Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007988

Physical Location & Seq

Genomic Coordinates Forward (+)

1811039 .. 1818639

Gene Structure 7601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0010400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAGCTCAAAGATAAAGCTGCTGAATTGACTTCACTAGGTTTCACTGTGATTTGGTTACCACCCCCTACAGATTCTGTGTCGCCTGAAGGGTACATGCCGACGGATTTGTATAATCTGAACTCCAGACAGGGTGTGGCATTGAATTTTTCAACTGGTTTCAGTTCAGTAATGGCAACAAAAACTGGAAGAACAAAGATGATGAGACTTTTACGAGATGATGATGCAGAGGATCAAGGTAGTCAAAGACAGGGAGAGAGAATATCTGATTATCAAGCTTTGGTTGCTGTTTTTGATATGGACACACGTTCTCAGATTATATCAAAAAAGCGGAAACAAGTCCCCTTGTTCAGTGGTGTGACAATTCAAGATGCTCTTAAGAAAAACTCCATTGAAGTTACAGAGGAGCACTTGCAGCAGCTCAGATATGACCCAAAGTCAGTTTGGGGTTATGTTAAGATTCACATTGAACAAGGGCCTGTACTGGAATGGGTTGGTTTTCCTCTAGGAGTTGTTAAAGGCATAGCTGGACAGACAAGACTAAAGGTTACAATGAGAGGTTCCCAGGGGTATGCTGGAACAGTTCCAATGTCCATGCGTCATGACCCTATGGCTGCTGCTGCAGAAGCCATTGTATTGTTAGAAAGCCTATGTAAGCATCCTCAAGATTTTCTGTCTTTTGATGGTCAGTGCAAAAGTTACTCATTAGAATCACTTTCAACTTACTCGTTTGTACCGTTGGTGAGATATCGACTTGGCCAAGTGCAAGTAATGTTATTCAAGGACAGGCAAGAAGTAACATTCACAGTAGATTTACGTGCAATTGATGACATGGGACATGAAGCTGTTGTATGTGAATTATCTAACCGATTGTATCAAATATGTGATAGGCGTTCAGTTTCGTGCACAATTGATCGTAAGCATGATGCAAATGCAGTCATTTGCGATTCTGAGCTGACTTCGAAGCTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009838 GO:0009908 GO:0009987 GO:0010154 GO:0010227 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0051276 GO:0061458 GO:0071840 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Actin

Protein Analysis

324

Amino Acids

36.34

Weight (kDa)

6.61

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007988)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G60830
fragaria_vesca	FvH4_7g01150 FvH4_7g01150 FvH4_7g01150 FvH4_7g01150
malus_domestica	MD02G1309300.v1.1 MD07G1012400.v1.1
prunus_persica	Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1 Prupe.2G014900_v2.0.a1
pyrus_communis	pycom07g01000
rosa_chinensis	RchiOBHm_Chr1g0316421
rosa_laevigata	RLG00000030675
rosa_multiflora	Rmu_sc0007485.1_g000001 Rmu_sc0008729.1_g000001
rosa_roxburghii	Rroxscaffold_4G00331030
rosa_rugosa	Rorug01G0010300 Rorug01G0010400
rosa_samantha	Rh1AG020200 Rh1BG015400 Rh1DG015400
rosa_wichuraiana	Rw0G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	331
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	3 cut(s)	95, 483, 735
AflII	CTTAAG	1 cut(s)	377
AflIII	ACRYGT	1 cut(s)	305
AgsI	TTSAA	7 cut(s)	145, 153, 368, 395, 470, 720, 781
AhdI	GACNNNNNGTC	1 cut(s)	436
AjnI	CCWGG	1 cut(s)	564
AluBI	AGCT	8 cut(s)	7, 20, 278, 421, 527, 845, 955, 967
AluI	AGCT	8 cut(s)	7, 20, 278, 421, 527, 845, 955, 967
Alw21I	GWGCWC	3 cut(s)	9, 411, 908
Alw26I	GTCTC	1 cut(s)	199
Alw44I	GTGCAC	1 cut(s)	904
AlwI	GGATC	1 cut(s)	240
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	2 cut(s)	476, 757
ApaLI	GTGCAC	1 cut(s)	904
ApeKI	GCWGC	6 cut(s)	20, 415, 418, 614, 617, 620
ApoI	RAATTY	1 cut(s)	145
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	754
AsuII	TTCGAA	1 cut(s)	962
BaeGI	GKGCMC	1 cut(s)	908
BalI	TGGCCA	1 cut(s)	759
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	3 cut(s)	9, 411, 908
BbvI	GCAGC	6 cut(s)	7, 427, 430, 601, 604, 607
BccI	CCATC	1 cut(s)	677
BciT130I	CCWGG	1 cut(s)	566
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	2 cut(s)	38, 506
BfmI	CTRYAG	2 cut(s)	69, 621
BfrI	CTTAAG	1 cut(s)	377
BisI	GCNGC	6 cut(s)	21, 416, 419, 615, 618, 621
BlsI	GCNGC	6 cut(s)	22, 417, 420, 616, 619, 622
Bme1390I	CCNGG	1 cut(s)	566
BmeRI	GACNNNNNGTC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	562
BmrFI	CCNGG	1 cut(s)	566
BmsI	GCATC	4 cut(s)	214, 361, 667, 916
BpmI	CTGGAG	1 cut(s)	109
Bpu14I	TTCGAA	1 cut(s)	962
BpuEI	CTTGAG	1 cut(s)	648
BsaAI	YACGTR	1 cut(s)	818
BsaJI	CCNNGG	2 cut(s)	564, 565
Bse1I	ACTGG	3 cut(s)	160, 190, 489
BseBI	CCWGG	1 cut(s)	566
BseDI	CCNNGG	2 cut(s)	564, 565
BseGI	GGATG	1 cut(s)	658
BseMII	CTCAG	3 cut(s)	326, 436, 942
BseNI	ACTGG	3 cut(s)	160, 190, 489
BseRI	GAGGAG	1 cut(s)	419
BseSI	GKGCMC	1 cut(s)	908
BseXI	GCAGC	6 cut(s)	7, 427, 430, 601, 604, 607
BshFI	GGCC	2 cut(s)	478, 759
BsiHKAI	GWGCWC	3 cut(s)	9, 411, 908
BslFI	GGGAC	2 cut(s)	326, 849
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	2 cut(s)	326, 849
BsnI	GGCC	2 cut(s)	478, 759
Bsp119I	TTCGAA	1 cut(s)	962
Bsp1286I	GDGCHC	3 cut(s)	9, 411, 908
Bsp143I	GATC	2 cut(s)	232, 913
BspACI	CCGC	1 cut(s)	331
BspANI	GGCC	2 cut(s)	478, 759
BspCNI	CTCAG	3 cut(s)	325, 435, 943
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	1 cut(s)	562
BspMAI	CTGCAG	1 cut(s)	625
BspPI	GGATC	1 cut(s)	240
BspT104I	TTCGAA	1 cut(s)	962
BspTI	CTTAAG	1 cut(s)	377
BsrI	ACTGG	3 cut(s)	160, 190, 489
BssECI	CCNNGG	2 cut(s)	564, 565
BssMI	GATC	2 cut(s)	232, 913
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	4 cut(s)	49, 583, 738, 808
BstAFI	CTTAAG	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	818
BstBI	TTCGAA	1 cut(s)	962
BstDEI	CTNAG	3 cut(s)	312, 422, 951
BstEII	GGTNACC	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	658
BstKTI	GATC	2 cut(s)	235, 916
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	2 cut(s)	232, 913
BstMWI	GCNNNNNNNGC	4 cut(s)	284, 415, 620, 626
BstNI	CCWGG	1 cut(s)	566
BstNSI	RCATGY	1 cut(s)	100
BstPI	GGTNACC	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	564
BstSFI	CTRYAG	2 cut(s)	69, 621
BstSLI	GKGCMC	1 cut(s)	908
BstV1I	GCAGC	6 cut(s)	7, 427, 430, 601, 604, 607
BsuRI	GGCC	2 cut(s)	478, 759
BtsCI	GGATG	1 cut(s)	658
BtsIMutI	CAGTG	3 cut(s)	45, 358, 695
CaiI	CAGNNNCTG	1 cut(s)	77
CciI	TCATGA	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	476
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	3 cut(s)	94, 482, 734
CviAII	CATG	6 cut(s)	97, 595, 602, 832, 839, 923
CviQI	GTAC	3 cut(s)	94, 482, 734
DdeI	CTNAG	3 cut(s)	312, 422, 951
DpnI	GATC	2 cut(s)	234, 915
DpnII	GATC	2 cut(s)	232, 913
DriI	GACNNNNNGTC	1 cut(s)	436
EaeI	YGGCCR	1 cut(s)	757
Eam1105I	GACNNNNNGTC	1 cut(s)	436
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco32I	GATATC	1 cut(s)	749
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	476
EcoO65I	GGTNACC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	564
EcoRV	GATATC	1 cut(s)	749
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	6 cut(s)	100, 598, 605, 835, 842, 926
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	2 cut(s)	326, 849
FatI	CATG	6 cut(s)	96, 594, 601, 831, 838, 922
Fnu4HI	GCNGC	6 cut(s)	21, 416, 419, 615, 618, 621
FokI	GGATG	1 cut(s)	645
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	6 cut(s)	21, 416, 419, 615, 618, 621
FspBI	CTAG	2 cut(s)	38, 506
GluI	GCNGC	6 cut(s)	21, 416, 419, 615, 618, 621
GsuI	CTGGAG	1 cut(s)	109
HaeIII	GGCC	2 cut(s)	478, 759
HgaI	GACGC	1 cut(s)	587
Hin1II	CATG	6 cut(s)	100, 598, 605, 835, 842, 926
HindIII	AAGCTT	1 cut(s)	276
HinfI	GANTC	4 cut(s)	74, 460, 710, 947
HphI	GGTGA	1 cut(s)	754
Hpy166II	GTNNAC	1 cut(s)	906
Hpy188I	TCNGA	5 cut(s)	120, 268, 315, 425, 952
Hpy188III	TCNNGA	4 cut(s)	126, 368, 602, 665
Hpy8I	GTNNAC	1 cut(s)	906
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	4 cut(s)	49, 583, 738, 808
HpyCH4IV	ACGT	2 cut(s)	307, 817
HpyCH4V	TGCA	9 cut(s)	227, 415, 623, 693, 766, 821, 906, 929, 935
HpyF10VI	GCNNNNNNNGC	4 cut(s)	284, 415, 620, 626
HpyF3I	CTNAG	3 cut(s)	312, 422, 951
HpySE526I	ACGT	2 cut(s)	307, 817
Hsp92II	CATG	6 cut(s)	100, 598, 605, 835, 842, 926
Kzo9I	GATC	2 cut(s)	232, 913
LmnI	GCTCC	2 cut(s)	4, 406
Lsp1109I	GCAGC	6 cut(s)	7, 427, 430, 601, 604, 607
LweI	GCATC	4 cut(s)	214, 361, 667, 916
MaeI	CTAG	2 cut(s)	38, 506
MaeII	ACGT	2 cut(s)	307, 817
MaeIII	GTNAC	6 cut(s)	57, 358, 397, 547, 698, 796
MalI	GATC	2 cut(s)	234, 915
MboI	GATC	2 cut(s)	232, 913
MboII	GAAGA	1 cut(s)	201
MfeI	CAATTG	2 cut(s)	822, 909
MhlI	GDGCHC	3 cut(s)	9, 411, 908
MlsI	TGGCCA	1 cut(s)	759
MluCI	AATT	6 cut(s)	26, 145, 363, 822, 857, 909
MluNI	TGGCCA	1 cut(s)	759
MnlI	CCTC	5 cut(s)	223, 397, 513, 551, 672
Mox20I	TGGCCA	1 cut(s)	759
MscI	TGGCCA	1 cut(s)	759
MseI	TTAA	3 cut(s)	378, 456, 516
Msp20I	TGGCCA	1 cut(s)	759
MspCI	CTTAAG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	566
MunI	CAATTG	2 cut(s)	822, 909
MvaI	CCWGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	4 cut(s)	284, 415, 620, 626
NdeII	GATC	2 cut(s)	232, 913
NlaIII	CATG	6 cut(s)	100, 598, 605, 835, 842, 926
NlaIV	GGNNCC	1 cut(s)	562
NmuCI	GTSAC	1 cut(s)	358
NspI	RCATGY	1 cut(s)	100
NspV	TTCGAA	1 cut(s)	962
PagI	TCATGA	1 cut(s)	601
PasI	CCCWGGG	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	1 cut(s)	734
PfeI	GAWTC	4 cut(s)	74, 460, 710, 947
PkrI	GCNGC	6 cut(s)	22, 417, 420, 616, 619, 622
Ppu21I	YACGTR	1 cut(s)	818
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	564
PspEI	GGTNACC	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	1 cut(s)	562
PspPI	GGNCC	1 cut(s)	476
PstI	CTGCAG	1 cut(s)	625
PstNI	CAGNNNCTG	1 cut(s)	77
RsaI	GTAC	3 cut(s)	95, 483, 735
RsaNI	GTAC	3 cut(s)	94, 482, 734
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	3 cut(s)	378, 456, 516
SatI	GCNGC	6 cut(s)	21, 416, 419, 615, 618, 621
Sau3AI	GATC	2 cut(s)	232, 913
Sau96I	GGNCC	1 cut(s)	476
ScrFI	CCNGG	1 cut(s)	566
SduI	GDGCHC	3 cut(s)	9, 411, 908
SfaNI	GCATC	4 cut(s)	214, 361, 667, 916
SfcI	CTRYAG	2 cut(s)	69, 621
SfuI	TTCGAA	1 cut(s)	962
SmlI	CTYRAG	2 cut(s)	377, 663
SmoI	CTYRAG	2 cut(s)	377, 663
Sse9I	AATT	6 cut(s)	26, 145, 363, 822, 857, 909
SsiI	CCGC	1 cut(s)	331
SspMI	CTAG	2 cut(s)	38, 506
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	564
TaaI	ACNGT	4 cut(s)	49, 583, 738, 808
TaiI	ACGT	2 cut(s)	310, 820
TaqI	TCGA	2 cut(s)	751, 962
TasI	AATT	6 cut(s)	26, 145, 363, 822, 857, 909
TatI	WGTACW	1 cut(s)	481
TfiI	GAWTC	4 cut(s)	74, 460, 710, 947
Tru1I	TTAA	3 cut(s)	378, 456, 516
Tru9I	TTAA	3 cut(s)	378, 456, 516
TscAI	CASTG	3 cut(s)	52, 358, 695
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	6 cut(s)	20, 415, 418, 614, 617, 620
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	855
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	3 cut(s)	52, 358, 695
Vha464I	CTTAAG	1 cut(s)	377
VneI	GTGCAC	1 cut(s)	904
XapI	RAATTY	1 cut(s)	145
XceI	RCATGY	1 cut(s)	100
XcmI	CCANNNNNNNNNTGG	3 cut(s)	133, 441, 572
XspI	CTAG	2 cut(s)	38, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.