Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007988

Physical Location & Seq

Genomic Coordinates Forward (+)

36452754 .. 36459284

Gene Structure 6531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1309300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAGGCTGCCGTGGTCGACGTCGGCTCCAAGCTCCTCAAAGCGGGATCCGCCATTCCCGATCAAGCTCCTTCCATGATAATTCCTAACCAAATGAAACAGCTTGATTTTGGATCAATGAATGATACTTCATCACTTGAAGATATCGTTGTTGATCCAGTTGTGCGAGGTCTTATTACTGACTGGGATGCCATGGAAGACCTGTTGCATCATGTTCTATATACTGGCCTTGGATGGGAAATGGGCAACGAAGGGCAGATACTATTTACTGATCCACTTTGTACTCCCAAGTCTGTCAGAGAGCAGTTGGTGCAACTTATGTTTGAGACATTTAACACTTCAGGCTTCTATGCATCAGAGCAAGCAGTATTGTCACTTTATGCTGTTGGACGTATCTCGGGATGCACTGTTGATATTGGCCATGGAAAAATAGATATTGCACCAGTCGTTGAAGGTGCTGTTCAGCACATTGCCTCAAGAAGGTTTGAAATTGGAGGTACTGATTTGACAAAATTACTTGCTCAAGAGCTTGGGAAATCTAATCCTTTAGTGAATATCAAGATGTCTGATATAGAGAAAATAAAAGAGCAATATTCATGTTGTGCTGAAGATGAACTTGCTTATGAAAAGACCAAAAATTCATGCCAGATAGAGCAACATACCCTTCCTGATGGACAGGTCATTAGGATTGGAAGAGAAAGATATACTGTTGGTGAGGCTTTATTTCAACCATCCATATTGGGTTTAGAGGCTCATGGAATTGTTGAGCAGCTTGTTCGTTGTATTTCAACAGTATCGTCTGATAATCATCGGCAGTTGCTGGAAAATACGGTACTGTGTGGTGGCACCATTTCTATGATTGGTTTTGAAGAAAGGTTTCAGAAAGAAGCTGGTCTATGCTCATCAGCCGTTCGTCCTGCTTTAATTAAGCCTCCAGAGTATATGCCAGAGAATTTATCAATGTATTCAGCGTGGGTGGGAGGTGCCATACTTGCCAAAGTCGTGTTCCCACAAAACCAACATATAACAAAAGCAGATTACGATGAAACTGGACCTTCTGTTGTTCATCGGAAATGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010154 GO:0010227 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

361

Amino Acids

39.52

Weight (kDa)

4.96

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Actin	PF00022	2 - 360	1.9e-66	Actin
FtsA	PF14450	135 - 270	4.3e-06	Cell division protein FtsA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60830
fragaria_vesca	FvH4_7g01150 FvH4_7g01150 FvH4_7g01150 FvH4_7g01150
malus_domestica	MD02G1309300.v1.1 MD07G1012400.v1.1
prunus_persica	Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1
pyrus_communis	pycom07g01000
rosa_chinensis	RchiOBHm_Chr1g0316421
rosa_laevigata	RLG00000030675
rosa_multiflora	Rmu_sc0007485.1_g000001 Rmu_sc0008729.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331030
rosa_rugosa	Rorug01G0010300 Rorug01G0010400
rosa_samantha	Rh1AG020200 Rh1BG015400 Rh1DG015400
rosa_wichuraiana	Rw0G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AccB1I	GGYRCC	2 cut(s)	845, 983
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	2 cut(s)	44, 51
AclWI	GGATC	5 cut(s)	42, 55, 121, 149, 266
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	2 cut(s)	637, 952
AcuI	CTGAAG	2 cut(s)	324, 627
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	3 cut(s)	283, 499, 834
AfiI	CCNNNNNNNGG	3 cut(s)	43, 235, 480
AgsI	TTSAA	6 cut(s)	140, 452, 488, 728, 789, 869
AjuI	GAANNNNNNNTTGG	2 cut(s)	989, 1021
AluBI	AGCT	6 cut(s)	34, 68, 103, 529, 772, 890
AluI	AGCT	6 cut(s)	34, 68, 103, 529, 772, 890
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	5 cut(s)	42, 55, 121, 149, 266
AlwNI	CAGNNNCTG	1 cut(s)	820
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	2 cut(s)	226, 418
ApeKI	GCWGC	2 cut(s)	8, 769
ApoI	RAATTY	2 cut(s)	637, 952
Asp700I	GAANNNNTTC	1 cut(s)	876
AspS9I	GGNCC	1 cut(s)	1052
AsuHPI	GGTGA	1 cut(s)	725
AvaI	CYCGRG	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	1052
BalI	TGGCCA	1 cut(s)	420
BamHI	GGATCC	1 cut(s)	47
BanI	GGYRCC	2 cut(s)	845, 983
BarI	GAAGNNNNNNTAC	2 cut(s)	243, 275
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	781
BccI	CCATC	3 cut(s)	228, 665, 739
BceAI	ACGGC	1 cut(s)	893
BcgI	CGANNNNNNTGC	2 cut(s)	758, 792
BcoDI	GTCTC	1 cut(s)	320
BisI	GCNGC	2 cut(s)	9, 770
BlsI	GCNGC	2 cut(s)	10, 771
Bme18I	GGWCC	1 cut(s)	1052
BmeT110I	CYCGRG	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	1052
BmiI	GGNNCC	4 cut(s)	28, 49, 847, 985
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	4 cut(s)	178, 217, 362, 392
BmuI	ACTGGG	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	918
BpuEI	CTTGAG	2 cut(s)	460, 507
BsaBI	GATNNNNATC	1 cut(s)	807
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	4 cut(s)	12, 192, 229, 421
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 235, 480
Bse1I	ACTGG	5 cut(s)	158, 188, 229, 443, 1054
Bse3DI	GCAATG	1 cut(s)	468
Bse8I	GATNNNNATC	1 cut(s)	807
BseDI	CCNNGG	4 cut(s)	12, 192, 229, 421
BseGI	GGATG	4 cut(s)	193, 239, 407, 731
BseJI	GATNNNNATC	1 cut(s)	807
BseLI	CCNNNNNNNGG	3 cut(s)	43, 235, 480
BseMI	GCAATG	1 cut(s)	468
BseNI	ACTGG	5 cut(s)	158, 188, 229, 443, 1054
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	781
BshFI	GGCC	2 cut(s)	228, 420
BshNI	GGYRCC	2 cut(s)	845, 983
BsiHKCI	CYCGRG	1 cut(s)	397
BslI	CCNNNNNNNGG	3 cut(s)	43, 235, 480
BsmAI	GTCTC	1 cut(s)	320
BsnI	GGCC	2 cut(s)	228, 420
BsoBI	CYCGRG	1 cut(s)	397
Bsp143I	GATC	5 cut(s)	47, 61, 113, 154, 271
Bsp19I	CCATGG	2 cut(s)	192, 421
BspACI	CCGC	2 cut(s)	44, 51
BspANI	GGCC	2 cut(s)	228, 420
BspLI	GGNNCC	4 cut(s)	28, 49, 847, 985
BspPI	GGATC	5 cut(s)	42, 55, 121, 149, 266
BspT107I	GGYRCC	2 cut(s)	845, 983
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	5 cut(s)	158, 188, 229, 443, 1054
BssECI	CCNNGG	4 cut(s)	12, 192, 229, 421
BssMI	GATC	5 cut(s)	47, 61, 113, 154, 271
BssNI	GRCGYC	1 cut(s)	21
BssT1I	CCWWGG	3 cut(s)	192, 229, 421
Bst4CI	ACNGT	5 cut(s)	409, 709, 793, 832, 837
Bst6I	CTCTTC	1 cut(s)	688
BstACI	GRCGYC	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	363
BstDSI	CCRYGG	3 cut(s)	12, 192, 421
BstENI	CCTNNNNNAGG	1 cut(s)	478
BstF5I	GGATG	4 cut(s)	193, 239, 407, 731
BstKTI	GATC	5 cut(s)	50, 64, 116, 157, 274
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	5 cut(s)	47, 61, 113, 154, 271
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 310, 992
BstV1I	GCAGC	1 cut(s)	781
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	228, 420
BtgI	CCRYGG	3 cut(s)	12, 192, 421
BtsCI	GGATG	4 cut(s)	193, 239, 407, 731
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	363
CaiI	CAGNNNCTG	1 cut(s)	820
Cfr13I	GGNCC	1 cut(s)	1052
Csp6I	GTAC	3 cut(s)	282, 498, 833
CviAII	CATG	7 cut(s)	76, 193, 212, 422, 597, 642, 755
CviQI	GTAC	3 cut(s)	282, 498, 833
DpnI	GATC	5 cut(s)	49, 63, 115, 156, 273
DpnII	GATC	5 cut(s)	47, 61, 113, 154, 271
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	688
EarI	CTCTTC	1 cut(s)	688
EciI	GGCGGA	1 cut(s)	40
Eco130I	CCWWGG	3 cut(s)	192, 229, 421
Eco32I	GATATC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	1052
Eco57I	CTGAAG	2 cut(s)	324, 627
Eco88I	CYCGRG	1 cut(s)	397
EcoNI	CCTNNNNNAGG	1 cut(s)	478
EcoRV	GATATC	1 cut(s)	145
EcoT14I	CCWWGG	3 cut(s)	192, 229, 421
EcoT22I	ATGCAT	1 cut(s)	355
ErhI	CCWWGG	3 cut(s)	192, 229, 421
FaeI	CATG	7 cut(s)	79, 196, 215, 425, 600, 645, 758
FalI	AAGNNNNNCTT	2 cut(s)	600, 632
FatI	CATG	7 cut(s)	75, 192, 211, 421, 596, 641, 754
FauI	CCCGC	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	9, 770
FokI	GGATG	4 cut(s)	200, 246, 414, 718
Fsp4HI	GCNGC	2 cut(s)	9, 770
GluI	GCNGC	2 cut(s)	9, 770
GsuI	CTGGAG	1 cut(s)	918
HaeIII	GGCC	2 cut(s)	228, 420
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	7 cut(s)	79, 196, 215, 425, 600, 645, 758
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	6 cut(s)	299, 358, 568, 802, 882, 1071
Hpy188III	TCNNGA	7 cut(s)	59, 399, 477, 524, 559, 668, 935
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	2 cut(s)	23, 26
HpyAV	CCTTC	6 cut(s)	81, 245, 446, 474, 674, 1065
HpyCH4III	ACNGT	5 cut(s)	409, 709, 793, 832, 837
HpyCH4IV	ACGT	2 cut(s)	21, 391
HpyCH4V	TGCA	5 cut(s)	208, 313, 353, 405, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 310, 992
HpySE526I	ACGT	2 cut(s)	21, 391
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	7 cut(s)	79, 196, 215, 425, 600, 645, 758
Kzo9I	GATC	5 cut(s)	47, 61, 113, 154, 271
LmnI	GCTCC	3 cut(s)	32, 39, 73
Lsp1109I	GCAGC	1 cut(s)	781
LweI	GCATC	4 cut(s)	178, 217, 362, 392
MaeII	ACGT	2 cut(s)	21, 391
MaeIII	GTNAC	1 cut(s)	372
MalI	GATC	5 cut(s)	49, 63, 115, 156, 273
MboI	GATC	5 cut(s)	47, 61, 113, 154, 271
MboII	GAAGA	5 cut(s)	152, 209, 620, 705, 881
MflI	RGATCY	1 cut(s)	47
MlsI	TGGCCA	1 cut(s)	420
MluCI	AATT	7 cut(s)	81, 489, 512, 637, 759, 924, 952
MluNI	TGGCCA	1 cut(s)	420
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	8 cut(s)	47, 161, 484, 488, 709, 742, 942, 974
Mox20I	TGGCCA	1 cut(s)	420
Mph1103I	ATGCAT	1 cut(s)	355
MroXI	GAANNNNTTC	1 cut(s)	876
MscI	TGGCCA	1 cut(s)	420
MseI	TTAA	3 cut(s)	333, 923, 927
MslI	CAYNNNNRTG	1 cut(s)	854
Msp20I	TGGCCA	1 cut(s)	420
MwoI	GCNNNNNNNGC	3 cut(s)	50, 310, 992
NcoI	CCATGG	2 cut(s)	192, 421
NdeII	GATC	5 cut(s)	47, 61, 113, 154, 271
NlaIII	CATG	7 cut(s)	79, 196, 215, 425, 600, 645, 758
NlaIV	GGNNCC	4 cut(s)	28, 49, 847, 985
NmuCI	GTSAC	1 cut(s)	372
NsiI	ATGCAT	1 cut(s)	355
PacI	TTAATTAA	1 cut(s)	927
PdmI	GAANNNNTTC	1 cut(s)	876
PkrI	GCNGC	2 cut(s)	10, 771
PspN4I	GGNNCC	4 cut(s)	28, 49, 847, 985
PspPI	GGNCC	1 cut(s)	1052
PstNI	CAGNNNCTG	1 cut(s)	820
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	3 cut(s)	283, 499, 834
RsaNI	GTAC	3 cut(s)	282, 498, 833
RseI	CAYNNNNRTG	1 cut(s)	854
SalI	GTCGAC	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	333, 923, 927
SatI	GCNGC	2 cut(s)	9, 770
Sau3AI	GATC	5 cut(s)	47, 61, 113, 154, 271
Sau96I	GGNCC	1 cut(s)	1052
SfaNI	GCATC	4 cut(s)	178, 217, 362, 392
SinI	GGWCC	1 cut(s)	1052
SmiMI	CAYNNNNRTG	1 cut(s)	854
SmlI	CTYRAG	2 cut(s)	475, 522
SmoI	CTYRAG	2 cut(s)	475, 522
Sse9I	AATT	7 cut(s)	81, 489, 512, 637, 759, 924, 952
SsiI	CCGC	2 cut(s)	44, 51
SspI	AATATT	1 cut(s)	593
StyI	CCWWGG	3 cut(s)	192, 229, 421
TaaI	ACNGT	5 cut(s)	409, 709, 793, 832, 837
TaiI	ACGT	2 cut(s)	24, 394
TaqI	TCGA	1 cut(s)	18
TasI	AATT	7 cut(s)	81, 489, 512, 637, 759, 924, 952
TatI	WGTACW	1 cut(s)	281
Tru1I	TTAA	3 cut(s)	333, 923, 927
Tru9I	TTAA	3 cut(s)	333, 923, 927
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	372
TseI	GCWGC	2 cut(s)	8, 769
Tsp45I	GTSAC	1 cut(s)	372
TspDTI	ATGAA	9 cut(s)	110, 120, 134, 585, 627, 630, 639, 1055, 1059
TspRI	CASTG	1 cut(s)	412
VpaK11BI	GGWCC	1 cut(s)	1052
XagI	CCTNNNNNAGG	1 cut(s)	478
XapI	RAATTY	2 cut(s)	637, 952
XmiI	GTMKAC	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	876
ZraI	GACGTC	1 cut(s)	22
Zsp2I	ATGCAT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.