	GATC	5 cut(s)	61, 116, 157, 274, 653
Bsp19I	CCATGG	2 cut(s)	195, 424
BspACI	CCGC	7 cut(s)	9, 44, 51, 665, 826, 858, 928
BspANI	GGCC	4 cut(s)	8, 48, 231, 423
BspCNI	CTCAG	1 cut(s)	100
BspLI	GGNNCC	5 cut(s)	28, 48, 49, 893, 1000
BspPI	GGATC	3 cut(s)	124, 152, 269
BspQI	GCTCTTC	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	998
BsrDI	GCAATG	2 cut(s)	256, 471
BsrI	ACTGG	5 cut(s)	161, 232, 446, 829, 880
BssECI	CCNNGG	5 cut(s)	12, 195, 232, 291, 424
BssMI	GATC	5 cut(s)	61, 116, 157, 274, 653
BssNAI	GTATAC	1 cut(s)	720
BssT1I	CCWWGG	3 cut(s)	195, 291, 424
Bst1107I	GTATAC	1 cut(s)	720
Bst2UI	CCWGG	1 cut(s)	662
Bst4CI	ACNGT	6 cut(s)	309, 412, 724, 808, 847, 852
Bst6I	CTCTTC	3 cut(s)	522, 684, 703
BstC8I	GCNNGC	4 cut(s)	25, 46, 104, 366
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	3 cut(s)	12, 195, 424
BstF5I	GGATG	4 cut(s)	118, 196, 242, 410
BstHHI	GCGC	2 cut(s)	102, 445
BstKTI	GATC	5 cut(s)	64, 119, 160, 277, 656
BstMBI	GATC	5 cut(s)	61, 116, 157, 274, 653
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 1007
BstNI	CCWGG	1 cut(s)	662
BstNSI	RCATGY	3 cut(s)	106, 961, 1040
BstSCI	CCNGG	1 cut(s)	660
BstSFI	CTRYAG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	796
BstXI	CCANNNNNNTGG	1 cut(s)	562
BstZ17I	GTATAC	1 cut(s)	720
Bsu36I	CCTNAGG	1 cut(s)	108
BsuRI	GGCC	4 cut(s)	8, 48, 231, 423
BtgI	CCRYGG	3 cut(s)	12, 195, 424
BtsCI	GGATG	4 cut(s)	118, 196, 242, 410
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	3 cut(s)	225, 408, 861
Cac8I	GCNNGC	4 cut(s)	25, 46, 104, 366
CaiI	CAGNNNCTG	1 cut(s)	835
CfoI	GCGC	2 cut(s)	102, 445
Cfr13I	GGNCC	3 cut(s)	46, 47, 1067
Csp6I	GTAC	2 cut(s)	285, 848
CviQI	GTAC	2 cut(s)	285, 848
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	5 cut(s)	63, 118, 159, 276, 655
DpnII	GATC	5 cut(s)	61, 116, 157, 274, 653
DraI	TTTAAA	1 cut(s)	573
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	3 cut(s)	522, 684, 703
EarI	CTCTTC	3 cut(s)	522, 684, 703
EciI	GGCGGA	2 cut(s)	680, 917
Eco130I	CCWWGG	3 cut(s)	195, 291, 424
Eco24I	GRGCYC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	1067
Eco57I	CTGAAG	1 cut(s)	546
Eco81I	CCTNAGG	1 cut(s)	108
Eco88I	CYCGRG	1 cut(s)	400
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	660
EcoT14I	CCWWGG	3 cut(s)	195, 291, 424
EcoT22I	ATGCAT	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	3 cut(s)	195, 291, 424
FauI	CCCGC	2 cut(s)	37, 58
FblI	GTMKAC	1 cut(s)	719
Fnu4HI	GCNGC	3 cut(s)	9, 785, 859
FokI	GGATG	4 cut(s)	125, 203, 249, 417
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	3 cut(s)	9, 785, 859
FspBI	CTAG	1 cut(s)	1007
GlaI	GCGC	2 cut(s)	101, 444
GluI	GCNGC	3 cut(s)	9, 785, 859
GsuI	CTGGAG	1 cut(s)	933
HaeIII	GGCC	4 cut(s)	8, 48, 231, 423
HapII	CCGG	1 cut(s)	1084
HhaI	GCGC	2 cut(s)	102, 445
Hin6I	GCGC	2 cut(s)	100, 443
HinP1I	GCGC	2 cut(s)	100, 443
HpaII	CCGG	1 cut(s)	1084
HphI	GGTGA	4 cut(s)	577, 740, 815, 1073
Hpy166II	GTNNAC	2 cut(s)	720, 1081
Hpy188I	TCNGA	5 cut(s)	236, 361, 583, 817, 1097
Hpy188III	TCNNGA	6 cut(s)	59, 402, 480, 683, 895, 950
Hpy8I	GTNNAC	2 cut(s)	720, 1081
HpyAV	CCTTC	4 cut(s)	248, 449, 477, 1080
HpyCH4III	ACNGT	6 cut(s)	309, 412, 724, 808, 847, 852
HpyCH4IV	ACGT	2 cut(s)	332, 394
HpyCH4V	TGCA	3 cut(s)	211, 356, 408
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 1007
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	2 cut(s)	332, 394
HspAI	GCGC	2 cut(s)	100, 443
Kzo9I	GATC	5 cut(s)	61, 116, 157, 274, 653
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	4 cut(s)	32, 39, 73, 781
Lsp1109I	GCAGC	1 cut(s)	796
LweI	GCATC	5 cut(s)	10, 181, 220, 365, 395
MaeI	CTAG	1 cut(s)	1007
MaeII	ACGT	2 cut(s)	332, 394
MaeIII	GTNAC	4 cut(s)	375, 516, 565, 1039
MalI	GATC	5 cut(s)	63, 118, 159, 276, 655
MboI	GATC	5 cut(s)	61, 116, 157, 274, 653
MboII	GAAGA	7 cut(s)	155, 212, 442, 539, 671, 720, 896
MhlI	GDGCHC	1 cut(s)	50
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	8 cut(s)	81, 150, 450, 492, 774, 939, 967, 976
MluNI	TGGCCA	1 cut(s)	423
MmeI	TCCRAC	1 cut(s)	766
MnlI	CCTC	9 cut(s)	47, 103, 242, 491, 570, 724, 757, 957, 989
Mox20I	TGGCCA	1 cut(s)	423
Mph1103I	ATGCAT	1 cut(s)	358
MroXI	GAANNNNTTC	1 cut(s)	1091
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	6 cut(s)	180, 336, 572, 648, 938, 942
Msp20I	TGGCCA	1 cut(s)	423
MspI	CCGG	1 cut(s)	1084
MspR9I	CCNGG	1 cut(s)	662
MvaI	CCWGG	1 cut(s)	662
MwoI	GCNNNNNNNGC	2 cut(s)	50, 1007
NcoI	CCATGG	2 cut(s)	195, 424
NdeII	GATC	5 cut(s)	61, 116, 157, 274, 653
NlaIV	GGNNCC	5 cut(s)	28, 48, 49, 893, 1000
NmuCI	GTSAC	2 cut(s)	375, 565
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	3 cut(s)	106, 961, 1040
PacI	TTAATTAA	1 cut(s)	942
PaeI	GCATGC	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	522
PdmI	GAANNNNTTC	1 cut(s)	1091
PflMI	CCANNNNNTGG	1 cut(s)	835
PkrI	GCNGC	3 cut(s)	10, 786, 860
Psp1406I	AACGTT	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	660
PspGI	CCWGG	1 cut(s)	660
PspN4I	GGNNCC	5 cut(s)	28, 48, 49, 893, 1000
PspOMI	GGGCCC	1 cut(s)	46
PspPI	GGNCC	3 cut(s)	46, 47, 1067
PstNI	CAGNNNCTG	1 cut(s)	835
RsaI	GTAC	2 cut(s)	286, 849
RsaNI	GTAC	2 cut(s)	285, 848
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	6 cut(s)	180, 336, 572, 648, 938, 942
SatI	GCNGC	3 cut(s)	9, 785, 859
Sau3AI	GATC	5 cut(s)	61, 116, 157, 274, 653
Sau96I	GGNCC	3 cut(s)	46, 47, 1067
ScrFI	CCNGG	1 cut(s)	662
SduI	GDGCHC	1 cut(s)	50
SfaNI	GCATC	5 cut(s)	10, 181, 220, 365, 395
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	1067
SphI	GCATGC	1 cut(s)	106
Sse9I	AATT	8 cut(s)	81, 150, 450, 492, 774, 939, 967, 976
SsiI	CCGC	7 cut(s)	9, 44, 51, 665, 826, 858, 928
SspI	AATATT	1 cut(s)	608
SspMI	CTAG	1 cut(s)	1007
StyD4I	CCNGG	1 cut(s)	660
StyI	CCWWGG	3 cut(s)	195, 291, 424
TaaI	ACNGT	6 cut(s)	309, 412, 724, 808, 847, 852
TaiI	ACGT	2 cut(s)	335, 397
TaqI	TCGA	2 cut(s)	18, 414
TasI	AATT	8 cut(s)	81, 150, 450, 492, 774, 939, 967, 976
TatI	WGTACW	2 cut(s)	284, 847
TauI	GCSGC	2 cut(s)	11, 861
Tru1I	TTAA	6 cut(s)	180, 336, 572, 648, 938, 942
Tru9I	TTAA	6 cut(s)	180, 336, 572, 648, 938, 942
TscAI	CASTG	3 cut(s)	232, 415, 868
TseFI	GTSAC	2 cut(s)	375, 565
TseI	GCWGC	1 cut(s)	784
Tsp45I	GTSAC	2 cut(s)	375, 565
TspDTI	ATGAA	8 cut(s)	110, 123, 137, 267, 600, 642, 654, 1074
TspRI	CASTG	3 cut(s)	232, 415, 868
Van91I	CCANNNNNTGG	1 cut(s)	835
VpaK11BI	GGWCC	1 cut(s)	1067
XapI	RAATTY	1 cut(s)	967
XceI	RCATGY	3 cut(s)	106, 961, 1040
XcmI	CCANNNNNNNNNTGG	1 cut(s)	902
XmiI	GTMKAC	1 cut(s)	719
XmnI	GAANNNNTTC	1 cut(s)	1091
XspI	CTAG	1 cut(s)	1007
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.