Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007988

Physical Location & Seq

Genomic Coordinates Reverse (-)

1560467 .. 1565689

Gene Structure 5223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g01150.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGAGGCCGTGGTTGTCGATATTGGCTCCAAGCTCCTCAAGGCGGGACCCGCCGTTCCCGATCAAGCTCCTGCCTTGATAATTCCCAACCAAATGAAACGCATCCCTGAGGATGGATCAATGAATGATAGTTCACCATTTGAAGATATAATTGTTGAGCCGGTTGAGCGGGGTTTTATTAAAGACTGGGATGCCATGGAAGACCTGTTGCATCATATTCTATACACCGGTCTTGGATGGGAAATAGGCAATGAAGGGCAGATATTATTTACTGATCCACTGTGTACTCCCAAGGCTGCCAGAGAACAGTTGGTACAACTGATGTTTGAAACATTCAACATATCGGGCTTCTATGCATCAGAGCAAGCAGTATTGTCACTTTATGCTGTAGGACGTATCTCCGGATGCACTGTTGATATTGGGCATGGGAAGATTGATATTGCCCCAGTAATTGAAGGGGCGGTTCAGCACATTGCCTCTAGAAGGTTTGAAATTGGAGGTATTGATTTGACAAAGTTACTTGCTGAAGAGCTTGGGAAATCCAATCCTCTGGTGAATATCAAGATGTCTGATGTTGAGAAAATAAAAGAGCAATTTTCATGTTGTGCTGATGATGAACTTGCTTATGAAAAGATTAAAAGATCCTGCCAGACAGAACAACATACCCTTCCTGATGGACAGGTCATTACAATTGGAAGGGAAAGGTATACTGTTGGGGAGGCATTATTCCAACCATCTATACTGGGTTTAGAGGCTCATGGAATTGTTGAGCAACTTGTTCGTTGTATTTCCACAGTATCCTCGGATAATCACCGGCAATTGCTGGAAAATACAGTACTGTGTGGTGGCACTGCTTCTATGACTGGTTTTGAAGAACGGTTCCATAAAGAAGCTGGTCTATGCTCATCTGCTGTCCGCCCTGCTTTAATTAAGCCTCCAGAATACATGCCGGAGAACTTGACAAACTATTCAGCATGGGTGGGGGGTGCCATACTTGCCAAAGTTGTGTTTCCACAGAATCAGCATGTTACCAAAGGAGACTATGATGAAAATGGCCCTTCAGTTGTTCACCGGAAATGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010154 GO:0010227 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

362

Amino Acids

39.65

Weight (kDa)

4.99

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	2 - 298	3.2e-55	Actin
FtsA	PF14450	136 - 298	5.5e-06	Cell division protein FtsA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60830
fragaria_vesca	FvH4_7g01150 FvH4_7g01150 FvH4_7g01150 FvH4_7g01150
malus_domestica	MD02G1309300.v1.1 MD07G1012400.v1.1
prunus_persica	Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1
pyrus_communis	pycom07g01000
rosa_chinensis	RchiOBHm_Chr1g0316421
rosa_laevigata	RLG00000030675
rosa_multiflora	Rmu_sc0007485.1_g000001 Rmu_sc0008729.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331030
rosa_rugosa	Rorug01G0010300 Rorug01G0010400
rosa_samantha	Rh1AG020200 Rh1BG015400 Rh1DG015400
rosa_wichuraiana	Rw0G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	986
AccBSI	CCGCTC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	707
AccIII	TCCGGA	1 cut(s)	401
AciI	CCGC	5 cut(s)	44, 51, 169, 461, 916
AclWI	GGATC	3 cut(s)	124, 269, 636
AcuI	CTGAAG	2 cut(s)	546, 1044
AfaI	GTAC	3 cut(s)	286, 315, 837
AfiI	CCNNNNNNNGG	3 cut(s)	43, 113, 483
AgeI	ACCGGT	1 cut(s)	227
AgsI	TTSAA	6 cut(s)	143, 329, 337, 455, 491, 872
AloI	GAACNNNNNNTCC	2 cut(s)	39, 71
AluBI	AGCT	4 cut(s)	34, 68, 532, 893
AluI	AGCT	4 cut(s)	34, 68, 532, 893
Alw26I	GTCTC	1 cut(s)	1032
AlwI	GGATC	3 cut(s)	124, 269, 636
Aor13HI	TCCGGA	1 cut(s)	401
AoxI	GGCC	2 cut(s)	6, 1054
ApeKI	GCWGC	1 cut(s)	296
AsiGI	ACCGGT	1 cut(s)	227
Asp700I	GAANNNNTTC	1 cut(s)	1079
AspS9I	GGNCC	2 cut(s)	47, 1055
AsuHPI	GGTGA	4 cut(s)	126, 565, 803, 1061
AvaII	GGWCC	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	986
BbsI	GAAGAC	1 cut(s)	207
BbvI	GCAGC	1 cut(s)	283
BccI	CCATC	4 cut(s)	107, 231, 668, 742
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	2 cut(s)	761, 795
BciVI	GTATCC	1 cut(s)	808
BcoDI	GTCTC	1 cut(s)	1032
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	1 cut(s)	387
BfuI	GTATCC	1 cut(s)	808
BisI	GCNGC	1 cut(s)	297
BlsI	GCNGC	1 cut(s)	298
BmcAI	AGTACT	1 cut(s)	837
Bme18I	GGWCC	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	47, 1055
BmiI	GGNNCC	5 cut(s)	28, 48, 49, 881, 988
BmrI	ACTGGG	3 cut(s)	196, 440, 752
BmsI	GCATC	5 cut(s)	111, 181, 220, 365, 395
BmuI	ACTGGG	3 cut(s)	196, 440, 752
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	921
BpuEI	CTTGAG	1 cut(s)	23
BsaJI	CCNNGG	4 cut(s)	9, 195, 291, 801
BsaWI	WCCGGW	3 cut(s)	227, 401, 1071
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 113, 483
Bse118I	RCCGGY	3 cut(s)	160, 227, 813
Bse1I	ACTGG	4 cut(s)	191, 446, 747, 868
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	2 cut(s)	256, 471
BseAI	TCCGGA	1 cut(s)	401
BseDI	CCNNGG	4 cut(s)	9, 195, 291, 801
BseGI	GGATG	5 cut(s)	102, 118, 196, 242, 410
BseLI	CCNNNNNNNGG	3 cut(s)	43, 113, 483
BseMI	GCAATG	2 cut(s)	256, 471
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	4 cut(s)	191, 446, 747, 868
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	283
BshFI	GGCC	2 cut(s)	8, 1056
BshNI	GGYRCC	1 cut(s)	986
BshTI	ACCGGT	1 cut(s)	227
BsiSI	CCGG	6 cut(s)	161, 228, 402, 814, 950, 1072
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	3 cut(s)	43, 113, 483
BsmAI	GTCTC	1 cut(s)	1032
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	2 cut(s)	8, 1056
Bsp13I	TCCGGA	1 cut(s)	401
Bsp143I	GATC	4 cut(s)	61, 116, 274, 641
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	5 cut(s)	44, 51, 169, 461, 916
BspANI	GGCC	2 cut(s)	8, 1056
BspCNI	CTCAG	1 cut(s)	100
BspEI	TCCGGA	1 cut(s)	401
BspLI	GGNNCC	5 cut(s)	28, 48, 49, 881, 988
BspPI	GGATC	3 cut(s)	124, 269, 636
BspQI	GCTCTTC	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	986
BsrBI	CCGCTC	1 cut(s)	169
BsrDI	GCAATG	2 cut(s)	256, 471
BsrFI	RCCGGY	3 cut(s)	160, 227, 813
BsrI	ACTGG	4 cut(s)	191, 446, 747, 868
BssAI	RCCGGY	3 cut(s)	160, 227, 813
BssECI	CCNNGG	4 cut(s)	9, 195, 291, 801
BssMI	GATC	4 cut(s)	61, 116, 274, 641
BssNAI	GTATAC	1 cut(s)	708
BssT1I	CCWWGG	2 cut(s)	195, 291
Bst1107I	GTATAC	1 cut(s)	708
Bst4CI	ACNGT	8 cut(s)	282, 309, 412, 712, 796, 835, 840, 879
Bst6I	CTCTTC	1 cut(s)	522
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	2 cut(s)	9, 195
BstENI	CCTNNNNNAGG	1 cut(s)	481
BstF5I	GGATG	5 cut(s)	102, 118, 196, 242, 410
BstKTI	GATC	4 cut(s)	64, 119, 277, 644
BstMAI	GTCTC	1 cut(s)	1032
BstMBI	GATC	4 cut(s)	61, 116, 274, 641
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 166, 995
BstNSI	RCATGY	2 cut(s)	949, 1028
BstSFI	CTRYAG	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	283
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	641
BstXI	CCANNNNNNTGG	1 cut(s)	550
BstYI	RGATCY	1 cut(s)	641
BstZ17I	GTATAC	1 cut(s)	708
Bsu36I	CCTNAGG	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	808
BsuRI	GGCC	2 cut(s)	8, 1056
BtgI	CCRYGG	2 cut(s)	9, 195
BtsCI	GGATG	5 cut(s)	102, 118, 196, 242, 410
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	3 cut(s)	278, 408, 849
Cac8I	GCNNGC	1 cut(s)	366
Cfr10I	RCCGGY	3 cut(s)	160, 227, 813
Cfr13I	GGNCC	2 cut(s)	47, 1055
Csp6I	GTAC	3 cut(s)	285, 314, 836
CspAI	ACCGGT	1 cut(s)	227
CviAII	CATG	7 cut(s)	196, 425, 600, 758, 946, 975, 1025
CviQI	GTAC	3 cut(s)	285, 314, 836
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	4 cut(s)	63, 118, 276, 643
DpnII	GATC	4 cut(s)	61, 116, 274, 641
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
EciI	GGCGGA	1 cut(s)	905
Eco130I	CCWWGG	2 cut(s)	195, 291
Eco47I	GGWCC	1 cut(s)	47
Eco57I	CTGAAG	2 cut(s)	546, 1044
Eco81I	CCTNAGG	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	47
EcoT14I	CCWWGG	2 cut(s)	195, 291
EcoT22I	ATGCAT	1 cut(s)	358
ErhI	CCWWGG	2 cut(s)	195, 291
FaeI	CATG	7 cut(s)	199, 428, 603, 761, 949, 978, 1028
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	7 cut(s)	195, 424, 599, 757, 945, 974, 1024
FauI	CCCGC	3 cut(s)	37, 58, 162
FblI	GTMKAC	1 cut(s)	707
Fnu4HI	GCNGC	1 cut(s)	297
FokI	GGATG	5 cut(s)	89, 125, 203, 249, 417
Fsp4HI	GCNGC	1 cut(s)	297
FspBI	CTAG	1 cut(s)	480
GluI	GCNGC	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	921
HaeIII	GGCC	2 cut(s)	8, 1056
HapII	CCGG	6 cut(s)	161, 228, 402, 814, 950, 1072
Hin1II	CATG	7 cut(s)	199, 428, 603, 761, 949, 978, 1028
HinfI	GANTC	1 cut(s)	1018
HpaII	CCGG	6 cut(s)	161, 228, 402, 814, 950, 1072
HphI	GGTGA	4 cut(s)	126, 565, 803, 1061
Hpy166II	GTNNAC	4 cut(s)	134, 285, 708, 1069
Hpy188I	TCNGA	3 cut(s)	361, 571, 805
Hpy188III	TCNNGA	6 cut(s)	59, 402, 480, 562, 671, 938
Hpy8I	GTNNAC	4 cut(s)	134, 285, 708, 1069
HpyAV	CCTTC	6 cut(s)	248, 449, 477, 677, 690, 1068
HpyCH4III	ACNGT	8 cut(s)	282, 309, 412, 712, 796, 835, 840, 879
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	3 cut(s)	211, 356, 408
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 166, 995
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	7 cut(s)	199, 428, 603, 761, 949, 978, 1028
KflI	GGGWCCC	1 cut(s)	47
Kpn2I	TCCGGA	1 cut(s)	401
Kzo9I	GATC	4 cut(s)	61, 116, 274, 641
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	3 cut(s)	32, 39, 73
Lsp1109I	GCAGC	1 cut(s)	283
LweI	GCATC	5 cut(s)	111, 181, 220, 365, 395
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	3 cut(s)	375, 516, 1027
MalI	GATC	4 cut(s)	63, 118, 276, 643
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	4 cut(s)	61, 116, 274, 641
MboII	GAAGA	5 cut(s)	155, 212, 442, 539, 884
MfeI	CAATTG	2 cut(s)	690, 818
MflI	RGATCY	1 cut(s)	641
MluCI	AATT	9 cut(s)	81, 150, 450, 492, 593, 690, 762, 818, 927
MmeI	TCCRAC	1 cut(s)	754
MnlI	CCTC	9 cut(s)	47, 103, 487, 491, 558, 712, 745, 811, 945
Mph1103I	ATGCAT	1 cut(s)	358
MroI	TCCGGA	1 cut(s)	401
MroXI	GAANNNNTTC	1 cut(s)	1079
MseI	TTAA	4 cut(s)	180, 636, 926, 930
MspI	CCGG	6 cut(s)	161, 228, 402, 814, 950, 1072
MunI	CAATTG	2 cut(s)	690, 818
MwoI	GCNNNNNNNGC	3 cut(s)	50, 166, 995
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	4 cut(s)	61, 116, 274, 641
NlaIII	CATG	7 cut(s)	199, 428, 603, 761, 949, 978, 1028
NlaIV	GGNNCC	5 cut(s)	28, 48, 49, 881, 988
NmuCI	GTSAC	1 cut(s)	375
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	2 cut(s)	949, 1028
PacI	TTAATTAA	1 cut(s)	930
PciSI	GCTCTTC	1 cut(s)	522
PdmI	GAANNNNTTC	1 cut(s)	1079
PfeI	GAWTC	1 cut(s)	1018
PinAI	ACCGGT	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	298
PpuMI	RGGWCCY	1 cut(s)	47
Psp5II	RGGWCCY	1 cut(s)	47
PspN4I	GGNNCC	5 cut(s)	28, 48, 49, 881, 988
PspPI	GGNCC	2 cut(s)	47, 1055
PspPPI	RGGWCCY	1 cut(s)	47
PsrI	GAACNNNNNNTAC	2 cut(s)	297, 329
PsuI	RGATCY	1 cut(s)	641
RsaI	GTAC	3 cut(s)	286, 315, 837
RsaNI	GTAC	3 cut(s)	285, 314, 836
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	4 cut(s)	180, 636, 926, 930
SatI	GCNGC	1 cut(s)	297
Sau3AI	GATC	4 cut(s)	61, 116, 274, 641
Sau96I	GGNCC	2 cut(s)	47, 1055
ScaI	AGTACT	1 cut(s)	837
SfaNI	GCATC	5 cut(s)	111, 181, 220, 365, 395
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	9 cut(s)	81, 150, 450, 492, 593, 690, 762, 818, 927
SsiI	CCGC	5 cut(s)	44, 51, 169, 461, 916
SspMI	CTAG	1 cut(s)	480
StyI	CCWWGG	2 cut(s)	195, 291
TaaI	ACNGT	8 cut(s)	282, 309, 412, 712, 796, 835, 840, 879
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	1 cut(s)	18
TasI	AATT	9 cut(s)	81, 150, 450, 492, 593, 690, 762, 818, 927
TatI	WGTACW	2 cut(s)	284, 835
TfiI	GAWTC	1 cut(s)	1018
Tru1I	TTAA	4 cut(s)	180, 636, 926, 930
Tru9I	TTAA	4 cut(s)	180, 636, 926, 930
TscAI	CASTG	3 cut(s)	285, 415, 856
TseFI	GTSAC	1 cut(s)	375
TseI	GCWGC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	375
TspDTI	ATGAA	7 cut(s)	110, 137, 267, 588, 630, 642, 1062
TspRI	CASTG	3 cut(s)	285, 415, 856
VpaK11BI	GGWCC	1 cut(s)	47
XagI	CCTNNNNNAGG	1 cut(s)	481
XbaI	TCTAGA	1 cut(s)	479
XceI	RCATGY	2 cut(s)	949, 1028
XcmI	CCANNNNNNNNNTGG	2 cut(s)	307, 890
XmiI	GTMKAC	1 cut(s)	707
XmnI	GAANNNNTTC	1 cut(s)	1079
XspI	CTAG	1 cut(s)	480
ZrmI	AGTACT	1 cut(s)	837
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.